Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Reverse (-)

70276077 .. 70276358

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34037

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACGGGCATTGAGTACGTGCTGACTAAAGTTAAGGAGCCAAACCTTTTCGTCATAACCAAGCAGAAGAAGGATGCTCCTGAGACAATTACTCCTGTGGCGACTTACTACGTCTTGTATGGCTCGATCTACCAAGCACCGTCGCTTCGCAATGTGTTGGAAGCTAAAATGGGACGTGTAATGCACCATATATCTAATGCTTTCAAGACTACTGCGTCAAATTTGGAGAAGATTGGATACGTTGGCTCTGAAAGTGGACCTACGGCCAACTTTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

93

Amino Acids

10.31

Weight (kDa)

8.89

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	1 - 73	1.3e-22	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	220, 276
AfaI	GTAC	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	205, 275
AjiI	CACGTC	1 cut(s)	176
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	264
ApoI	RAATTY	2 cut(s)	220, 276
AspS9I	GGNCC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BceAI	ACGGC	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bse3DI	GCAATG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	157
BssMI	GATC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	266
BtrI	CACGTC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	5 cut(s)	40, 123, 164, 246, 266
CviKI_1	RGCY	5 cut(s)	40, 123, 164, 246, 266
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	257
FaiI	YATR	4 cut(s)	56, 120, 189, 191
FaqI	GGGAC	1 cut(s)	186
FokI	GGATG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	266
HgaI	GACGC	1 cut(s)	204
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	80, 205
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	4 cut(s)	18, 111, 175, 240
HpyCH4V	TGCA	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	4 cut(s)	18, 111, 175, 240
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	37, 82
LpnPI	CCDG	2 cut(s)	93, 108
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	4 cut(s)	18, 111, 175, 240
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	79, 241
MluCI	AATT	3 cut(s)	87, 220, 276
MmeI	TCCRAC	1 cut(s)	138
MseI	TTAA	1 cut(s)	33
NdeII	GATC	1 cut(s)	126
NlaIV	GGNNCC	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	257
SetI	ASST	7 cut(s)	21, 48, 114, 166, 178, 243, 262
SfaNI	GCATC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	87, 220, 276
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	4 cut(s)	21, 114, 178, 243
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	87, 220, 276
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	220, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.