Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Reverse (-)

9097269 .. 9100177

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1079700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTTCAAGGACCAGCTATGGTTGAACTCGTATCCTCCTGGTCTTCGATTACTTCGCTATCTCTACGTTCTACGACTGGACTTGTAACAATGAACAGCTTCGTCAACGCTCTATTCACCCCCTCGTCCGAGATCAACTCGTGTAAGAAAATGTCGGGCACTGAATACTGGCTGAGTGAAGTTATGGAGCCACACCTTTTTGTTTTCCGCAAGCAACAGAGGGATGGTCCGGAGAAAGTTACACCGATGCTGACTTATTATGTCTTGGATGGTACAATTTACCAAGCACCACAACTTTGCAATGTTTTTGCCGCTCTAATTGCACGTGCTCTCCATTATATATCTAAGGCTTTTACGACTGCTGCCTCAAAGCTGGAGAAGATTGGATACGAAAATGAGGCTGCAGCCTTCGAATCAAAGGTTACCAAAGAGACAATTGACTTCAAGGAAGTAAAGCGAGTGGACCTTATTCTTCAATCCTTACAGTGCAAGCTACCACCCGCCCCACCACCGCCACCATTTCCAGAAGGCTATGTTCCCGCCCCAACTGCAGAAGCAGAGAACAGCACTGAAACCCAACAAGCTGGAGAGACACAAAACCCTCAAATAGATCCCATCATTGATCAAGGCCCAGGTAAAAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

216

Amino Acids

23.74

Weight (kDa)

5.31

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	42 - 123	3.3e-20	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	5 cut(s)	208, 312, 501, 512, 540
AclWI	GGATC	1 cut(s)	605
AcvI	CACGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	8, 26, 445, 476
AjnI	CCWGG	2 cut(s)	38, 631
AluBI	AGCT	5 cut(s)	17, 99, 373, 493, 584
AluI	AGCT	5 cut(s)	17, 99, 373, 493, 584
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	2 cut(s)	425, 584
AlwI	GGATC	1 cut(s)	605
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	628
ApeKI	GCWGC	3 cut(s)	362, 401, 404
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	4 cut(s)	11, 227, 463, 629
AsuHPI	GGTGA	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	411
AvaII	GGWCC	3 cut(s)	11, 227, 463
BaeGI	GKGCMC	1 cut(s)	161
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BauI	CACGAG	1 cut(s)	139
BbrPI	CACGTG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	349, 388, 416
BccI	CCATC	3 cut(s)	218, 263, 623
BciT130I	CCWGG	2 cut(s)	40, 633
BciVI	GTATCC	2 cut(s)	43, 380
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	425, 584
BfmI	CTRYAG	2 cut(s)	402, 549
BfuI	GTATCC	2 cut(s)	43, 380
BisI	GCNGC	4 cut(s)	312, 363, 402, 405
BlsI	GCNGC	4 cut(s)	313, 364, 403, 406
Bme1390I	CCNGG	2 cut(s)	40, 633
Bme18I	GGWCC	3 cut(s)	11, 227, 463
BmgT120I	GGNCC	4 cut(s)	11, 227, 463, 629
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	40, 633
BmsI	GCATC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	2 cut(s)	395, 606
Bpu14I	TTCGAA	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	631
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse1I	ACTGG	2 cut(s)	82, 173
Bse3DI	GCAATG	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	40, 633
BseDI	CCNNGG	1 cut(s)	631
BseGI	GGATG	2 cut(s)	229, 274
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	82, 173
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	349, 388, 416
BshFI	GGCC	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	425, 584
BsnI	GGCC	1 cut(s)	630
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	161, 331
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	132, 610, 622
BspACI	CCGC	5 cut(s)	208, 312, 501, 512, 540
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	2 cut(s)	406, 553
BspPI	GGATC	1 cut(s)	605
BspT104I	TTCGAA	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	82, 173
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	3 cut(s)	132, 610, 622
BssSI	CACGAG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	40, 633
Bst4CI	ACNGT	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	212, 491
BstDEI	CTNAG	2 cut(s)	173, 345
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	2 cut(s)	229, 274
BstKTI	GATC	3 cut(s)	135, 613, 625
BstMAI	GTCTC	2 cut(s)	425, 584
BstMBI	GATC	3 cut(s)	132, 610, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 548
BstNI	CCWGG	2 cut(s)	40, 633
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	38, 631
BstSFI	CTRYAG	2 cut(s)	402, 549
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	349, 388, 416
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	610
BstXI	CCANNNNNNTGG	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	610
BsuI	GTATCC	2 cut(s)	43, 380
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	229, 274
BtsIMutI	CAGTG	3 cut(s)	159, 491, 567
Cac8I	GCNNGC	2 cut(s)	212, 491
Cfr13I	GGNCC	4 cut(s)	11, 227, 463, 629
Csp6I	GTAC	1 cut(s)	273
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	173, 345
DpnI	GATC	3 cut(s)	134, 612, 624
DpnII	GATC	3 cut(s)	132, 610, 622
Eco47I	GGWCC	3 cut(s)	11, 227, 463
Eco72I	CACGTG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	38, 631
FaiI	YATR	6 cut(s)	20, 185, 261, 339, 341, 534
FauI	CCCGC	2 cut(s)	508, 547
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	4 cut(s)	312, 363, 402, 405
FokI	GGATG	2 cut(s)	236, 281
Fsp4HI	GCNGC	4 cut(s)	312, 363, 402, 405
GluI	GCNGC	4 cut(s)	312, 363, 402, 405
GsuI	CTGGAG	2 cut(s)	395, 606
HaeIII	GGCC	1 cut(s)	630
HapII	CCGG	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	106, 463
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	230, 524
Hpy8I	GTNNAC	2 cut(s)	106, 463
HpyAV	CCTTC	2 cut(s)	418, 521
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	2 cut(s)	67, 325
HpyCH4V	TGCA	5 cut(s)	300, 323, 404, 489, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 548
HpyF3I	CTNAG	2 cut(s)	173, 345
HpySE526I	ACGT	2 cut(s)	67, 325
Kpn2I	TCCGGA	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	132, 610, 622
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	3 cut(s)	349, 388, 416
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	2 cut(s)	67, 325
MaeIII	GTNAC	3 cut(s)	85, 238, 421
MalI	GATC	3 cut(s)	134, 612, 624
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	3 cut(s)	132, 610, 622
MboII	GAAGA	3 cut(s)	36, 391, 464
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	2 cut(s)	161, 331
MluCI	AATT	3 cut(s)	276, 318, 435
MnlI	CCTC	6 cut(s)	46, 133, 213, 376, 391, 612
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	98
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	40, 633
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	2 cut(s)	40, 633
MwoI	GCNNNNNNNGC	2 cut(s)	320, 548
NdeII	GATC	3 cut(s)	132, 610, 622
NlaIV	GGNNCC	1 cut(s)	189
NspV	TTCGAA	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	313, 364, 403, 406
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	38, 631
PspCI	CACGTG	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	421
PspGI	CCWGG	2 cut(s)	38, 631
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	4 cut(s)	11, 227, 463, 629
PstI	CTGCAG	2 cut(s)	406, 553
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SatI	GCNGC	4 cut(s)	312, 363, 402, 405
Sau3AI	GATC	3 cut(s)	132, 610, 622
Sau96I	GGNCC	4 cut(s)	11, 227, 463, 629
ScrFI	CCNGG	2 cut(s)	40, 633
SduI	GDGCHC	2 cut(s)	161, 331
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	2 cut(s)	402, 549
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	3 cut(s)	11, 227, 463
Sse9I	AATT	3 cut(s)	276, 318, 435
SsiI	CCGC	5 cut(s)	208, 312, 501, 512, 540
StyD4I	CCNGG	2 cut(s)	38, 631
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	2 cut(s)	70, 328
TaqI	TCGA	2 cut(s)	47, 411
TasI	AATT	3 cut(s)	276, 318, 435
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	413
TscAI	CASTG	3 cut(s)	166, 491, 574
TseI	GCWGC	3 cut(s)	362, 401, 404
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	166, 491, 574
VpaK11BI	GGWCC	3 cut(s)	11, 227, 463
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.