Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Forward (+)

20588783 .. 20601199

Gene Structure 12417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGTTCAATGTAGCTCAGTTATGGCATGATGATCAGTTAGCCGGTATCACAGAGCTAGCTGATCATCAGCCTCCATTGACAAAGCGTGACCGCGGACGACCAAGAAAGGTTGACGGGTGTGGGGGCAGCAGCAGTGGACGGCCTAGGCCACAAGAACGAAGATCACAGGAGCGCGCGGTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

62

Amino Acids

6.97

Weight (kDa)

9.29

Isoelectric Point (pI)

66.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	96, 177, 179
AciI	CCGC	3 cut(s)	94, 96, 179
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	3 cut(s)	17, 58, 62
AluI	AGCT	3 cut(s)	17, 58, 62
AoxI	GGCC	2 cut(s)	143, 149
ApeKI	GCWGC	2 cut(s)	129, 132
AspA2I	CCTAGG	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	177, 179
AsuNHI	GCTAGC	1 cut(s)	58
AvrII	CCTAGG	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	141, 144
BceAI	ACGGC	1 cut(s)	158
BclI	TGATCA	2 cut(s)	34, 64
BfaI	CTAG	2 cut(s)	59, 147
BisI	GCNGC	2 cut(s)	130, 133
BlnI	CCTAGG	1 cut(s)	146
BlsI	GCNGC	2 cut(s)	131, 134
BmtI	GCTAGC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	94, 146
Bse118I	RCCGGY	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	94, 146
BseMII	CTCAG	1 cut(s)	32
BsePI	GCGCGC	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	141, 144
Bsh1236I	CGCG	3 cut(s)	96, 177, 179
BshFI	GGCC	2 cut(s)	145, 151
BsiSI	CCGG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	145, 151
Bsp143I	GATC	3 cut(s)	34, 64, 164
BspACI	CCGC	3 cut(s)	94, 96, 179
BspANI	GGCC	2 cut(s)	145, 151
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	3 cut(s)	96, 177, 179
BspOI	GCTAGC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	94, 146
BssHII	GCGCGC	1 cut(s)	175
BssMI	GATC	3 cut(s)	34, 64, 164
BssT1I	CCWWGG	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	60, 177
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	94
BstFNI	CGCG	3 cut(s)	96, 177, 179
BstHHI	GCGC	2 cut(s)	177, 179
BstKTI	GATC	3 cut(s)	37, 67, 167
BstMBI	GATC	3 cut(s)	34, 64, 164
BstUI	CGCG	3 cut(s)	96, 177, 179
BstV1I	GCAGC	2 cut(s)	141, 144
BsuRI	GGCC	2 cut(s)	145, 151
BtgI	CCRYGG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	60, 177
CfoI	GCGC	2 cut(s)	177, 179
Cfr10I	RCCGGY	1 cut(s)	44
Cfr42I	CCGCGG	1 cut(s)	97
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	7 cut(s)	17, 44, 58, 62, 73, 145, 151
CviKI_1	RGCY	7 cut(s)	17, 44, 58, 62, 73, 145, 151
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	3 cut(s)	36, 66, 166
DpnII	GATC	3 cut(s)	34, 64, 164
Eco130I	CCWWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	32
FaiI	YATR	2 cut(s)	25, 30
FatI	CATG	1 cut(s)	28
FbaI	TGATCA	2 cut(s)	34, 64
Fnu4HI	GCNGC	2 cut(s)	130, 133
Fsp4HI	GCNGC	2 cut(s)	130, 133
FspBI	CTAG	2 cut(s)	59, 147
GlaI	GCGC	2 cut(s)	176, 178
GluI	GCNGC	2 cut(s)	130, 133
HaeIII	GGCC	2 cut(s)	145, 151
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	2 cut(s)	177, 179
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	175, 177
HinP1I	GCGC	2 cut(s)	175, 177
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	115, 140
Hpy8I	GTNNAC	2 cut(s)	115, 140
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	2 cut(s)	175, 177
Ksp22I	TGATCA	2 cut(s)	34, 64
KspI	CCGCGG	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	34, 64, 164
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	2 cut(s)	58, 155
Lsp1109I	GCAGC	2 cut(s)	141, 144
MaeI	CTAG	2 cut(s)	59, 147
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	36, 66, 166
MboI	GATC	3 cut(s)	34, 64, 164
MboII	GAAGA	1 cut(s)	174
MnlI	CCTC	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	45
MvnI	CGCG	3 cut(s)	96, 177, 179
NdeII	GATC	3 cut(s)	34, 64, 164
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	89
PauI	GCGCGC	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	131, 134
PteI	GCGCGC	1 cut(s)	175
SacII	CCGCGG	1 cut(s)	97
SatI	GCNGC	2 cut(s)	130, 133
Sau3AI	GATC	3 cut(s)	34, 64, 164
SetI	ASST	4 cut(s)	19, 60, 64, 114
Sfr303I	CCGCGG	1 cut(s)	97
SgrBI	CCGCGG	1 cut(s)	97
SsiI	CCGC	3 cut(s)	94, 96, 179
SspMI	CTAG	2 cut(s)	59, 147
StyI	CCWWGG	1 cut(s)	146
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	129, 132
Tsp45I	GTSAC	1 cut(s)	89
TspRI	CASTG	1 cut(s)	142
XmaJI	CCTAGG	1 cut(s)	146
XspI	CTAG	2 cut(s)	59, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.