Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Forward (+)

64007650 .. 64010559

Gene Structure 2910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCCACGCCGCCGCCGAACATGGAGGGTGGCCCGCCGCAAGTTGTAGCACAGCCGCCGGGGACGGACATGACCGGAATATGCTTCAAGGACCAGCTTTGGCTGAGCTCTTATCCTCTCGATCGCAATCTGGTCTTTGATTACTTTGCAATCTCGCCCTTCTACGACTGGACCTGTAATAATGAACAGCTCCGTCAGCGCGCAATTCACCCTCTTGATATCTCTCACCTCTCCAAAATGACGGGGACAGAATACATGCTGACGGAAGTTACAGAGCCGCACCTGTTTGTTATCCGCAAGCAAAAGAGGGACAGTCCAGAGAAAGTAACACCCATGATGACTTACTATGTGTTGGATGGTTCGATATATCAAGCACCTCAGCTTTGCAATGTTTTTGCAGCTCGAGTTGGACGCGCTCTCTATCATATAAATAAGGCTTTCACCACTGCTTCTTCAAACTTGGAGAAGATTGGATATGTTGATCCAGAAAATGAGACTGCAGCCTCTGAATCCAAGGCTAGCAAAGAGACAATTGACGTAAGGGAATTTAATCGAGTGAACCAAATTCTTCAATCGTTATTGCGCAAGGTAATTATCAAAGAACTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

203

Amino Acids

23.12

Weight (kDa)

6.43

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	27 - 152	1.3e-43	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	584
AccII	CGCG	2 cut(s)	201, 414
AciI	CCGC	7 cut(s)	11, 14, 35, 38, 56, 278, 295
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	545, 564
AgsI	TTSAA	3 cut(s)	88, 456, 572
AluBI	AGCT	5 cut(s)	97, 108, 190, 382, 401
AluI	AGCT	5 cut(s)	97, 108, 190, 382, 401
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	488, 521
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	2 cut(s)	3, 31
ApeKI	GCWGC	2 cut(s)	398, 500
ApoI	RAATTY	2 cut(s)	545, 564
AspLEI	GCGC	4 cut(s)	201, 203, 416, 585
AspS9I	GGNCC	3 cut(s)	32, 91, 171
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	200, 218, 433
AsuNHI	GCTAGC	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	2 cut(s)	91, 171
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	410, 512
BccI	CCATC	1 cut(s)	350
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	488, 521
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	7 cut(s)	11, 14, 38, 56, 278, 399, 501
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	7 cut(s)	12, 15, 39, 57, 279, 400, 502
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	91, 171
BmeT110I	CYCGRG	1 cut(s)	402
BmgT120I	GGNCC	3 cut(s)	32, 91, 171
BmrFI	CCNGG	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	59, 513
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	394
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	59, 513
BseGI	GGATG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	95, 392
BseNI	ACTGG	1 cut(s)	173
BsePI	GCGCGC	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	410, 512
Bsh1236I	CGCG	2 cut(s)	201, 414
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	5, 33
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	2 cut(s)	59, 75
BslFI	GGGAC	3 cut(s)	76, 259, 323
BsmAI	GTCTC	2 cut(s)	488, 521
BsmFI	GGGAC	3 cut(s)	76, 259, 323
BsnI	GGCC	2 cut(s)	5, 33
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	121, 481
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	7 cut(s)	11, 14, 35, 38, 56, 278, 295
BspANI	GGCC	2 cut(s)	5, 33
BspCNI	CTCAG	2 cut(s)	96, 391
BspFNI	CGCG	2 cut(s)	201, 414
BspMAI	CTGCAG	1 cut(s)	502
BspOI	GCTAGC	1 cut(s)	522
BspPI	GGATC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	59, 513
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	2 cut(s)	121, 481
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	35, 201, 299, 520
BstDEI	CTNAG	2 cut(s)	104, 378
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	2 cut(s)	201, 414
BstHHI	GCGC	4 cut(s)	201, 203, 416, 585
BstKTI	GATC	2 cut(s)	124, 484
BstMAI	GTCTC	2 cut(s)	488, 521
BstMBI	GATC	2 cut(s)	121, 481
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	2 cut(s)	201, 414
BstV1I	GCAGC	2 cut(s)	410, 512
BsuRI	GGCC	2 cut(s)	5, 33
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	35, 201, 299, 520
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	4 cut(s)	201, 203, 416, 585
Cfr13I	GGNCC	3 cut(s)	32, 91, 171
CseI	GACGC	1 cut(s)	420
CviAII	CATG	4 cut(s)	22, 70, 256, 334
DdeI	CTNAG	2 cut(s)	104, 378
DpnI	GATC	2 cut(s)	123, 483
DpnII	GATC	2 cut(s)	121, 481
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	91, 171
Eco53kI	GAGCTC	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	25, 73, 259, 337
FaqI	GGGAC	3 cut(s)	76, 259, 323
FatI	CATG	4 cut(s)	21, 69, 255, 333
FauI	CCCGC	1 cut(s)	42
Fnu4HI	GCNGC	7 cut(s)	11, 14, 38, 56, 278, 399, 501
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	7 cut(s)	11, 14, 38, 56, 278, 399, 501
FspBI	CTAG	1 cut(s)	519
FspI	TGCGCA	1 cut(s)	584
GlaI	GCGC	4 cut(s)	200, 202, 415, 584
GluI	GCNGC	7 cut(s)	11, 14, 38, 56, 278, 399, 501
HaeIII	GGCC	2 cut(s)	5, 33
HapII	CCGG	2 cut(s)	59, 75
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	4 cut(s)	201, 203, 416, 585
Hin1II	CATG	4 cut(s)	25, 73, 259, 337
Hin6I	GCGC	4 cut(s)	199, 201, 414, 583
HinP1I	GCGC	4 cut(s)	199, 201, 414, 583
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	2 cut(s)	59, 75
HphI	GGTGA	3 cut(s)	200, 218, 433
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	1 cut(s)	508
Hpy188III	TCNNGA	4 cut(s)	119, 215, 317, 485
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	4 cut(s)	149, 387, 398, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	104, 378
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	25, 73, 259, 337
HspAI	GCGC	4 cut(s)	199, 201, 414, 583
Kzo9I	GATC	2 cut(s)	121, 481
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	9 cut(s)	72, 88, 107, 116, 154, 187, 296, 330, 498
Lsp1109I	GCAGC	2 cut(s)	410, 512
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	2 cut(s)	268, 325
MalI	GATC	2 cut(s)	123, 483
MboI	GATC	2 cut(s)	121, 481
MboII	GAAGA	3 cut(s)	444, 478, 560
MfeI	CAATTG	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	110
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	204, 531, 545, 564, 591
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	333, 388
MnlI	CCTC	7 cut(s)	19, 126, 222, 239, 300, 387, 514
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	59, 75
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	531
MvnI	CGCG	2 cut(s)	201, 414
MwoI	GCNNNNNNNGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	121, 481
NheI	GCTAGC	1 cut(s)	518
NlaIII	CATG	4 cut(s)	25, 73, 259, 337
NsbI	TGCGCA	1 cut(s)	584
NspI	RCATGY	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	402
PauI	GCGCGC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	7 cut(s)	12, 15, 39, 57, 279, 400, 502
Ple19I	CGATCG	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	32, 91, 171
PspXI	VCTCGAGB	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	506
PteI	GCGCGC	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	7 cut(s)	11, 14, 38, 56, 278, 399, 501
Sau3AI	GATC	2 cut(s)	121, 481
Sau96I	GGNCC	3 cut(s)	32, 91, 171
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	402
SinI	GGWCC	2 cut(s)	91, 171
SlaI	CTCGAG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	5 cut(s)	204, 531, 545, 564, 591
SsiI	CCGC	7 cut(s)	11, 14, 35, 38, 56, 278, 295
SspMI	CTAG	1 cut(s)	519
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	4 cut(s)	120, 362, 403, 553
TasI	AATT	5 cut(s)	204, 531, 545, 564, 591
TauI	GCSGC	5 cut(s)	13, 16, 40, 58, 280
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	2 cut(s)	398, 500
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	3 cut(s)	80, 182, 278
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	91, 171
XapI	RAATTY	2 cut(s)	545, 564
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	402
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.