Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006695

Physical Location & Seq

Genomic Coordinates Reverse (-)

7606460 .. 7608477

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGATGTTTCGGACCATCAAAGGCTTCAAGAACAAGAAACAATGAACATGACAAGATAACACGACAAAACCCCTCTCATCAACCTCAAACCATGAGAGCTGAAGAAGTTCTGTTGCAGATTCCTAGATGTAGAGTCCATCTCATAGGCGAATCCGAGGCGGTGGAGCTTGCCTCTGGTGATTTCAAGCTCGTTAAGGTCTCAGACAACGGTGTAACTCTAGCTATGATCGTGAGAATCGGACATGACCTTCAGTGGCCAGTGATTAGAGATGAGCCAGTGGTAAAACTTGACGCCCGTGATTACCTCTTCACTCTCCCGGTTAAAGACGGTGATCCACTTAGCTACGGGGTCACTTTCTCTGGCGATGACAGAGACGTAGCCCTCGTGAACAGTCTGAAGTTGCTTGACCAATTCTTGAGTGAGAATTCTTGTTTCTCGTCTACGGCTTCGAGTAAGGTTAACAATGGAATCGACTGGCAAGAGTTTGCGCCGAGGATTGAAGATTACAACAACGTTGTTGCTAAGGCTATTGCTGGAGGAACAGGACATATCATTAGAGGAATCTTTAGTCTCAGTAATGCTTACTCTAACCAGGTTCACAAGGGAGGCGACATAATGATTACAAAGGCTGAGGAGAGCCAGAGAAATGGAAGTTACAACAATGGAAACTCCAGTGGTAATGAGAAGAAAAATGGGATCAACACACACCTTCAACGAGTGAGGAAGCTGTCAAAGGCGACTGAGAATCTGAGCAAGACGATGTTGAATGGTGCGGGAGTTGTGAGCGGCTCTGTGATGGTCCCTATGATGAAGTCGAAACCAGGGATGGCCTTCTTTTCGATGGTTCCAGGGGAGGTCCTCTTAGCTTCACTTGATGCCCTTAATAAAATACTAGATGCAACTGAAGCTGCAGAGAGACAAACTCTATCTGCAACATCCAGGGCTGCTACCAGAATGGTCAGTGAGAGGTTTGGAGATAACGCAGGGGAGGCCACCGGAGATGTTCTAGCAACAGCGGGCCACGCAGCTGGAACTGCCTGGAATGTTCTCAAGATCCGTAAGACTTTCTATCCTTCATCTTCTCTTACATCAGGAATCGTCAAAAATGCTCCAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Senescence

Protein Analysis

374

Amino Acids

40.45

Weight (kDa)

8.98

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21600 AT3G21600 AT3G21600 AT4G15450 AT4G15450
fragaria_vesca	FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090
malus_domestica	MD02G1065400.v1.1 MD15G1196300.v1.1
prunus_persica	Prupe.7G220100_v2.0.a1
pyrus_communis	pycom02g05150
rosa_chinensis	RchiOBHm_Chr2g0091841
rosa_laevigata	RLG00000016256
rosa_multiflora	Rmu_sc0021719.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149690
rosa_samantha	Rh2AG066200 Rh2BG065600 Rh2CG067000 Rh2DG065300
rosa_wichuraiana	Rw2G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	443
AciI	CCGC	4 cut(s)	161, 776, 789, 1019
AclI	AACGTT	1 cut(s)	516
AclWI	GGATC	3 cut(s)	329, 707, 1051
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	4 cut(s)	123, 236, 419, 927
AcyI	GRCGYC	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	30, 187, 503, 716, 769
AjnI	CCWGG	5 cut(s)	594, 823, 850, 941, 1040
AluBI	AGCT	9 cut(s)	101, 169, 190, 224, 345, 730, 869, 911, 1031
AluI	AGCT	9 cut(s)	101, 169, 190, 224, 345, 730, 869, 911, 1031
Alw26I	GTCTC	4 cut(s)	205, 369, 578, 913
AlwI	GGATC	3 cut(s)	329, 707, 1051
AoxI	GGCC	4 cut(s)	257, 831, 993, 1021
ApeKI	GCWGC	3 cut(s)	911, 947, 1028
ApoI	RAATTY	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	4 cut(s)	14, 802, 859, 1021
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	191, 344
AvaII	GGWCC	3 cut(s)	14, 802, 859
BalI	TGGCCA	1 cut(s)	259
BauI	CACGAG	1 cut(s)	386
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	898, 934, 1040
BccI	CCATC	5 cut(s)	25, 147, 793, 823, 838
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	5 cut(s)	596, 825, 852, 943, 1042
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	4 cut(s)	205, 369, 578, 913
BfaI	CTAG	4 cut(s)	126, 221, 896, 1010
BfmI	CTRYAG	1 cut(s)	912
BisI	GCNGC	4 cut(s)	790, 912, 948, 1029
BlsI	GCNGC	4 cut(s)	791, 913, 949, 1030
Bme1390I	CCNGG	6 cut(s)	320, 596, 825, 852, 943, 1042
Bme18I	GGWCC	3 cut(s)	14, 802, 859
BmgT120I	GGNCC	4 cut(s)	14, 802, 859, 1021
BmiI	GGNNCC	2 cut(s)	804, 849
BmrFI	CCNGG	6 cut(s)	320, 596, 825, 852, 943, 1042
BmsI	GCATC	2 cut(s)	868, 889
BplI	GAGNNNNNCTC	6 cut(s)	126, 158, 158, 190, 910, 942
BpmI	CTGGAG	2 cut(s)	558, 658
Bpu10I	CCTNAGC	2 cut(s)	525, 633
BpuEI	CTTGAG	2 cut(s)	439, 1037
BpuMI	CCSGG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	5 cut(s)	156, 494, 824, 851, 942
BsaWI	WCCGGW	1 cut(s)	998
Bse1I	ACTGG	4 cut(s)	260, 278, 482, 675
BseBI	CCWGG	5 cut(s)	596, 825, 852, 943, 1042
BseDI	CCNNGG	5 cut(s)	156, 494, 824, 851, 942
BseGI	GGATG	3 cut(s)	11, 834, 938
BseMII	CTCAG	5 cut(s)	216, 589, 624, 735, 743
BseNI	ACTGG	4 cut(s)	260, 278, 482, 675
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	3 cut(s)	898, 934, 1040
BshFI	GGCC	4 cut(s)	259, 833, 995, 1023
BsiSI	CCGG	2 cut(s)	320, 999
BslFI	GGGAC	1 cut(s)	788
BsmAI	GTCTC	4 cut(s)	205, 369, 578, 913
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	4 cut(s)	259, 833, 995, 1023
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	228, 334, 699, 1056
BspACI	CCGC	4 cut(s)	161, 776, 789, 1019
BspANI	GGCC	4 cut(s)	259, 833, 995, 1023
BspCNI	CTCAG	5 cut(s)	215, 588, 625, 736, 744
BspLI	GGNNCC	2 cut(s)	804, 849
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	3 cut(s)	329, 707, 1051
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	789
BsrI	ACTGG	4 cut(s)	260, 278, 482, 675
BssECI	CCNNGG	5 cut(s)	156, 494, 824, 851, 942
BssMI	GATC	4 cut(s)	228, 334, 699, 1056
BssNI	GRCGYC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	5 cut(s)	596, 825, 852, 943, 1042
Bst4CI	ACNGT	3 cut(s)	212, 332, 395
Bst6I	CTCTTC	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	171, 1021
BstDEI	CTNAG	8 cut(s)	202, 341, 525, 575, 633, 744, 752, 865
BstF5I	GGATG	3 cut(s)	11, 834, 938
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	4 cut(s)	231, 337, 702, 1059
BstMAI	GTCTC	4 cut(s)	205, 369, 578, 913
BstMBI	GATC	4 cut(s)	228, 334, 699, 1056
BstMWI	GCNNNNNNNGC	4 cut(s)	908, 992, 1025, 1037
BstNI	CCWGG	5 cut(s)	596, 825, 852, 943, 1042
BstSCI	CCNGG	6 cut(s)	318, 594, 823, 850, 941, 1040
BstSFI	CTRYAG	1 cut(s)	912
BstV1I	GCAGC	3 cut(s)	898, 934, 1040
BstX2I	RGATCY	1 cut(s)	1056
BstXI	CCANNNNNNTGG	2 cut(s)	650, 1031
BstYI	RGATCY	1 cut(s)	1056
BsuRI	GGCC	4 cut(s)	259, 833, 995, 1023
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	11, 834, 938
BtsIMutI	CAGTG	5 cut(s)	260, 267, 285, 682, 970
Cac8I	GCNNGC	2 cut(s)	171, 1021
CfoI	GCGC	1 cut(s)	493
Cfr13I	GGNCC	4 cut(s)	14, 802, 859, 1021
CseI	GACGC	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	594
CviAII	CATG	3 cut(s)	50, 94, 245
DdeI	CTNAG	8 cut(s)	202, 341, 525, 575, 633, 744, 752, 865
DpnI	GATC	4 cut(s)	230, 336, 701, 1058
DpnII	GATC	4 cut(s)	228, 334, 699, 1056
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	14, 802, 859
Eco57I	CTGAAG	4 cut(s)	123, 236, 419, 927
EcoO109I	RGGNCCY	1 cut(s)	859
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	5 cut(s)	594, 823, 850, 941, 1040
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	3 cut(s)	53, 97, 248
FaiI	YATR	8 cut(s)	51, 95, 146, 227, 246, 552, 617, 809
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	3 cut(s)	49, 93, 244
FauI	CCCGC	2 cut(s)	769, 1012
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	4 cut(s)	790, 912, 948, 1029
FokI	GGATG	3 cut(s)	18, 841, 925
Fsp4HI	GCNGC	4 cut(s)	790, 912, 948, 1029
FspBI	CTAG	4 cut(s)	126, 221, 896, 1010
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	4 cut(s)	790, 912, 948, 1029
GsuI	CTGGAG	2 cut(s)	558, 658
HaeIII	GGCC	4 cut(s)	259, 833, 995, 1023
HapII	CCGG	2 cut(s)	320, 999
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	493
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	53, 97, 248
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	8 cut(s)	121, 135, 152, 237, 471, 564, 748, 1098
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	2 cut(s)	320, 999
HphI	GGTGA	2 cut(s)	191, 344
Hpy166II	GTNNAC	4 cut(s)	391, 444, 463, 601
Hpy188I	TCNGA	6 cut(s)	14, 157, 205, 242, 399, 753
Hpy188III	TCNNGA	6 cut(s)	30, 232, 388, 418, 1054, 1095
Hpy8I	GTNNAC	4 cut(s)	391, 444, 463, 601
HpyAV	CCTTC	4 cut(s)	260, 722, 844, 1086
HpyCH4III	ACNGT	3 cut(s)	212, 332, 395
HpyCH4IV	ACGT	2 cut(s)	378, 516
HpyCH4V	TGCA	4 cut(s)	118, 902, 914, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	908, 992, 1025, 1037
HpyF3I	CTNAG	8 cut(s)	202, 341, 525, 575, 633, 744, 752, 865
HpySE526I	ACGT	2 cut(s)	378, 516
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	53, 97, 248
HspAI	GCGC	1 cut(s)	491
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	228, 334, 699, 1056
LmnI	GCTCC	2 cut(s)	166, 1117
Lsp1109I	GCAGC	3 cut(s)	898, 934, 1040
LweI	GCATC	2 cut(s)	868, 889
MabI	ACCWGGT	1 cut(s)	594
MaeI	CTAG	4 cut(s)	126, 221, 896, 1010
MaeII	ACGT	2 cut(s)	378, 516
MaeIII	GTNAC	3 cut(s)	214, 352, 656
MalI	GATC	4 cut(s)	230, 336, 701, 1058
MbiI	CCGCTC	1 cut(s)	789
MboI	GATC	4 cut(s)	228, 334, 699, 1056
MboII	GAAGA	5 cut(s)	116, 301, 515, 700, 1074
MflI	RGATCY	1 cut(s)	1056
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	2 cut(s)	413, 427
MluNI	TGGCCA	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	4 cut(s)	195, 324, 462, 885
Msp20I	TGGCCA	1 cut(s)	259
MspA1I	CMGCKG	2 cut(s)	1019, 1031
MspI	CCGG	2 cut(s)	320, 999
MspR9I	CCNGG	6 cut(s)	320, 596, 825, 852, 943, 1042
MvaI	CCWGG	5 cut(s)	596, 825, 852, 943, 1042
MwoI	GCNNNNNNNGC	4 cut(s)	908, 992, 1025, 1037
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	4 cut(s)	228, 334, 699, 1056
NlaIII	CATG	3 cut(s)	53, 97, 248
NlaIV	GGNNCC	2 cut(s)	804, 849
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	7 cut(s)	121, 152, 237, 471, 564, 748, 1098
PkrI	GCNGC	4 cut(s)	791, 913, 949, 1030
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	859
Psp1406I	AACGTT	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	859
Psp6I	CCWGG	5 cut(s)	594, 823, 850, 941, 1040
PspGI	CCWGG	5 cut(s)	594, 823, 850, 941, 1040
PspN4I	GGNNCC	2 cut(s)	804, 849
PspPI	GGNCC	4 cut(s)	14, 802, 859, 1021
PspPPI	RGGWCCY	1 cut(s)	859
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	1056
PvuII	CAGCTG	1 cut(s)	1031
SaqAI	TTAA	4 cut(s)	195, 324, 462, 885
SatI	GCNGC	4 cut(s)	790, 912, 948, 1029
Sau3AI	GATC	4 cut(s)	228, 334, 699, 1056
Sau96I	GGNCC	4 cut(s)	14, 802, 859, 1021
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	6 cut(s)	320, 596, 825, 852, 943, 1042
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	868, 889
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	3 cut(s)	14, 802, 859
SmlI	CTYRAG	2 cut(s)	418, 1052
SmoI	CTYRAG	2 cut(s)	418, 1052
Sse9I	AATT	2 cut(s)	413, 427
SsiI	CCGC	4 cut(s)	161, 776, 789, 1019
SspMI	CTAG	4 cut(s)	126, 221, 896, 1010
StyD4I	CCNGG	6 cut(s)	318, 594, 823, 850, 941, 1040
TaaI	ACNGT	3 cut(s)	212, 332, 395
TaiI	ACGT	2 cut(s)	381, 519
TaqI	TCGA	4 cut(s)	452, 474, 818, 842
TasI	AATT	2 cut(s)	413, 427
TauI	GCSGC	1 cut(s)	792
TfiI	GAWTC	7 cut(s)	121, 152, 237, 471, 564, 748, 1098
Tru1I	TTAA	4 cut(s)	195, 324, 462, 885
Tru9I	TTAA	4 cut(s)	195, 324, 462, 885
TscAI	CASTG	5 cut(s)	260, 267, 285, 682, 970
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	911, 947, 1028
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	3 cut(s)	60, 827, 1068
TspGWI	ACGGA	1 cut(s)	1049
TspRI	CASTG	5 cut(s)	260, 267, 285, 682, 970
VpaK11BI	GGWCC	3 cut(s)	14, 802, 859
XapI	RAATTY	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	4 cut(s)	126, 221, 896, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.