RchiOBHm_Chr2g0091841

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006695
Physical Location & Seq
Reverse (-)
5523844 .. 5526314
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46701

Sequence Viewer

Length: 1167 bp
ATGGGTTGCTTCAGTTCTTCCAGTTCCAAATCCAAATCCAAATCCAAATTTAAATCCACCACCAACACATCTCAGTATGATCAAACTGCTGCTCAGCCTCTGCAATACCACGAACCTCCCAACAAAAACGTCCAGCAACAAATCCTCCTACAAATCCCAGGATGCAGAGTTCACCTCATGGAAGAAGGAGAAGCCCTAGAGCTCGCCGTCGGCGAGTTCATTCTCGAGAACATCTTCGACGAGAATATATCTCTAGCCACCGTTATCAAAATCGGTGAAGAACTCCAGTGGCCCTTAACGAAAGACGAGCCGGTTGTGAAGATAGATGATTTGCACTACCTCTTCTCCTTGCCGATGAGAGATGGTGATCCGCTGAGCTACGGTGTGACCTTTCCGGAGCAGTATGCAAGTCACTTGGGATTTCTGGACTCCTTTTTGAAGGAGCACTCGTGCTTTACGATCACTTCCAATAGTAGCGCTACGAAGAATGTTAAGGGAGTTGATTGGAAGGAGTATGCTCCGAGGATTGATGACTATAACAATGTGTTGGCCAAGGCAATTGCAGGAGGAACTGGTCAGATTGTCAGAGGAATCTTCATGTGTAGCAATGCTTATGCTAATCAGCTCCATAAAGGAGGGGAAACGACATTGGCTCGTCCAGTTGAGGAGAAAAGATATGGGAAACAAGAAAGTCATAGCAAAAATTCTAATGCCACAAACAAGAGTGGAATGAACAGGAGCTTGAAACGTGTGAGAAGGTTGTCAAAGATGACATCAAATTTGAGCAAATCTATGCTTGATGGGGTTGGTCTTGTGACCGGATCAGTGATGAAACCTGTGGTTAAATCCCAAGCAGGGAAGGCATTCCTAAACATGGTTCCAGGACAAGTCCTCTTGGCTTCACTTGATGCTATCAACAAGATTTTAGATGCTGCTGAAGTTGCCGAAAAACAAGCCCTTTCGGCTACCTCTGCTGCAACAACTAGAATGGTCAGCAACAGGTATGGGGAAAGTGCAGGGGAAGCAACTGAGCACGCATTTGCAACGGCAGGGCATTGTGCCAACACTGCTTGGAACATCTTCAAAATACGAAAGGCCATCAATCCAGCATCATCTGTCAAAACAGGAGTACTCAATGCTGCAAAAAATAAAAACAAAAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence

Protein Analysis

388

Amino Acids

42.25

Weight (kDa)

9.13

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 185 - 366 6.4e-39 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 1 cut(s) 371
AclWI GGATC 2 cut(s) 362, 829
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 3 cut(s) 47, 703, 778
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 1 cut(s) 1131
AfeI AGCGCT 1 cut(s) 478
AfiI CCNNNNNNNGG 2 cut(s) 855, 874
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 3 cut(s) 439, 745, 1084
AjnI CCWGG 2 cut(s) 157, 880
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 4 cut(s) 202, 378, 625, 741
AluI AGCT 4 cut(s) 202, 378, 625, 741
Alw21I GWGCWC 3 cut(s) 204, 447, 1035
AlwI GGATC 2 cut(s) 362, 829
AlwNI CAGNNNCTG 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 224
Aor13HI TCCGGA 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 478
AoxI GGCC 3 cut(s) 290, 549, 1095
ApeKI GCWGC 4 cut(s) 89, 932, 974, 1139
ApoI RAATTY 3 cut(s) 47, 703, 778
ArsI GACNNNNNNTTYG 2 cut(s) 763, 795
Asp700I GAANNNNTTC 3 cut(s) 233, 863, 1079
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 164, 287, 377
AvaI CYCGRG 1 cut(s) 224
BalI TGGCCA 1 cut(s) 551
BanII GRGCYC 1 cut(s) 204
BauI CACGAG 1 cut(s) 448
Bbv12I GWGCWC 3 cut(s) 204, 447, 1035
BbvI GCAGC 4 cut(s) 76, 919, 961, 1126
BccI CCATC 3 cut(s) 356, 794, 1106
BceAI ACGGC 2 cut(s) 191, 1062
BciT130I CCWGG 2 cut(s) 159, 882
BclI TGATCA 1 cut(s) 79
BfaI CTAG 3 cut(s) 197, 254, 984
BfoI RGCGCY 1 cut(s) 480
BglI GCCNNNNNGGC 1 cut(s) 962
BisI GCNGC 4 cut(s) 90, 933, 975, 1140
BlpI GCTNAGC 2 cut(s) 93, 374
BlsI GCNGC 4 cut(s) 91, 934, 976, 1141
BmcAI AGTACT 1 cut(s) 1131
Bme1390I CCNGG 2 cut(s) 159, 882
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 879
BmrFI CCNGG 2 cut(s) 159, 882
BmsI GCATC 4 cut(s) 152, 898, 919, 1118
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpmI CTGGAG 1 cut(s) 269
Bpu1102I GCTNAGC 2 cut(s) 93, 374
BsaBI GATNNNNATC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 157, 521, 552
BsaWI WCCGGW 2 cut(s) 394, 818
BsaXI ACNNNNNCTCC 6 cut(s) 129, 159, 329, 359, 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 855, 874
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 4 cut(s) 21, 286, 577, 659
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 159, 882
BseDI CCNNGG 3 cut(s) 157, 521, 552
BseGI GGATG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 855, 874
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 4 cut(s) 86, 107, 365, 1020
BseNI ACTGG 4 cut(s) 21, 286, 577, 659
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 4 cut(s) 76, 919, 961, 1126
BsgI GTGCAG 1 cut(s) 1035
BshFI GGCC 3 cut(s) 292, 551, 1097
BsiHKAI GWGCWC 3 cut(s) 204, 447, 1035
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 311, 395, 819
BslI CCNNNNNNNGG 2 cut(s) 855, 874
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 3 cut(s) 292, 551, 1097
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 204, 447, 1035
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 4 cut(s) 79, 367, 459, 821
Bsp1720I GCTNAGC 2 cut(s) 93, 374
BspACI CCGC 1 cut(s) 371
BspANI GGCC 3 cut(s) 292, 551, 1097
BspCNI CTCAG 4 cut(s) 85, 106, 366, 1021
BspEI TCCGGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 879
BspPI GGATC 2 cut(s) 362, 829
BsrDI GCAATG 1 cut(s) 613
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 4 cut(s) 21, 286, 577, 659
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 3 cut(s) 157, 521, 552
BssMI GATC 4 cut(s) 79, 367, 459, 821
BssSI CACGAG 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 159, 882
Bst4CI ACNGT 2 cut(s) 262, 383
Bst6I CTCTTC 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 204, 1035
BstDEI CTNAG 4 cut(s) 72, 93, 374, 1029
BstF5I GGATG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 4 cut(s) 82, 370, 462, 824
BstMBI GATC 4 cut(s) 79, 367, 459, 821
BstMWI GCNNNNNNNGC 6 cut(s) 860, 941, 962, 971, 1022, 1067
BstNI CCWGG 2 cut(s) 159, 882
BstSCI CCNGG 2 cut(s) 157, 880
BstV1I GCAGC 4 cut(s) 76, 919, 961, 1126
BsuRI GGCC 3 cut(s) 292, 551, 1097
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 3 cut(s) 293, 831, 1065
Cac8I GCNNGC 2 cut(s) 204, 1035
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 1130
CviAII CATG 3 cut(s) 178, 598, 874
CviQI GTAC 1 cut(s) 1130
DdeI CTNAG 4 cut(s) 72, 93, 374, 1029
DpnI GATC 4 cut(s) 81, 369, 461, 823
DpnII GATC 4 cut(s) 79, 367, 459, 821
DraI TTTAAA 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 204
Eco47III AGCGCT 1 cut(s) 478
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 202
EcoRII CCWGG 2 cut(s) 157, 880
EcoT14I CCWWGG 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 3 cut(s) 181, 601, 877
FatI CATG 3 cut(s) 177, 597, 873
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 4 cut(s) 90, 933, 975, 1140
FokI GGATG 1 cut(s) 174
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 4 cut(s) 90, 933, 975, 1140
FspBI CTAG 3 cut(s) 197, 254, 984
GlaI GCGC 1 cut(s) 478
GluI GCNGC 4 cut(s) 90, 933, 975, 1140
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 3 cut(s) 292, 551, 1097
HapII CCGG 3 cut(s) 311, 395, 819
HhaI GCGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 181, 601, 877
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 2 cut(s) 428, 591
HpaII CCGG 3 cut(s) 311, 395, 819
HphI GGTGA 3 cut(s) 164, 287, 377
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 522, 579, 587
Hpy188III TCNNGA 4 cut(s) 224, 226, 395, 425
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 2 cut(s) 212, 242
HpyAV CCTTC 5 cut(s) 179, 433, 502, 750, 853
HpyCH4III ACNGT 2 cut(s) 262, 383
HpyCH4IV ACGT 2 cut(s) 129, 748
HpyCH4V TGCA 9 cut(s) 103, 165, 334, 407, 563, 977, 1016, 1043, 1142
HpyF10VI GCNNNNNNNGC 6 cut(s) 860, 941, 962, 971, 1022, 1067
HpyF3I CTNAG 4 cut(s) 72, 93, 374, 1029
HpySE526I ACGT 2 cut(s) 129, 748
Hsp92II CATG 3 cut(s) 181, 601, 877
HspAI GCGC 1 cut(s) 477
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 79, 367, 459, 821
LmnI GCTCC 5 cut(s) 397, 442, 523, 630, 738
Lsp1109I GCAGC 4 cut(s) 76, 919, 961, 1126
LweI GCATC 4 cut(s) 152, 898, 919, 1118
MaeI CTAG 3 cut(s) 197, 254, 984
MaeII ACGT 2 cut(s) 129, 748
MaeIII GTNAC 3 cut(s) 385, 410, 814
MalI GATC 4 cut(s) 81, 369, 461, 823
MboI GATC 4 cut(s) 79, 367, 459, 821
MboII GAAGA 9 cut(s) 9, 194, 226, 290, 331, 334, 496, 586, 1072
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 3 cut(s) 204, 447, 1035
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 4 cut(s) 47, 558, 703, 778
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 1 cut(s) 422
Mox20I TGGCCA 1 cut(s) 551
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 3 cut(s) 233, 863, 1079
MscI TGGCCA 1 cut(s) 551
MseI TTAA 5 cut(s) 51, 296, 492, 843, 1165
Msp20I TGGCCA 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 3 cut(s) 311, 395, 819
MspR9I CCNGG 2 cut(s) 159, 882
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 863
MvaI CCWGG 2 cut(s) 159, 882
MwoI GCNNNNNNNGC 6 cut(s) 860, 941, 962, 971, 1022, 1067
NdeII GATC 4 cut(s) 79, 367, 459, 821
NlaIII CATG 3 cut(s) 181, 601, 877
NlaIV GGNNCC 1 cut(s) 879
NmuCI GTSAC 3 cut(s) 385, 410, 814
PaeR7I CTCGAG 1 cut(s) 224
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 455
PctI GAATGC 1 cut(s) 863
PdmI GAANNNNTTC 3 cut(s) 233, 863, 1079
PfeI GAWTC 1 cut(s) 591
PfoI TCCNGGA 1 cut(s) 880
PkrI GCNGC 4 cut(s) 91, 934, 976, 1141
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 157, 880
PspGI CCWGG 2 cut(s) 157, 880
PspN4I GGNNCC 1 cut(s) 879
PspPI GGNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 1131
RsaNI GTAC 1 cut(s) 1130
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 5 cut(s) 51, 296, 492, 843, 1165
SatI GCNGC 4 cut(s) 90, 933, 975, 1140
Sau3AI GATC 4 cut(s) 79, 367, 459, 821
Sau96I GGNCC 1 cut(s) 291
ScaI AGTACT 1 cut(s) 1131
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 2 cut(s) 159, 882
SduI GDGCHC 3 cut(s) 204, 447, 1035
SfaNI GCATC 4 cut(s) 152, 898, 919, 1118
Sfr274I CTCGAG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 224
SmiI ATTTAAAT 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 47, 558, 703, 778
SsiI CCGC 1 cut(s) 371
SspMI CTAG 3 cut(s) 197, 254, 984
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 157, 880
StyI CCWWGG 1 cut(s) 552
SwaI ATTTAAAT 1 cut(s) 52
TaaI ACNGT 2 cut(s) 262, 383
TaiI ACGT 2 cut(s) 132, 751
TaqI TCGA 2 cut(s) 225, 237
TasI AATT 4 cut(s) 47, 558, 703, 778
TatI WGTACW 1 cut(s) 1129
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 5 cut(s) 51, 296, 492, 843, 1165
Tru9I TTAA 5 cut(s) 51, 296, 492, 843, 1165
TscAI CASTG 3 cut(s) 293, 831, 1072
TseFI GTSAC 3 cut(s) 385, 410, 814
TseI GCWGC 4 cut(s) 89, 932, 974, 1139
Tsp45I GTSAC 3 cut(s) 385, 410, 814
TspDTI ATGAA 4 cut(s) 208, 586, 746, 845
TspRI CASTG 3 cut(s) 293, 831, 1072
XapI RAATTY 3 cut(s) 47, 703, 778
XhoI CTCGAG 1 cut(s) 224
XmnI GAANNNNTTC 3 cut(s) 233, 863, 1079
XspI CTAG 3 cut(s) 197, 254, 984
ZrmI AGTACT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.