MD15G1196300.v1.1

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0006695
Physical Location & Seq
Reverse (-)
15588839 .. 15592205
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1196300.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGGGTTGCTTCAGTCGGTCACGCAGTCCTAAGCCCAAAACCTCCCCTCCCACCTCACCTCCGCCGCAGTACCAAACCCAGAACCCTACTCAGCAATACCAACAACCCAAAAACCTCCAGCAGCAAGTCCTCTTCCGAATCCCAGGATGCAAAGTCCACCTCATGGACGAAGGAGAAACCCTAGAGCTCGCAAACGGCGACTTCGTCCTCGAAAACATCTTGGAAAACAACGTCTCGCTCGCCACCATAATCAAAGTCGGCGAAGAAATTCAGTGGCCGTTGACAAATGACGAGCCGGTTGTGAAGCTCGACGCTTTGCACTATCTCTTCTCCCTCCCCATGAAAGACGGCGATCCTCTGAGCTACGGCGTGACATTTCCCGACCAATACGAAAGTAACTTGGGGTTTCTGGACTCGTATTTGAAAGAACACTCTTGCTTTAGTACCACATCGACCAAGAATAATAATAAGGGGGTTGATTGGAAGGAGTATGCTCCAAGGATTGAAGATTATAATAATGTGTTGGCCAAAGCAATTGCAGGAGGGACTGGTCAGATTGTGAGGGGAATCTTTATGTGTAGCAATGCTTACACCAATCAGGTCCAAAAAGGAGGGGAAACGACATTGGCTCGTCCCGTGGAGGGGAAAAGTTATGTCAAAGAACAAGGAAGTAATAGCAGCGAAAGGTCTGCTGCGAAAAAGAAGAATGGAATCAACGTGAACTTAAAACGTGTGAAAAATTTGTCAAAGATGACATCAGAGCTGAGCAAATCTATGCTTGATGGGGTTGGTATTGTGACCGGATCGGTGATGGGTCCGGTGGTTAATTCCCAAGCAGGGAAGGCATTCTTTGCCATGGTTCCGGGAGAGGTCCTCTTGGCTTCACTTGATGGCATCAATAAGATTTTGGATGCAGCTGAAGTTGCTGAGAAACAAGCTCTTTCTGCCACCTCAGGTGCTGCAACTAGAATGGTCAGCAACAGGTTTGGGGAGAGTGCAGGGGAGACAACCGAGGATGTGTTTGCAACAACAGGGCATATTGCTAACACTGCTTGGAACATCTTCAAAATTAGAAAGGCCATCAATCCAGCCTCATCTGTCAAAACAGGAGTACTCAAGAATGCTGCCAAAAGTAGAAACCAATATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence

Protein Analysis

384

Amino Acids

41.6

Weight (kDa)

8.8

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 177 - 377 1.8e-36 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AccB7I CCANNNNNTGG 1 cut(s) 163
AciI CCGC 2 cut(s) 62, 65
AclWI GGATC 2 cut(s) 347, 811
AcoI YGGCCR 2 cut(s) 275, 525
AcsI RAATTY 2 cut(s) 267, 739
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 3 cut(s) 71, 445, 1113
AfiI CCNNNNNNNGG 4 cut(s) 163, 641, 642, 837
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 3 cut(s) 424, 506, 1066
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 6 cut(s) 187, 307, 363, 763, 917, 938
AluI AGCT 6 cut(s) 187, 307, 363, 763, 917, 938
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 238, 998
AlwI GGATC 2 cut(s) 347, 811
AlwNI CAGNNNCTG 1 cut(s) 959
AoxI GGCC 3 cut(s) 275, 525, 1077
ApeKI GCWGC 6 cut(s) 121, 678, 692, 914, 959, 1124
ApoI RAATTY 2 cut(s) 267, 739
Asp700I GAANNNNTTC 3 cut(s) 267, 845, 1061
AspS9I GGNCC 3 cut(s) 601, 815, 871
AsuC2I CCSGG 1 cut(s) 864
AsuHPI GGTGA 2 cut(s) 48, 820
AvaII GGWCC 3 cut(s) 601, 815, 871
AxyI CCTNAGG 1 cut(s) 952
BalI TGGCCA 1 cut(s) 527
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 6 cut(s) 133, 679, 690, 926, 946, 1111
BccI CCATC 4 cut(s) 776, 805, 884, 1088
BceAI ACGGC 4 cut(s) 211, 262, 364, 382
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 864
BcoDI GTCTC 2 cut(s) 238, 998
BfaI CTAG 2 cut(s) 182, 966
BisI GCNGC 7 cut(s) 65, 122, 679, 693, 915, 960, 1125
BlpI GCTNAGC 1 cut(s) 764
BlsI GCNGC 7 cut(s) 66, 123, 680, 694, 916, 961, 1126
BmcAI AGTACT 1 cut(s) 1113
Bme1390I CCNGG 2 cut(s) 144, 864
Bme18I GGWCC 3 cut(s) 601, 815, 871
BmgT120I GGNCC 3 cut(s) 601, 815, 871
BmiI GGNNCC 2 cut(s) 816, 861
BmrFI CCNGG 2 cut(s) 144, 864
BmsI GCATC 3 cut(s) 137, 901, 903
BplI GAGNNNNNCTC 2 cut(s) 858, 890
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 764
BpuEI CTTGAG 1 cut(s) 1100
BpuMI CCSGG 1 cut(s) 864
BsaJI CCNNGG 5 cut(s) 142, 497, 636, 855, 1011
BsaWI WCCGGW 2 cut(s) 800, 817
BsaXI ACNNNNNCTCC 4 cut(s) 31, 43, 61, 73
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 641, 642, 837
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 553
Bse21I CCTNAGG 1 cut(s) 952
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 5 cut(s) 142, 497, 636, 855, 1011
BseGI GGATG 3 cut(s) 152, 916, 1021
BseLI CCNNNNNNNGG 4 cut(s) 163, 641, 642, 837
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 5 cut(s) 104, 350, 755, 918, 966
BseNI ACTGG 1 cut(s) 553
BseXI GCAGC 6 cut(s) 133, 679, 690, 926, 946, 1111
BsgI GTGCAG 1 cut(s) 1017
BshFI GGCC 3 cut(s) 277, 527, 1079
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 4 cut(s) 296, 801, 818, 863
BslFI GGGAC 2 cut(s) 559, 618
BslI CCNNNNNNNGG 4 cut(s) 163, 641, 642, 837
BsmAI GTCTC 2 cut(s) 238, 998
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 559, 618
BsmI GAATGC 2 cut(s) 845, 1126
BsnI GGCC 3 cut(s) 277, 527, 1079
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 352, 803
Bsp1720I GCTNAGC 1 cut(s) 764
Bsp19I CCATGG 1 cut(s) 855
BspACI CCGC 2 cut(s) 62, 65
BspANI GGCC 3 cut(s) 277, 527, 1079
BspCNI CTCAG 5 cut(s) 103, 351, 756, 919, 965
BspLI GGNNCC 2 cut(s) 816, 861
BspPI GGATC 2 cut(s) 347, 811
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 5 cut(s) 142, 497, 636, 855, 1011
BssMI GATC 2 cut(s) 352, 803
BssT1I CCWWGG 2 cut(s) 497, 855
Bst2UI CCWGG 1 cut(s) 144
Bst6I CTCTTC 2 cut(s) 137, 332
BstAPI GCANNNNNTGC 1 cut(s) 851
BstC8I GCNNGC 2 cut(s) 189, 240
BstDEI CTNAG 6 cut(s) 30, 90, 359, 764, 927, 952
BstDSI CCRYGG 2 cut(s) 636, 855
BstF5I GGATG 3 cut(s) 152, 916, 1021
BstKTI GATC 2 cut(s) 355, 806
BstMAI GTCTC 2 cut(s) 238, 998
BstMBI GATC 2 cut(s) 352, 803
BstMWI GCNNNNNNNGC 5 cut(s) 842, 851, 923, 944, 1049
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 142, 862
BstV1I GCAGC 6 cut(s) 133, 679, 690, 926, 946, 1111
Bsu36I CCTNAGG 1 cut(s) 952
BsuRI GGCC 3 cut(s) 277, 527, 1079
BtgI CCRYGG 2 cut(s) 636, 855
BtsCI GGATG 3 cut(s) 152, 916, 1021
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 2 cut(s) 278, 1047
Cac8I GCNNGC 2 cut(s) 189, 240
CaiI CAGNNNCTG 1 cut(s) 959
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 3 cut(s) 601, 815, 871
CseI GACGC 1 cut(s) 320
Csp6I GTAC 3 cut(s) 70, 444, 1112
CviAII CATG 3 cut(s) 163, 340, 856
CviQI GTAC 3 cut(s) 70, 444, 1112
DdeI CTNAG 6 cut(s) 30, 90, 359, 764, 927, 952
DpnI GATC 2 cut(s) 354, 805
DpnII GATC 2 cut(s) 352, 803
EaeI YGGCCR 2 cut(s) 275, 525
Eam1104I CTCTTC 2 cut(s) 137, 332
EarI CTCTTC 2 cut(s) 137, 332
EciI GGCGGA 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 497, 855
Eco24I GRGCYC 1 cut(s) 189
Eco47I GGWCC 3 cut(s) 601, 815, 871
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 939
Eco81I CCTNAGG 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 871
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 2 cut(s) 497, 855
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 2 cut(s) 497, 855
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 3 cut(s) 166, 343, 859
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FaqI GGGAC 2 cut(s) 559, 618
FatI CATG 3 cut(s) 162, 339, 855
Fnu4HI GCNGC 7 cut(s) 65, 122, 679, 693, 915, 960, 1125
FokI GGATG 3 cut(s) 159, 923, 1028
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 7 cut(s) 65, 122, 679, 693, 915, 960, 1125
FspBI CTAG 2 cut(s) 182, 966
GluI GCNGC 7 cut(s) 65, 122, 679, 693, 915, 960, 1125
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 3 cut(s) 277, 527, 1079
HapII CCGG 4 cut(s) 296, 801, 818, 863
HgaI GACGC 1 cut(s) 320
Hin1II CATG 3 cut(s) 166, 343, 859
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 4 cut(s) 138, 413, 567, 711
HpaII CCGG 4 cut(s) 296, 801, 818, 863
HphI GGTGA 2 cut(s) 48, 820
Hpy166II GTNNAC 3 cut(s) 157, 282, 721
Hpy188I TCNGA 4 cut(s) 137, 360, 555, 760
Hpy188III TCNNGA 3 cut(s) 380, 410, 1117
Hpy8I GTNNAC 3 cut(s) 157, 282, 721
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 164, 478, 835
HpyCH4IV ACGT 3 cut(s) 231, 717, 730
HpyCH4V TGCA 7 cut(s) 150, 319, 539, 914, 962, 998, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 842, 851, 923, 944, 1049
HpyF3I CTNAG 6 cut(s) 30, 90, 359, 764, 927, 952
HpySE526I ACGT 3 cut(s) 231, 717, 730
Hsp92II CATG 3 cut(s) 166, 343, 859
Kzo9I GATC 2 cut(s) 352, 803
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 6 cut(s) 133, 679, 690, 926, 946, 1111
LweI GCATC 3 cut(s) 137, 901, 903
MaeI CTAG 2 cut(s) 182, 966
MaeII ACGT 3 cut(s) 231, 717, 730
MaeIII GTNAC 4 cut(s) 18, 370, 395, 796
MalI GATC 2 cut(s) 354, 805
MboI GATC 2 cut(s) 352, 803
MboII GAAGA 6 cut(s) 124, 275, 319, 518, 715, 1054
MfeI CAATTG 1 cut(s) 534
MhlI GDGCHC 1 cut(s) 189
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 5 cut(s) 267, 534, 739, 826, 1068
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 1 cut(s) 407
Mox20I TGGCCA 1 cut(s) 527
MroXI GAANNNNTTC 3 cut(s) 267, 845, 1061
MscI TGGCCA 1 cut(s) 527
MseI TTAA 3 cut(s) 725, 825, 1150
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 4 cut(s) 296, 801, 818, 863
MspR9I CCNGG 2 cut(s) 144, 864
MunI CAATTG 1 cut(s) 534
Mva1269I GAATGC 2 cut(s) 845, 1126
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 5 cut(s) 842, 851, 923, 944, 1049
NciI CCSGG 1 cut(s) 864
NcoI CCATGG 1 cut(s) 855
NdeII GATC 2 cut(s) 352, 803
NlaIII CATG 3 cut(s) 166, 343, 859
NlaIV GGNNCC 2 cut(s) 816, 861
NmuCI GTSAC 3 cut(s) 18, 370, 796
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 201
PctI GAATGC 2 cut(s) 845, 1126
PdmI GAANNNNTTC 3 cut(s) 267, 845, 1061
PfeI GAWTC 3 cut(s) 138, 567, 711
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 862
PkrI GCNGC 7 cut(s) 66, 123, 680, 694, 916, 961, 1126
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 871
PsiI TTATAA 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 871
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 816, 861
PspPI GGNCC 3 cut(s) 601, 815, 871
PspPPI RGGWCCY 1 cut(s) 871
PstNI CAGNNNCTG 1 cut(s) 959
PsyI GACNNNGTC 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 71, 445, 1113
RsaNI GTAC 3 cut(s) 70, 444, 1112
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 3 cut(s) 725, 825, 1150
SatI GCNGC 7 cut(s) 65, 122, 679, 693, 915, 960, 1125
Sau3AI GATC 2 cut(s) 352, 803
Sau96I GGNCC 3 cut(s) 601, 815, 871
ScaI AGTACT 1 cut(s) 1113
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 2 cut(s) 144, 864
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 3 cut(s) 137, 901, 903
SinI GGWCC 3 cut(s) 601, 815, 871
SmlI CTYRAG 1 cut(s) 1115
SmoI CTYRAG 1 cut(s) 1115
Sse9I AATT 5 cut(s) 267, 534, 739, 826, 1068
SsiI CCGC 2 cut(s) 62, 65
SspMI CTAG 2 cut(s) 182, 966
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 142, 862
StyI CCWWGG 2 cut(s) 497, 855
TaiI ACGT 3 cut(s) 234, 720, 733
TaqI TCGA 3 cut(s) 210, 309, 452
TaqII GACCGA 1 cut(s) 6
TasI AATT 5 cut(s) 267, 534, 739, 826, 1068
TatI WGTACW 1 cut(s) 1111
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 138, 567, 711
Tru1I TTAA 3 cut(s) 725, 825, 1150
Tru9I TTAA 3 cut(s) 725, 825, 1150
TscAI CASTG 2 cut(s) 278, 1054
TseFI GTSAC 3 cut(s) 18, 370, 796
TseI GCWGC 6 cut(s) 121, 678, 692, 914, 959, 1124
Tsp45I GTSAC 3 cut(s) 18, 370, 796
TspDTI ATGAA 1 cut(s) 356
TspRI CASTG 2 cut(s) 278, 1054
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 3 cut(s) 601, 815, 871
XapI RAATTY 2 cut(s) 267, 739
XmnI GAANNNNTTC 3 cut(s) 267, 845, 1061
XspI CTAG 2 cut(s) 182, 966
ZrmI AGTACT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.