Rh2CG067000

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006695
Physical Location & Seq
Reverse (-)
5573400 .. 5576245
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG067000.1

Sequence Viewer

Length: 993 bp
ATGGGTTGCTTCGGTTCTTCCAGTTCCAAATCCAAATTTAAATCCACCACCAACACATCTCAGTATGATCAGACTGCTGCTCAGCCTCTGCAATACCACGAACCTCCCAACAAAAACGTCCAGCAACAAATCCTCCTACAAATCCCAGGATGCAGAGTTCACCTCATGGAAGAAGGAGAAGCCCTAGAGCTCGCCGTCGGCGAGTTCATTCTCGAGAACATCTTCGACGAGAACATATCTCTAGCCACCGTTATCAAAATCGGTGAAGAACTCCAGTGGCCCTTAACGAAAGACGAGCCAGTTGTGAAGATAGATGATTTGCACTACCTCTTCTCCTTGCCGATGAGAGATGGTGATCCTCTGAGCTACGGTGTGACCTTTCCGGAGCAGTATGCAAGTCACTTGGAATTTCTGGACTCCTTTTTGAAGGAGCACTCGTGCTTTACGATCACTTCCAATAGTAGCGCTACGAAGAATGTTAAGGGAGTTGATTGGAAGGAGTATGCTCCGAGGATTGATGACTATAACAATGTGTTGGCCAAGGCAATTGCAGGAGGAACTGGTCAGATTGTCAGAGGAATCTTCATGTGTAGCAATGCTTATGCTAATCAGCTCCATAAAGGAGGGGAAACGACATTGGCTCGTCCAGTTGAGGAGAAAAGATATGGGAAACAAGAAAGTCATAGCAAAAATTCTAATGCCACAAACAAGAGTGGAATGAACAGGAGCTTGAAACGTGTGAGAAGGTTGTCAAAGATGACATCAAATTTGAGCAAATCTATGCTTGATGGGGTTGGTCTTGTGACCGGATCAGTGATGAAACCTGTGGTTAAATCCCAAGCAGGGAAGGCATTCCTAAACATGGTTCCAGGACAAGTCCTCTTGGCTTCACTTGATGCTATCAACAAGATTTTAGATGCTGCTGAAGTTGCCGAAAAACAAGCCCTTTCGGCTACCTCTGCTGCAACAACTAGAATGGTCAGCAACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence

Protein Analysis

330

Amino Acids

36.24

Weight (kDa)

8.21

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 181 - 330 1.2e-25 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 382
AclWI GGATC 2 cut(s) 350, 817
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 4 cut(s) 35, 407, 691, 766
AcuI CTGAAG 1 cut(s) 945
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 2 cut(s) 843, 862
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 2 cut(s) 427, 733
AjnI CCWGG 2 cut(s) 145, 868
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 4 cut(s) 190, 366, 613, 729
AluI AGCT 4 cut(s) 190, 366, 613, 729
Alw21I GWGCWC 2 cut(s) 192, 435
AlwI GGATC 2 cut(s) 350, 817
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 2 cut(s) 278, 537
ApeKI GCWGC 3 cut(s) 77, 920, 962
ApoI RAATTY 4 cut(s) 35, 407, 691, 766
ArsI GACNNNNNNTTYG 2 cut(s) 751, 783
Asp700I GAANNNNTTC 2 cut(s) 221, 851
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 3 cut(s) 152, 275, 365
AvaI CYCGRG 1 cut(s) 212
BalI TGGCCA 1 cut(s) 539
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 436
Bbv12I GWGCWC 2 cut(s) 192, 435
BbvI GCAGC 3 cut(s) 64, 907, 949
BccI CCATC 2 cut(s) 344, 782
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 147, 870
BclI TGATCA 1 cut(s) 67
BfaI CTAG 3 cut(s) 185, 242, 972
BfoI RGCGCY 1 cut(s) 468
BglI GCCNNNNNGGC 1 cut(s) 950
BisI GCNGC 3 cut(s) 78, 921, 963
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 3 cut(s) 79, 922, 964
Bme1390I CCNGG 2 cut(s) 147, 870
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 2 cut(s) 147, 870
BmsI GCATC 3 cut(s) 140, 886, 907
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BpmI CTGGAG 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 145, 509, 540
BsaWI WCCGGW 2 cut(s) 382, 806
BsaXI ACNNNNNCTCC 6 cut(s) 117, 147, 317, 347, 422, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 843, 862
Bse1I ACTGG 5 cut(s) 21, 274, 299, 565, 647
Bse3DI GCAATG 1 cut(s) 601
Bse8I GATNNNNATC 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 2 cut(s) 147, 870
BseDI CCNNGG 3 cut(s) 145, 509, 540
BseGI GGATG 1 cut(s) 155
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 843, 862
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 3 cut(s) 74, 95, 353
BseNI ACTGG 5 cut(s) 21, 274, 299, 565, 647
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 3 cut(s) 64, 907, 949
BshFI GGCC 2 cut(s) 280, 539
BsiHKAI GWGCWC 2 cut(s) 192, 435
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 383, 807
BslI CCNNNNNNNGG 2 cut(s) 843, 862
BsmI GAATGC 1 cut(s) 851
BsnI GGCC 2 cut(s) 280, 539
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 192, 435
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 4 cut(s) 67, 355, 447, 809
Bsp1720I GCTNAGC 1 cut(s) 81
BspANI GGCC 2 cut(s) 280, 539
BspCNI CTCAG 3 cut(s) 73, 94, 354
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 867
BspPI GGATC 2 cut(s) 350, 817
BsrDI GCAATG 1 cut(s) 601
BsrI ACTGG 5 cut(s) 21, 274, 299, 565, 647
BssECI CCNNGG 3 cut(s) 145, 509, 540
BssMI GATC 4 cut(s) 67, 355, 447, 809
BssSI CACGAG 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 436
Bst2UI CCWGG 2 cut(s) 147, 870
Bst4CI ACNGT 2 cut(s) 250, 371
Bst6I CTCTTC 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 60, 81, 362
BstF5I GGATG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 70, 358, 450, 812
BstMBI GATC 4 cut(s) 67, 355, 447, 809
BstMWI GCNNNNNNNGC 4 cut(s) 848, 929, 950, 959
BstNI CCWGG 2 cut(s) 147, 870
BstSCI CCNGG 2 cut(s) 145, 868
BstV1I GCAGC 3 cut(s) 64, 907, 949
BsuRI GGCC 2 cut(s) 280, 539
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 281, 819
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 279
CviAII CATG 3 cut(s) 166, 586, 862
DdeI CTNAG 3 cut(s) 60, 81, 362
DpnI GATC 4 cut(s) 69, 357, 449, 811
DpnII GATC 4 cut(s) 67, 355, 447, 809
DraI TTTAAA 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 192
Eco47III AGCGCT 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 145, 868
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 3 cut(s) 169, 589, 865
FatI CATG 3 cut(s) 165, 585, 861
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 78, 921, 963
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 3 cut(s) 78, 921, 963
FspBI CTAG 3 cut(s) 185, 242, 972
GlaI GCGC 1 cut(s) 466
GluI GCNGC 3 cut(s) 78, 921, 963
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 2 cut(s) 280, 539
HapII CCGG 2 cut(s) 383, 807
HhaI GCGC 1 cut(s) 467
Hin1II CATG 3 cut(s) 169, 589, 865
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 2 cut(s) 416, 579
HpaII CCGG 2 cut(s) 383, 807
HphI GGTGA 3 cut(s) 152, 275, 365
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 5 cut(s) 72, 363, 510, 567, 575
Hpy188III TCNNGA 4 cut(s) 212, 214, 383, 413
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 200, 230
HpyAV CCTTC 5 cut(s) 167, 421, 490, 738, 841
HpyCH4III ACNGT 2 cut(s) 250, 371
HpyCH4IV ACGT 2 cut(s) 117, 736
HpyCH4V TGCA 6 cut(s) 91, 153, 322, 395, 551, 965
HpyF10VI GCNNNNNNNGC 4 cut(s) 848, 929, 950, 959
HpyF3I CTNAG 3 cut(s) 60, 81, 362
HpySE526I ACGT 2 cut(s) 117, 736
Hsp92II CATG 3 cut(s) 169, 589, 865
HspAI GCGC 1 cut(s) 465
Kpn2I TCCGGA 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 67, 355, 447, 809
LmnI GCTCC 5 cut(s) 385, 430, 511, 618, 726
Lsp1109I GCAGC 3 cut(s) 64, 907, 949
LweI GCATC 3 cut(s) 140, 886, 907
MaeI CTAG 3 cut(s) 185, 242, 972
MaeII ACGT 2 cut(s) 117, 736
MaeIII GTNAC 3 cut(s) 373, 398, 802
MalI GATC 4 cut(s) 69, 357, 449, 811
MboI GATC 4 cut(s) 67, 355, 447, 809
MboII GAAGA 8 cut(s) 9, 182, 214, 278, 319, 322, 484, 574
MfeI CAATTG 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 192, 435
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 5 cut(s) 35, 407, 546, 691, 766
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 1 cut(s) 410
Mox20I TGGCCA 1 cut(s) 539
MroI TCCGGA 1 cut(s) 382
MroXI GAANNNNTTC 2 cut(s) 221, 851
MscI TGGCCA 1 cut(s) 539
MseI TTAA 4 cut(s) 39, 284, 480, 831
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 2 cut(s) 383, 807
MspR9I CCNGG 2 cut(s) 147, 870
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 1 cut(s) 851
MvaI CCWGG 2 cut(s) 147, 870
MwoI GCNNNNNNNGC 4 cut(s) 848, 929, 950, 959
NdeII GATC 4 cut(s) 67, 355, 447, 809
NlaIII CATG 3 cut(s) 169, 589, 865
NlaIV GGNNCC 1 cut(s) 867
NmuCI GTSAC 3 cut(s) 373, 398, 802
PaeR7I CTCGAG 1 cut(s) 212
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 443
PctI GAATGC 1 cut(s) 851
PdmI GAANNNNTTC 2 cut(s) 221, 851
PfeI GAWTC 1 cut(s) 579
PfoI TCCNGGA 1 cut(s) 868
PkrI GCNGC 3 cut(s) 79, 922, 964
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 145, 868
PspGI CCWGG 2 cut(s) 145, 868
PspN4I GGNNCC 1 cut(s) 867
PspPI GGNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 88
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 4 cut(s) 39, 284, 480, 831
SatI GCNGC 3 cut(s) 78, 921, 963
Sau3AI GATC 4 cut(s) 67, 355, 447, 809
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 147, 870
SduI GDGCHC 2 cut(s) 192, 435
SfaNI GCATC 3 cut(s) 140, 886, 907
Sfr274I CTCGAG 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 212
SmiI ATTTAAAT 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 5 cut(s) 35, 407, 546, 691, 766
SspMI CTAG 3 cut(s) 185, 242, 972
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 145, 868
StyI CCWWGG 1 cut(s) 540
SwaI ATTTAAAT 1 cut(s) 40
TaaI ACNGT 2 cut(s) 250, 371
TaiI ACGT 2 cut(s) 120, 739
TaqI TCGA 2 cut(s) 213, 225
TasI AATT 5 cut(s) 35, 407, 546, 691, 766
TfiI GAWTC 1 cut(s) 579
Tru1I TTAA 4 cut(s) 39, 284, 480, 831
Tru9I TTAA 4 cut(s) 39, 284, 480, 831
TscAI CASTG 2 cut(s) 281, 819
TseFI GTSAC 3 cut(s) 373, 398, 802
TseI GCWGC 3 cut(s) 77, 920, 962
Tsp45I GTSAC 3 cut(s) 373, 398, 802
TspDTI ATGAA 4 cut(s) 196, 574, 734, 833
TspRI CASTG 2 cut(s) 281, 819
XapI RAATTY 4 cut(s) 35, 407, 691, 766
XhoI CTCGAG 1 cut(s) 212
XmnI GAANNNNTTC 2 cut(s) 221, 851
XspI CTAG 3 cut(s) 185, 242, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.