FvH4_1g06090

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006695
Physical Location & Seq
Reverse (-)
3243534 .. 3246293
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06090.t5

Sequence Viewer

Length: 1149 bp
ATGGGTTGCTTCAGTTGTTCCAGTTCCAAATCCAAATCCAAAGCTGCCACCAGTACATCTCAGTATGATCAAACTGGTACTCAGCCTCTGCAATACCAAGAACCCCCCAGCAAAAACATCCAGCAACAAATCCTCCTGCAAATCCCAGGATGCAGAGTTCACATCATGGAAGAAGGAGAAGCCCTAGAGCTAGCCGTCGGCGAGTTCATACTCGAGAACATCTTCGACGAAAACATTTCTCTGGCCACCATTATCAAAGTCGGTGAAGAACTCCAGTGGCCCTTGACGAAAGACGAGCCAGTAGTGAAGATAGATGATTTGAACTACCTCTTCTCTATTCCCATGAGAGATGGTGATCCTCTGAGCTACGGTGTAACTTTTCCGGAGCAGTATGCGAGTCACTTGGGATTTCTGGACTCGTTTTTGAAGGAATACTCGTGCTTTACGATCACTTCAAATAGTAGCGCTACGAAGAATATTAAGGGTGTTGATTGGAAGGAGTATGCTCCGAGGATTGAGGACTATAACAATGTGTTGGCCAAGGCAATTGCAGGAGGGACTGGTCAGATTGTCAGGGGAATCTTCATGTGTAGCAATGCTTATGCCAATCAGCTCCATAAAGGTGGGGAAACGACATTGGCTCGTCCAGTTGAGGAGAAAAGGTATGCGAAACAAGAAAGCCATGGCAAACATTCTAATGCCACAAACAAGAGTGGGATGAACAAGAGCTTGAAACGTGCCAGAAGGTTGTCAAAGATGACATCAAAGTTGAGCAAGTCTATGCTTGATGGAGTTGGTCTCGTGACCGGATCAGTGATGACACCAGTGGTTAAATCCCAAGCAGGGAAGGCATTTCTAAACATGGTTCCAGGACAAGTCCTCTTGGCTTCACTTGATGCTATCAACAAGATTTTAGATGCTGCTGAAGTTGCTGAACAACAAGCCCTTTCGGCTACCTCTGCTGCAACAACTAGAATGGTCAGCAACAGGTATGGGGAAAGTGCAGGAGAAGCAACTGAGCATGCATTTGCAACGGTGGGGCATTGTGCTAACACTGCTTGGAACATCTTCAAAATACGAAAGGCCATCAATCCAGCATCAGCTGTCAAAACAGGAGTACTCAAGACTGCAAAAACCAGAAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence

Protein Analysis

383

Amino Acids

41.53

Weight (kDa)

8.83

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 181 - 303 3.7e-16 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 382
AclWI GGATC 2 cut(s) 350, 817
AcoI YGGCCR 2 cut(s) 243, 537
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 3 cut(s) 55, 79, 1119
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 843
AgsI TTSAA 5 cut(s) 322, 427, 456, 733, 1072
AjnI CCWGG 2 cut(s) 145, 868
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 6 cut(s) 44, 190, 366, 613, 729, 1103
AluI AGCT 6 cut(s) 44, 190, 366, 613, 729, 1103
Alw26I GTCTC 1 cut(s) 803
AlwI GGATC 2 cut(s) 350, 817
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 4 cut(s) 243, 278, 537, 1083
ApeKI GCWGC 3 cut(s) 44, 920, 962
Asp700I GAANNNNTTC 2 cut(s) 221, 1067
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 275, 365
AsuNHI GCTAGC 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 212
BalI TGGCCA 2 cut(s) 245, 539
BauI CACGAG 2 cut(s) 436, 800
BbvI GCAGC 3 cut(s) 31, 907, 949
BccI CCATC 3 cut(s) 344, 782, 1094
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 147, 870
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 3 cut(s) 185, 191, 972
BfoI RGCGCY 1 cut(s) 468
BglI GCCNNNNNGGC 1 cut(s) 950
BisI GCNGC 3 cut(s) 45, 921, 963
BlsI GCNGC 3 cut(s) 46, 922, 964
BmcAI AGTACT 1 cut(s) 1119
Bme1390I CCNGG 2 cut(s) 147, 870
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 2 cut(s) 147, 870
BmsI GCATC 4 cut(s) 140, 886, 907, 1106
BmtI GCTAGC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 783, 815
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 1106
BsaBI GATNNNNATC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 4 cut(s) 145, 509, 540, 682
BsaWI WCCGGW 2 cut(s) 382, 806
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 647, 677
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse1I ACTGG 8 cut(s) 21, 51, 79, 274, 299, 565, 647, 824
Bse3DI GCAATG 1 cut(s) 601
Bse8I GATNNNNATC 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 2 cut(s) 147, 870
BseDI CCNNGG 4 cut(s) 145, 509, 540, 682
BseGI GGATG 3 cut(s) 117, 155, 723
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 4 cut(s) 74, 95, 353, 1008
BseNI ACTGG 8 cut(s) 21, 51, 79, 274, 299, 565, 647, 824
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 3 cut(s) 31, 907, 949
BseYI CCCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 1023
BshFI GGCC 4 cut(s) 245, 280, 539, 1085
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 383, 807
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 571
BsnI GGCC 4 cut(s) 245, 280, 539, 1085
Bso31I GGTCTC 1 cut(s) 803
BsoBI CYCGRG 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 4 cut(s) 67, 355, 447, 809
Bsp19I CCATGG 1 cut(s) 682
BspANI GGCC 4 cut(s) 245, 280, 539, 1085
BspCNI CTCAG 4 cut(s) 73, 94, 354, 1009
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 867
BspOI GCTAGC 1 cut(s) 194
BspPI GGATC 2 cut(s) 350, 817
BspTNI GGTCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 601
BsrI ACTGG 8 cut(s) 21, 51, 79, 274, 299, 565, 647, 824
BssECI CCNNGG 4 cut(s) 145, 509, 540, 682
BssMI GATC 4 cut(s) 67, 355, 447, 809
BssSI CACGAG 2 cut(s) 436, 800
BssT1I CCWWGG 2 cut(s) 540, 682
Bst2BI CACGAG 2 cut(s) 436, 800
Bst2UI CCWGG 2 cut(s) 147, 870
Bst4CI ACNGT 2 cut(s) 371, 1036
Bst6I CTCTTC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 192, 1023
BstDEI CTNAG 4 cut(s) 60, 81, 362, 1017
BstDSI CCRYGG 1 cut(s) 682
BstF5I GGATG 3 cut(s) 117, 155, 723
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 70, 358, 450, 812
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 4 cut(s) 67, 355, 447, 809
BstMWI GCNNNNNNNGC 6 cut(s) 848, 929, 950, 959, 1010, 1055
BstNI CCWGG 2 cut(s) 147, 870
BstNSI RCATGY 1 cut(s) 1025
BstSCI CCNGG 2 cut(s) 145, 868
BstV1I GCAGC 3 cut(s) 31, 907, 949
BstXI CCANNNNNNTGG 1 cut(s) 623
BsuRI GGCC 4 cut(s) 245, 280, 539, 1085
BtgI CCRYGG 1 cut(s) 682
BtsCI GGATG 3 cut(s) 117, 155, 723
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 4 cut(s) 281, 819, 831, 1053
Cac8I GCNNGC 2 cut(s) 192, 1023
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 3 cut(s) 54, 78, 1118
CviAII CATG 6 cut(s) 166, 343, 586, 683, 862, 1022
CviQI GTAC 3 cut(s) 54, 78, 1118
DdeI CTNAG 4 cut(s) 60, 81, 362, 1017
DpnI GATC 4 cut(s) 69, 357, 449, 811
DpnII GATC 4 cut(s) 67, 355, 447, 809
EaeI YGGCCR 2 cut(s) 243, 537
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 2 cut(s) 540, 682
Eco31I GGTCTC 1 cut(s) 803
Eco47III AGCGCT 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 145, 868
EcoT14I CCWWGG 2 cut(s) 540, 682
EcoT22I ATGCAT 1 cut(s) 1027
ErhI CCWWGG 2 cut(s) 540, 682
FaeI CATG 6 cut(s) 169, 346, 589, 686, 865, 1025
FaqI GGGAC 1 cut(s) 571
FatI CATG 6 cut(s) 165, 342, 585, 682, 861, 1021
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 45, 921, 963
FokI GGATG 3 cut(s) 104, 162, 730
Fsp4HI GCNGC 3 cut(s) 45, 921, 963
FspBI CTAG 3 cut(s) 185, 191, 972
GlaI GCGC 1 cut(s) 466
GluI GCNGC 3 cut(s) 45, 921, 963
GsaI CCCAGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 4 cut(s) 245, 280, 539, 1085
HapII CCGG 2 cut(s) 383, 807
HhaI GCGC 1 cut(s) 467
Hin1II CATG 6 cut(s) 169, 346, 589, 686, 865, 1025
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 3 cut(s) 397, 416, 579
HpaII CCGG 2 cut(s) 383, 807
HphI GGTGA 2 cut(s) 275, 365
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 363, 510, 567
Hpy188III TCNNGA 5 cut(s) 214, 383, 413, 802, 1123
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 200, 230
HpyAV CCTTC 5 cut(s) 167, 421, 490, 738, 841
HpyCH4III ACNGT 2 cut(s) 371, 1036
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 9 cut(s) 91, 139, 153, 551, 965, 1004, 1025, 1031, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 848, 929, 950, 959, 1010, 1055
HpyF3I CTNAG 4 cut(s) 60, 81, 362, 1017
HpySE526I ACGT 1 cut(s) 736
Hsp92II CATG 6 cut(s) 169, 346, 589, 686, 865, 1025
HspAI GCGC 1 cut(s) 465
Kpn2I TCCGGA 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 67, 355, 447, 809
LmnI GCTCC 3 cut(s) 385, 511, 618
Lsp1109I GCAGC 3 cut(s) 31, 907, 949
LweI GCATC 4 cut(s) 140, 886, 907, 1106
MaeI CTAG 3 cut(s) 185, 191, 972
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 3 cut(s) 373, 398, 802
MalI GATC 4 cut(s) 69, 357, 449, 811
MboI GATC 4 cut(s) 67, 355, 447, 809
MboII GAAGA 8 cut(s) 182, 214, 278, 319, 322, 484, 574, 1060
MfeI CAATTG 1 cut(s) 546
MlsI TGGCCA 2 cut(s) 245, 539
MluCI AATT 1 cut(s) 546
MluNI TGGCCA 2 cut(s) 245, 539
MlyI GAGTC 2 cut(s) 406, 410
Mox20I TGGCCA 2 cut(s) 245, 539
Mph1103I ATGCAT 1 cut(s) 1027
MroI TCCGGA 1 cut(s) 382
MroXI GAANNNNTTC 2 cut(s) 221, 1067
MscI TGGCCA 2 cut(s) 245, 539
MseI TTAA 3 cut(s) 480, 831, 1147
MslI CAYNNNNRTG 2 cut(s) 621, 696
Msp20I TGGCCA 2 cut(s) 245, 539
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 2 cut(s) 383, 807
MspR9I CCNGG 2 cut(s) 147, 870
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 2 cut(s) 147, 870
MwoI GCNNNNNNNGC 6 cut(s) 848, 929, 950, 959, 1010, 1055
NcoI CCATGG 1 cut(s) 682
NdeII GATC 4 cut(s) 67, 355, 447, 809
NheI GCTAGC 1 cut(s) 190
NlaIII CATG 6 cut(s) 169, 346, 589, 686, 865, 1025
NlaIV GGNNCC 1 cut(s) 867
NmuCI GTSAC 2 cut(s) 398, 802
NsiI ATGCAT 1 cut(s) 1027
NspI RCATGY 1 cut(s) 1025
PaeI GCATGC 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PdmI GAANNNNTTC 2 cut(s) 221, 1067
PfeI GAWTC 1 cut(s) 579
PfoI TCCNGGA 1 cut(s) 868
PkrI GCNGC 3 cut(s) 46, 922, 964
PleI GAGTC 2 cut(s) 405, 410
PpsI GAGTC 2 cut(s) 405, 410
Psp6I CCWGG 2 cut(s) 145, 868
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 2 cut(s) 145, 868
PspN4I GGNNCC 1 cut(s) 867
PspPI GGNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 3 cut(s) 55, 79, 1119
RsaNI GTAC 3 cut(s) 54, 78, 1118
RseI CAYNNNNRTG 2 cut(s) 621, 696
SaqAI TTAA 3 cut(s) 480, 831, 1147
SatI GCNGC 3 cut(s) 45, 921, 963
Sau3AI GATC 4 cut(s) 67, 355, 447, 809
Sau96I GGNCC 1 cut(s) 279
ScaI AGTACT 1 cut(s) 1119
SchI GAGTC 2 cut(s) 406, 410
ScrFI CCNGG 2 cut(s) 147, 870
SfaNI GCATC 4 cut(s) 140, 886, 907, 1106
Sfr274I CTCGAG 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 621, 696
SmlI CTYRAG 2 cut(s) 212, 1121
SmoI CTYRAG 2 cut(s) 212, 1121
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 1 cut(s) 546
SspI AATATT 1 cut(s) 478
SspMI CTAG 3 cut(s) 185, 191, 972
StyD4I CCNGG 2 cut(s) 145, 868
StyI CCWWGG 2 cut(s) 540, 682
TaaI ACNGT 2 cut(s) 371, 1036
TaiI ACGT 1 cut(s) 739
TaqI TCGA 2 cut(s) 213, 225
TasI AATT 1 cut(s) 546
TatI WGTACW 2 cut(s) 53, 1117
TfiI GAWTC 1 cut(s) 579
Tru1I TTAA 3 cut(s) 480, 831, 1147
Tru9I TTAA 3 cut(s) 480, 831, 1147
TscAI CASTG 4 cut(s) 281, 819, 831, 1060
TseFI GTSAC 2 cut(s) 398, 802
TseI GCWGC 3 cut(s) 44, 920, 962
Tsp45I GTSAC 2 cut(s) 398, 802
TspDTI ATGAA 3 cut(s) 196, 574, 734
TspRI CASTG 4 cut(s) 281, 819, 831, 1060
XceI RCATGY 1 cut(s) 1025
XhoI CTCGAG 1 cut(s) 212
XmnI GAANNNNTTC 2 cut(s) 221, 1067
XspI CTAG 3 cut(s) 185, 191, 972
ZrmI AGTACT 1 cut(s) 1119
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.