Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021719.1

Orthogroup ID

OG0006695

Physical Location & Seq

Genomic Coordinates Forward (+)

17136 .. 19120

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021719.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgggttgcttcagttcttccagttccaaatccaaatccaaatttaaatccaccaccaacacatctcagtatgatcaaaccgctgctcagcctctgcaataccaagaacctcccaacgtccagcaacaaatcctcctacaaatcccaggatgcagagttcacctcatggaagaaggagaagccctagagctcgccgtcggcgagttcattctcgagaacatcttcgacgagaatatatctctagccaccgttatcaaagtcggtgaagaactccaatggcccttaacgaaagacgagccggttgtgaagatagatgatttgcactacctcttctccttgccgatgagagatggtgatcctctgagctacggtgtgacctttccggagcagtatgcaagtcacttgggatttctggactcctttttgaaggagcattcgtgctttacgatcacttccaatagtagcgctacgaagaatgttaagggagttgattggaaggagtatgctccgaggattgatgactataataatgtgttggccaaggcaattgcaggaggaactggtcagattgtcagaggaatcttcatgtgtagcaatgcttatgctaatcagctccataaaggaggggaaacgacattggctcgtccagttgaggagaaaagatatgggaaacaagaaagtcatagcaaaaattctaatgccacaaacaagagtggaatgaacagaagcttgaaacgtgtgagaaggttgtcaaagatgacatcaaatttgagcaaatctatgcttgatggggttggtcttgtgaccggatcagtgatgaaacctgtggttaaatcccaagcagggaaggcattcctaaacatggttccaggacaagtcctcttggcttcacttgatgctatcaacaagattttagatgctgctgaagttgccgaaaaacaagccctttcggctacctctgctgcaacaactagaatggtcagcaacaggtatggggaaagtgcaggggaagcaactgagcacgcatttgcaacggcagggcattgtgccaacactgcttggaacatcttcaaaatacgaaaggccatcaatccagcatcatctgtcaaaacaggagtactcaatgctgcaaaaaataaaaacaaaagttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Senescence

Protein Analysis

384

Amino Acids

41.76

Weight (kDa)

8.98

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21600 AT3G21600 AT3G21600 AT4G15450 AT4G15450
fragaria_vesca	FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090 FvH4_1g06090
malus_domestica	MD02G1065400.v1.1 MD15G1196300.v1.1
prunus_persica	Prupe.7G220100_v2.0.a1
pyrus_communis	pycom02g05150
rosa_chinensis	RchiOBHm_Chr2g0091841
rosa_laevigata	RLG00000016256
rosa_multiflora	Rmu_sc0021719.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149690
rosa_samantha	Rh2AG066200 Rh2BG065600 Rh2CG067000 Rh2DG065300
rosa_wichuraiana	Rw2G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	350, 817
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	41, 691, 766
AcuI	CTGAAG	1 cut(s)	945
AfaI	GTAC	1 cut(s)	1119
AfeI	AGCGCT	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	843, 862
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	427, 733, 1072
AjnI	CCWGG	2 cut(s)	145, 868
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	4 cut(s)	190, 366, 613, 729
AluI	AGCT	4 cut(s)	190, 366, 613, 729
Alw21I	GWGCWC	2 cut(s)	192, 1023
AlwI	GGATC	2 cut(s)	350, 817
AlwNI	CAGNNNCTG	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	212
Aor13HI	TCCGGA	1 cut(s)	382
Aor51HI	AGCGCT	1 cut(s)	466
AoxI	GGCC	3 cut(s)	278, 537, 1083
ApeKI	GCWGC	4 cut(s)	83, 920, 962, 1127
ApoI	RAATTY	3 cut(s)	41, 691, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	751, 783
Asp700I	GAANNNNTTC	3 cut(s)	221, 851, 1067
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	152, 275, 365
AvaI	CYCGRG	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	192, 1023
BbvI	GCAGC	4 cut(s)	70, 907, 949, 1114
BccI	CCATC	3 cut(s)	344, 782, 1094
BceAI	ACGGC	2 cut(s)	179, 1050
BciT130I	CCWGG	2 cut(s)	147, 870
BclI	TGATCA	1 cut(s)	73
BfaI	CTAG	3 cut(s)	185, 242, 972
BfoI	RGCGCY	1 cut(s)	468
BglI	GCCNNNNNGGC	1 cut(s)	950
BisI	GCNGC	4 cut(s)	84, 921, 963, 1128
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	4 cut(s)	85, 922, 964, 1129
BmcAI	AGTACT	1 cut(s)	1119
Bme1390I	CCNGG	2 cut(s)	147, 870
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	2 cut(s)	147, 870
BmsI	GCATC	4 cut(s)	140, 886, 907, 1106
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	145, 509, 540
BsaWI	WCCGGW	2 cut(s)	382, 806
BsaXI	ACNNNNNCTCC	6 cut(s)	117, 147, 317, 347, 422, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	843, 862
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	3 cut(s)	21, 565, 647
Bse3DI	GCAATG	1 cut(s)	601
Bse8I	GATNNNNATC	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	147, 870
BseDI	CCNNGG	3 cut(s)	145, 509, 540
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	843, 862
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	4 cut(s)	80, 101, 353, 1008
BseNI	ACTGG	3 cut(s)	21, 565, 647
BseRI	GAGGAG	1 cut(s)	668
BseXI	GCAGC	4 cut(s)	70, 907, 949, 1114
BsgI	GTGCAG	1 cut(s)	1023
BshFI	GGCC	3 cut(s)	280, 539, 1085
BsiHKAI	GWGCWC	2 cut(s)	192, 1023
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	299, 383, 807
BslI	CCNNNNNNNGG	2 cut(s)	843, 862
BsmI	GAATGC	2 cut(s)	433, 851
BsnI	GGCC	3 cut(s)	280, 539, 1085
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	192, 1023
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	73, 355, 447, 809
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	280, 539, 1085
BspCNI	CTCAG	4 cut(s)	79, 100, 354, 1009
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	867
BspPI	GGATC	2 cut(s)	350, 817
BsrDI	GCAATG	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	3 cut(s)	21, 565, 647
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	145, 509, 540
BssMI	GATC	4 cut(s)	73, 355, 447, 809
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	147, 870
Bst4CI	ACNGT	2 cut(s)	250, 371
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	192, 1023
BstDEI	CTNAG	4 cut(s)	66, 87, 362, 1017
BstF5I	GGATG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	4 cut(s)	76, 358, 450, 812
BstMBI	GATC	4 cut(s)	73, 355, 447, 809
BstMWI	GCNNNNNNNGC	6 cut(s)	848, 929, 950, 959, 1010, 1055
BstNI	CCWGG	2 cut(s)	147, 870
BstSCI	CCNGG	2 cut(s)	145, 868
BstV1I	GCAGC	4 cut(s)	70, 907, 949, 1114
BsuRI	GGCC	3 cut(s)	280, 539, 1085
BtsCI	GGATG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	2 cut(s)	819, 1053
Cac8I	GCNNGC	2 cut(s)	192, 1023
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	1118
CviAII	CATG	3 cut(s)	166, 586, 862
CviQI	GTAC	1 cut(s)	1118
DdeI	CTNAG	4 cut(s)	66, 87, 362, 1017
DpnI	GATC	4 cut(s)	75, 357, 449, 811
DpnII	GATC	4 cut(s)	73, 355, 447, 809
DraI	TTTAAA	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	192
Eco47III	AGCGCT	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	945
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	145, 868
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	3 cut(s)	169, 589, 865
FatI	CATG	3 cut(s)	165, 585, 861
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	84, 921, 963, 1128
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	84, 921, 963, 1128
FspBI	CTAG	3 cut(s)	185, 242, 972
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	4 cut(s)	84, 921, 963, 1128
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	280, 539, 1085
HapII	CCGG	3 cut(s)	299, 383, 807
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	169, 589, 865
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	2 cut(s)	416, 579
HpaII	CCGG	3 cut(s)	299, 383, 807
HphI	GGTGA	3 cut(s)	152, 275, 365
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	363, 510, 567, 575
Hpy188III	TCNNGA	4 cut(s)	212, 214, 383, 413
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	200, 230
HpyAV	CCTTC	5 cut(s)	167, 421, 490, 738, 841
HpyCH4III	ACNGT	2 cut(s)	250, 371
HpyCH4IV	ACGT	2 cut(s)	117, 736
HpyCH4V	TGCA	9 cut(s)	97, 153, 322, 395, 551, 965, 1004, 1031, 1130
HpyF10VI	GCNNNNNNNGC	6 cut(s)	848, 929, 950, 959, 1010, 1055
HpyF3I	CTNAG	4 cut(s)	66, 87, 362, 1017
HpySE526I	ACGT	2 cut(s)	117, 736
Hsp92II	CATG	3 cut(s)	169, 589, 865
HspAI	GCGC	1 cut(s)	465
Kpn2I	TCCGGA	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	73, 355, 447, 809
LmnI	GCTCC	4 cut(s)	385, 430, 511, 618
Lsp1109I	GCAGC	4 cut(s)	70, 907, 949, 1114
LweI	GCATC	4 cut(s)	140, 886, 907, 1106
MaeI	CTAG	3 cut(s)	185, 242, 972
MaeII	ACGT	2 cut(s)	117, 736
MaeIII	GTNAC	3 cut(s)	373, 398, 802
MalI	GATC	4 cut(s)	75, 357, 449, 811
MboI	GATC	4 cut(s)	73, 355, 447, 809
MboII	GAAGA	9 cut(s)	9, 182, 214, 278, 319, 322, 484, 574, 1060
MfeI	CAATTG	1 cut(s)	546
MhlI	GDGCHC	2 cut(s)	192, 1023
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	4 cut(s)	41, 546, 691, 766
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	539
MroI	TCCGGA	1 cut(s)	382
MroXI	GAANNNNTTC	3 cut(s)	221, 851, 1067
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	5 cut(s)	45, 284, 480, 831, 1153
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	299, 383, 807
MspR9I	CCNGG	2 cut(s)	147, 870
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	2 cut(s)	433, 851
MvaI	CCWGG	2 cut(s)	147, 870
MwoI	GCNNNNNNNGC	6 cut(s)	848, 929, 950, 959, 1010, 1055
NdeII	GATC	4 cut(s)	73, 355, 447, 809
NlaIII	CATG	3 cut(s)	169, 589, 865
NlaIV	GGNNCC	1 cut(s)	867
NmuCI	GTSAC	3 cut(s)	373, 398, 802
PaeR7I	CTCGAG	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 443
PctI	GAATGC	2 cut(s)	433, 851
PdmI	GAANNNNTTC	3 cut(s)	221, 851, 1067
PfeI	GAWTC	1 cut(s)	579
PfoI	TCCNGGA	1 cut(s)	868
PkrI	GCNGC	4 cut(s)	85, 922, 964, 1129
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	145, 868
PspGI	CCWGG	2 cut(s)	145, 868
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	1119
RsaNI	GTAC	1 cut(s)	1118
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	45, 284, 480, 831, 1153
SatI	GCNGC	4 cut(s)	84, 921, 963, 1128
Sau3AI	GATC	4 cut(s)	73, 355, 447, 809
Sau96I	GGNCC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	1119
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	147, 870
SduI	GDGCHC	2 cut(s)	192, 1023
SfaNI	GCATC	4 cut(s)	140, 886, 907, 1106
Sfr274I	CTCGAG	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	212
SmiI	ATTTAAAT	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	41, 546, 691, 766
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	3 cut(s)	185, 242, 972
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	145, 868
StyI	CCWWGG	1 cut(s)	540
SwaI	ATTTAAAT	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	250, 371
TaiI	ACGT	2 cut(s)	120, 739
TaqI	TCGA	2 cut(s)	213, 225
TasI	AATT	4 cut(s)	41, 546, 691, 766
TatI	WGTACW	1 cut(s)	1117
TfiI	GAWTC	1 cut(s)	579
Tru1I	TTAA	5 cut(s)	45, 284, 480, 831, 1153
Tru9I	TTAA	5 cut(s)	45, 284, 480, 831, 1153
TscAI	CASTG	2 cut(s)	819, 1060
TseFI	GTSAC	3 cut(s)	373, 398, 802
TseI	GCWGC	4 cut(s)	83, 920, 962, 1127
Tsp45I	GTSAC	3 cut(s)	373, 398, 802
TspDTI	ATGAA	4 cut(s)	196, 574, 734, 833
TspRI	CASTG	2 cut(s)	819, 1060
XapI	RAATTY	3 cut(s)	41, 691, 766
XhoI	CTCGAG	1 cut(s)	212
XmnI	GAANNNNTTC	3 cut(s)	221, 851, 1067
XspI	CTAG	3 cut(s)	185, 242, 972
ZrmI	AGTACT	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.