Rw2G005450

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006695
Physical Location & Seq
Forward (+)
5145018 .. 5147651
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005450.1

Sequence Viewer

Length: 1161 bp
ATGGGTTGCTTCAGTTCTTCCAGTTCCAAATCCAAATCCAAATTTAAATCCACCACCAACACATCTCAGTATGATCAAACCGCTGCTCAGCCTCTGCAATACCAAGAACCTCCCAACAAAAACGTCCAGCAACAAATCCTCCTACAAATCCCAGGATGCAGAGTTCACCTCATGGAAGAAGGAGAAGCCCTAGAGCTCGCCGTCGGCGAGTTCATTCTCGAGAACATCTTCGACGAGAATATATCTCTAGCCACCGTTATCAAAGTCGGTGAAGAACTCCAATGGCCATTAACGAAAGACGAGCCGGTTGTGAAGATAGATGATTTGCACTACCTCTTCTCCTTGCCGATGAGAGATGGTGATCCTCTGAGCTACGGTGTGACCTTTCCGGAGCAGTATGCAAGTCACTTGGGATTTCTGGACTCCTTTTTGAAGGAGCATTCGTGCTTTACGATCACTTCCAATAGTAGCGCTACGAAGAATGTGAAGGGAGTTGATTGGAAGGAGTATGCTCCGAGGATTGATGACTATAATAATGTGTTGGCCAAGGCAATTGCAGGAGGAACTGGTCAGATTGTCAGAGGAATCTTCATGTGTAGCAATGCTTATGCTAATCAGCTCCATAAAGGAGGGGAAACGACATTGGCTCGTCCAGTTGAGGAGAAAAGATATGGGAAACAAGAAAGTCATAGCAAAAATTCTAATGCCACAAACAAGAGTGGAATGAACAGAAGCTTGAAACGTGTGAGAAGGTTGTCAAAAATGACATCAAATTTGAGCAAATCTATGCTTGATGGGGTTGGTCTTGTGACCGGATCAGTGATGAAACCTGTGGTTAAATCCCAAGCAGGGAAGGCATTCCTAAACATGGTTCCAGGACAAGTCCTCTTGGCTTCACTTGATGCTATCAACAAGATTTTAGATGCTGCTGAAGTTGCCGAAAAACAAGCCCTTTCGGCTACCTCTGCTGCAACAACTAGAATGGTCAGCAACAGGTATGGGGAAAGTGCAGGGGAAGCAACTGAGCACGCATTTGCAACGGCAGGGCATTGTGCCAACACTGCTTGGAACATCTTCAAAATACGAAAGGCCATCAATCCAGCATCATCTGTCAAAACAGGAGTACTCAATGCTGCAAAAAATAAAAACAAAAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence

Protein Analysis

386

Amino Acids

42.01

Weight (kDa)

9.06

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 183 - 364 6.3e-39 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 1 cut(s) 81
AclWI GGATC 2 cut(s) 356, 823
AcoI YGGCCR 2 cut(s) 284, 543
AcsI RAATTY 3 cut(s) 41, 697, 772
AcuI CTGAAG 1 cut(s) 951
AfaI GTAC 1 cut(s) 1125
AfeI AGCGCT 1 cut(s) 472
AfiI CCNNNNNNNGG 2 cut(s) 849, 868
AflIII ACRYGT 1 cut(s) 742
AgsI TTSAA 3 cut(s) 433, 739, 1078
AjnI CCWGG 2 cut(s) 151, 874
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 196, 372, 619, 735
AluI AGCT 4 cut(s) 196, 372, 619, 735
Alw21I GWGCWC 2 cut(s) 198, 1029
AlwI GGATC 2 cut(s) 356, 823
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 218
Aor13HI TCCGGA 1 cut(s) 388
Aor51HI AGCGCT 1 cut(s) 472
AoxI GGCC 3 cut(s) 284, 543, 1089
ApeKI GCWGC 4 cut(s) 83, 926, 968, 1133
ApoI RAATTY 3 cut(s) 41, 697, 772
ArsI GACNNNNNNTTYG 2 cut(s) 757, 789
Asp700I GAANNNNTTC 3 cut(s) 227, 857, 1073
AspLEI GCGC 1 cut(s) 473
AsuHPI GGTGA 3 cut(s) 158, 281, 371
AvaI CYCGRG 1 cut(s) 218
BalI TGGCCA 2 cut(s) 286, 545
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 198, 1029
BbvI GCAGC 4 cut(s) 70, 913, 955, 1120
BccI CCATC 3 cut(s) 350, 788, 1100
BceAI ACGGC 2 cut(s) 185, 1056
BciT130I CCWGG 2 cut(s) 153, 876
BclI TGATCA 1 cut(s) 73
BfaI CTAG 3 cut(s) 191, 248, 978
BfoI RGCGCY 1 cut(s) 474
BglI GCCNNNNNGGC 1 cut(s) 956
BisI GCNGC 4 cut(s) 84, 927, 969, 1134
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 4 cut(s) 85, 928, 970, 1135
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 2 cut(s) 153, 876
BmeT110I CYCGRG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 873
BmrFI CCNGG 2 cut(s) 153, 876
BmsI GCATC 4 cut(s) 146, 892, 913, 1112
BplI GAGNNNNNCTC 2 cut(s) 153, 185
Bpu1102I GCTNAGC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 151, 515, 546
BsaWI WCCGGW 2 cut(s) 388, 812
BsaXI ACNNNNNCTCC 6 cut(s) 123, 153, 323, 353, 428, 458
Bsc4I CCNNNNNNNGG 2 cut(s) 849, 868
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 3 cut(s) 21, 571, 653
Bse3DI GCAATG 1 cut(s) 607
Bse8I GATNNNNATC 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 2 cut(s) 153, 876
BseDI CCNNGG 3 cut(s) 151, 515, 546
BseGI GGATG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 849, 868
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 4 cut(s) 80, 101, 359, 1014
BseNI ACTGG 3 cut(s) 21, 571, 653
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 4 cut(s) 70, 913, 955, 1120
BsgI GTGCAG 1 cut(s) 1029
BshFI GGCC 3 cut(s) 286, 545, 1091
BsiHKAI GWGCWC 2 cut(s) 198, 1029
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 3 cut(s) 305, 389, 813
BslI CCNNNNNNNGG 2 cut(s) 849, 868
BsmI GAATGC 2 cut(s) 439, 857
BsnI GGCC 3 cut(s) 286, 545, 1091
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 198, 1029
Bsp13I TCCGGA 1 cut(s) 388
Bsp143I GATC 4 cut(s) 73, 361, 453, 815
Bsp1720I GCTNAGC 1 cut(s) 87
BspACI CCGC 1 cut(s) 81
BspANI GGCC 3 cut(s) 286, 545, 1091
BspCNI CTCAG 4 cut(s) 79, 100, 360, 1015
BspEI TCCGGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 873
BspPI GGATC 2 cut(s) 356, 823
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 3 cut(s) 21, 571, 653
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 151, 515, 546
BssMI GATC 4 cut(s) 73, 361, 453, 815
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 2 cut(s) 153, 876
Bst4CI ACNGT 2 cut(s) 256, 377
Bst6I CTCTTC 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 198, 1029
BstDEI CTNAG 4 cut(s) 66, 87, 368, 1023
BstF5I GGATG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 4 cut(s) 76, 364, 456, 818
BstMBI GATC 4 cut(s) 73, 361, 453, 815
BstMWI GCNNNNNNNGC 6 cut(s) 854, 935, 956, 965, 1016, 1061
BstNI CCWGG 2 cut(s) 153, 876
BstSCI CCNGG 2 cut(s) 151, 874
BstV1I GCAGC 4 cut(s) 70, 913, 955, 1120
BsuRI GGCC 3 cut(s) 286, 545, 1091
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 2 cut(s) 825, 1059
Cac8I GCNNGC 2 cut(s) 198, 1029
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 1 cut(s) 473
Cfr10I RCCGGY 1 cut(s) 304
Csp6I GTAC 1 cut(s) 1124
CviAII CATG 3 cut(s) 172, 592, 868
CviQI GTAC 1 cut(s) 1124
DdeI CTNAG 4 cut(s) 66, 87, 368, 1023
DpnI GATC 4 cut(s) 75, 363, 455, 817
DpnII GATC 4 cut(s) 73, 361, 453, 815
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 284, 543
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 472
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 951
Eco88I CYCGRG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 151, 874
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 3 cut(s) 175, 595, 871
FatI CATG 3 cut(s) 171, 591, 867
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 4 cut(s) 84, 927, 969, 1134
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 84, 927, 969, 1134
FspBI CTAG 3 cut(s) 191, 248, 978
GlaI GCGC 1 cut(s) 472
GluI GCNGC 4 cut(s) 84, 927, 969, 1134
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 3 cut(s) 286, 545, 1091
HapII CCGG 3 cut(s) 305, 389, 813
HhaI GCGC 1 cut(s) 473
Hin1II CATG 3 cut(s) 175, 595, 871
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 2 cut(s) 422, 585
HpaII CCGG 3 cut(s) 305, 389, 813
HphI GGTGA 3 cut(s) 158, 281, 371
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 4 cut(s) 369, 516, 573, 581
Hpy188III TCNNGA 4 cut(s) 218, 220, 389, 419
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 2 cut(s) 206, 236
HpyAV CCTTC 6 cut(s) 173, 427, 481, 496, 744, 847
HpyCH4III ACNGT 2 cut(s) 256, 377
HpyCH4IV ACGT 2 cut(s) 123, 742
HpyCH4V TGCA 9 cut(s) 97, 159, 328, 401, 557, 971, 1010, 1037, 1136
HpyF10VI GCNNNNNNNGC 6 cut(s) 854, 935, 956, 965, 1016, 1061
HpyF3I CTNAG 4 cut(s) 66, 87, 368, 1023
HpySE526I ACGT 2 cut(s) 123, 742
Hsp92II CATG 3 cut(s) 175, 595, 871
HspAI GCGC 1 cut(s) 471
Kpn2I TCCGGA 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 73, 361, 453, 815
LmnI GCTCC 4 cut(s) 391, 436, 517, 624
Lsp1109I GCAGC 4 cut(s) 70, 913, 955, 1120
LweI GCATC 4 cut(s) 146, 892, 913, 1112
MaeI CTAG 3 cut(s) 191, 248, 978
MaeII ACGT 2 cut(s) 123, 742
MaeIII GTNAC 3 cut(s) 379, 404, 808
MalI GATC 4 cut(s) 75, 363, 455, 817
MboI GATC 4 cut(s) 73, 361, 453, 815
MboII GAAGA 9 cut(s) 9, 188, 220, 284, 325, 328, 490, 580, 1066
MfeI CAATTG 1 cut(s) 552
MhlI GDGCHC 2 cut(s) 198, 1029
MlsI TGGCCA 2 cut(s) 286, 545
MluCI AATT 4 cut(s) 41, 552, 697, 772
MluNI TGGCCA 2 cut(s) 286, 545
MlyI GAGTC 1 cut(s) 416
Mox20I TGGCCA 2 cut(s) 286, 545
MroI TCCGGA 1 cut(s) 388
MroXI GAANNNNTTC 3 cut(s) 227, 857, 1073
MscI TGGCCA 2 cut(s) 286, 545
MseI TTAA 4 cut(s) 45, 290, 837, 1159
Msp20I TGGCCA 2 cut(s) 286, 545
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 3 cut(s) 305, 389, 813
MspR9I CCNGG 2 cut(s) 153, 876
MunI CAATTG 1 cut(s) 552
Mva1269I GAATGC 2 cut(s) 439, 857
MvaI CCWGG 2 cut(s) 153, 876
MwoI GCNNNNNNNGC 6 cut(s) 854, 935, 956, 965, 1016, 1061
NdeII GATC 4 cut(s) 73, 361, 453, 815
NlaIII CATG 3 cut(s) 175, 595, 871
NlaIV GGNNCC 1 cut(s) 873
NmuCI GTSAC 3 cut(s) 379, 404, 808
PaeR7I CTCGAG 1 cut(s) 218
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 449
PctI GAATGC 2 cut(s) 439, 857
PdmI GAANNNNTTC 3 cut(s) 227, 857, 1073
PfeI GAWTC 1 cut(s) 585
PfoI TCCNGGA 1 cut(s) 874
PkrI GCNGC 4 cut(s) 85, 928, 970, 1135
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 151, 874
PspGI CCWGG 2 cut(s) 151, 874
PspN4I GGNNCC 1 cut(s) 873
PstNI CAGNNNCTG 1 cut(s) 94
RsaI GTAC 1 cut(s) 1125
RsaNI GTAC 1 cut(s) 1124
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 4 cut(s) 45, 290, 837, 1159
SatI GCNGC 4 cut(s) 84, 927, 969, 1134
Sau3AI GATC 4 cut(s) 73, 361, 453, 815
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 153, 876
SduI GDGCHC 2 cut(s) 198, 1029
SfaNI GCATC 4 cut(s) 146, 892, 913, 1112
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmiI ATTTAAAT 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 4 cut(s) 41, 552, 697, 772
SsiI CCGC 1 cut(s) 81
SspMI CTAG 3 cut(s) 191, 248, 978
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 151, 874
StyI CCWWGG 1 cut(s) 546
SwaI ATTTAAAT 1 cut(s) 46
TaaI ACNGT 2 cut(s) 256, 377
TaiI ACGT 2 cut(s) 126, 745
TaqI TCGA 2 cut(s) 219, 231
TasI AATT 4 cut(s) 41, 552, 697, 772
TatI WGTACW 1 cut(s) 1123
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 4 cut(s) 45, 290, 837, 1159
Tru9I TTAA 4 cut(s) 45, 290, 837, 1159
TscAI CASTG 2 cut(s) 825, 1066
TseFI GTSAC 3 cut(s) 379, 404, 808
TseI GCWGC 4 cut(s) 83, 926, 968, 1133
Tsp45I GTSAC 3 cut(s) 379, 404, 808
TspDTI ATGAA 4 cut(s) 202, 580, 740, 839
TspRI CASTG 2 cut(s) 825, 1066
XapI RAATTY 3 cut(s) 41, 697, 772
XhoI CTCGAG 1 cut(s) 218
XmnI GAANNNNTTC 3 cut(s) 227, 857, 1073
XspI CTAG 3 cut(s) 191, 248, 978
ZrmI AGTACT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.