AT4G15450

Senescence dehydration-associated protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006695
Physical Location & Seq
Forward (+)
8839256 .. 8841575
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15450.2

Sequence Viewer

Length: 1146 bp
ATGAGTTTTTTCAGATCAAAGACTTCAAAAACTGAAACACAACAACCATCATCGTATGGACAACAACAAGACGCTATGTACTCATCTTACGGAACCGTGAGTGACGAAGTGTTATTACAGATTCATGGATGCAGAGCTCATCTCATCAACGGATCCGAAGCTGTGGAGCTAGCCGCCGGAGACTTCGAGCTTGTACAAGTCTTAGACAGCAACGTAGCCTTAGCTATGGTCGTGAGGATCGGAAATGACTTACAATGGCCGGTGATTAAAGACGAGCCAGTGGTGAAACTTGACTCTCGTGACTACCTCTTCACGTTGCCGGTTAAAGATGGAGAGCCACTTAGTTACGGCATCACGTTTTTCCCTATTGATGAAAATGACATCGTTTTTGTGAATAGTATCGAGTTGCTAGACGATTTCTTGAGAGAGAATTCTTGTTTCTCTTCGTCTCCGTCTTCTTCTTCGTCTTCTTCTTCGTCTTCTTCTTCGAGTGTTAACAATGGAATTGATTGGAAAGAGTTTGCGCCTAAGATTGAAGATTATAACAATGTTGTAGCTAAAGCTATTGCAGGAGGTACAGGGCATATCATTAGAGGGATGTTTAAATGCAGTAATGCTTACACTAATCAGGTTCATAAAGGAGGTGAAATTATGATTACGAAGGCTGAGAAAAAGAATGGTGCCTCGTCAAAAAGAAATGCAACCACAAACAAGAATCAAATCAACAAGAACCTTCAACGAGTAAGGAAATTGTCTAGGGCGACGGAGAAATTGAGCAAGACAATGTTGAATGGTGTGGGAGTGGTGAGTGGCTCGGTGATGGGTCCAGTTGTAAAGTCGAAGCCAGGGAAAGCTTTTTTCTCAATGGTTCCAGGGGAGGTTCTATTGGCTTCACTTGATGCTCTTAATAAATTACTAGACGCTGCTGAAGCCGCAGAGAGACAAACTCTTTCTGCTACGTCCAAAGCTACTACAAGAATGGTTAGTGAGAGGTTAGGTGAGAGCGCGGGAGAAGCTACGAAAGATGTACTAGGCACGGTTGGGCACGCAGCCGGCACTGCGTGGAACGTCTTCAATATCCGCAAAGCTTTCTCTCCTTCCTCTTCAGTCACATCGGGGATCCTCAAAAACGCTTCACGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence

Protein Analysis

381

Amino Acids

40.98

Weight (kDa)

8.76

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 187 - 356 4e-35 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 680
AccII CGCG 1 cut(s) 1007
AciI CCGC 4 cut(s) 174, 933, 1007, 1081
AclWI GGATC 5 cut(s) 147, 160, 245, 1114, 1127
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 2 cut(s) 948, 1089
AdeI CACNNNGTG 1 cut(s) 1062
AfaI GTAC 4 cut(s) 80, 195, 577, 1029
AgsI TTSAA 5 cut(s) 27, 536, 737, 790, 1075
AjnI CCWGG 2 cut(s) 844, 871
AleI CACNNNNGTG 1 cut(s) 1141
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 3 cut(s) 174, 453, 934
AlwI GGATC 5 cut(s) 147, 160, 245, 1114, 1127
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 923, 1049
ApoI RAATTY 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 1070
AspLEI GCGC 2 cut(s) 526, 1007
AspS9I GGNCC 1 cut(s) 824
AsuHPI GGTGA 6 cut(s) 274, 295, 656, 817, 829, 1010
AsuNHI GCTAGC 1 cut(s) 169
AvaII GGWCC 1 cut(s) 824
BaeGI GKGCMC 1 cut(s) 1047
BamHI GGATCC 2 cut(s) 152, 1119
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 99, 131
BauI CACGAG 1 cut(s) 297
BbsI GAAGAC 4 cut(s) 447, 459, 471, 1063
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 910, 1061
BccI CCATC 3 cut(s) 55, 323, 814
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 846, 873
BcoDI GTCTC 3 cut(s) 174, 453, 934
BfaI CTAG 5 cut(s) 170, 410, 756, 917, 1031
BisI GCNGC 4 cut(s) 174, 924, 933, 1050
BlsI GCNGC 4 cut(s) 175, 925, 934, 1051
Bme1390I CCNGG 2 cut(s) 846, 873
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 824
BmiI GGNNCC 6 cut(s) 94, 154, 682, 825, 870, 1121
BmrFI CCNGG 2 cut(s) 846, 873
BmsI GCATC 3 cut(s) 119, 360, 889
BmtI GCTAGC 1 cut(s) 173
BpiI GAAGAC 4 cut(s) 447, 459, 471, 1063
BplI GAGNNNNNCTC 4 cut(s) 126, 158, 931, 963
Bpu10I CCTNAGC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 845, 872
Bse118I RCCGGY 3 cut(s) 259, 319, 1052
Bse1I ACTGG 2 cut(s) 278, 827
BseBI CCWGG 2 cut(s) 846, 873
BseDI CCNNGG 2 cut(s) 845, 872
BseGI GGATG 2 cut(s) 134, 603
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 2 cut(s) 278, 827
BseSI GKGCMC 1 cut(s) 1047
BseXI GCAGC 2 cut(s) 910, 1061
Bsh1236I CGCG 1 cut(s) 1007
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 680
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 4 cut(s) 177, 260, 320, 1053
BsmAI GTCTC 3 cut(s) 174, 453, 934
BsmBI CGTCTC 1 cut(s) 453
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 139, 1047
Bsp1407I TGTACA 1 cut(s) 193
Bsp143I GATC 4 cut(s) 14, 152, 237, 1119
BspACI CCGC 4 cut(s) 174, 933, 1007, 1081
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 658
BspFNI CGCG 1 cut(s) 1007
BspLI GGNNCC 6 cut(s) 94, 154, 682, 825, 870, 1121
BspOI GCTAGC 1 cut(s) 173
BspPI GGATC 5 cut(s) 147, 160, 245, 1114, 1127
BspT107I GGYRCC 1 cut(s) 680
BsrFI RCCGGY 3 cut(s) 259, 319, 1052
BsrGI TGTACA 1 cut(s) 193
BsrI ACTGG 2 cut(s) 278, 827
BssAI RCCGGY 3 cut(s) 259, 319, 1052
BssECI CCNNGG 2 cut(s) 845, 872
BssMI GATC 4 cut(s) 14, 152, 237, 1119
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 846, 873
Bst4CI ACNGT 2 cut(s) 97, 1039
Bst6I CTCTTC 3 cut(s) 314, 448, 1108
BstAUI TGTACA 1 cut(s) 193
BstC8I GCNNGC 3 cut(s) 171, 1047, 1054
BstDEI CTNAG 5 cut(s) 202, 220, 341, 528, 666
BstF5I GGATG 2 cut(s) 134, 603
BstFNI CGCG 1 cut(s) 1007
BstHHI GCGC 2 cut(s) 526, 1007
BstKTI GATC 4 cut(s) 17, 155, 240, 1122
BstMAI GTCTC 3 cut(s) 174, 453, 934
BstMBI GATC 4 cut(s) 14, 152, 237, 1119
BstMWI GCNNNNNNNGC 4 cut(s) 929, 932, 1013, 1058
BstNI CCWGG 2 cut(s) 846, 873
BstSCI CCNGG 2 cut(s) 844, 871
BstSLI GKGCMC 1 cut(s) 1047
BstUI CGCG 1 cut(s) 1007
BstV1I GCAGC 2 cut(s) 910, 1061
BstV2I GAAGAC 4 cut(s) 447, 459, 471, 1063
BstX2I RGATCY 2 cut(s) 152, 1119
BstYI RGATCY 2 cut(s) 152, 1119
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 134, 603
BtsI GCAGTG 1 cut(s) 1056
BtsIMutI CAGTG 2 cut(s) 285, 1056
Cac8I GCNNGC 3 cut(s) 171, 1047, 1054
CfoI GCGC 2 cut(s) 526, 1007
Cfr10I RCCGGY 3 cut(s) 259, 319, 1052
Cfr13I GGNCC 1 cut(s) 824
CseI GACGC 2 cut(s) 80, 929
Csp6I GTAC 4 cut(s) 79, 194, 576, 1028
CviAII CATG 1 cut(s) 125
CviQI GTAC 4 cut(s) 79, 194, 576, 1028
DdeI CTNAG 5 cut(s) 202, 220, 341, 528, 666
DpnI GATC 4 cut(s) 16, 154, 239, 1121
DpnII GATC 4 cut(s) 14, 152, 237, 1119
DraI TTTAAA 1 cut(s) 604
DraIII CACNNNGTG 1 cut(s) 1062
EaeI YGGCCR 1 cut(s) 257
Eam1104I CTCTTC 3 cut(s) 314, 448, 1108
EarI CTCTTC 3 cut(s) 314, 448, 1108
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 948, 1089
EcoICRI GAGCTC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 844, 871
EcoT38I GRGCYC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 1 cut(s) 128
FaiI YATR 8 cut(s) 57, 77, 126, 227, 543, 585, 636, 653
FatI CATG 1 cut(s) 124
FauI CCCGC 1 cut(s) 1000
Fnu4HI GCNGC 4 cut(s) 174, 924, 933, 1050
FokI GGATG 2 cut(s) 141, 610
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 174, 924, 933, 1050
FspBI CTAG 5 cut(s) 170, 410, 756, 917, 1031
GlaI GCGC 2 cut(s) 525, 1006
GluI GCNGC 4 cut(s) 174, 924, 933, 1050
HaeIII GGCC 1 cut(s) 259
HapII CCGG 4 cut(s) 177, 260, 320, 1053
HgaI GACGC 2 cut(s) 80, 929
HhaI GCGC 2 cut(s) 526, 1007
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 2 cut(s) 524, 1005
HinP1I GCGC 2 cut(s) 524, 1005
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 2 cut(s) 852, 1086
HinfI GANTC 3 cut(s) 121, 293, 715
HpaI GTTAAC 1 cut(s) 496
HpaII CCGG 4 cut(s) 177, 260, 320, 1053
HphI GGTGA 6 cut(s) 274, 295, 656, 817, 829, 1010
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 3 cut(s) 14, 157, 242
Hpy188III TCNNGA 4 cut(s) 232, 299, 421, 1137
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 766
HpyAV CCTTC 3 cut(s) 655, 743, 1107
HpyCH4III ACNGT 2 cut(s) 97, 1039
HpyCH4IV ACGT 5 cut(s) 213, 314, 356, 959, 1068
HpyCH4V TGCA 4 cut(s) 132, 569, 609, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 929, 932, 1013, 1058
HpyF3I CTNAG 5 cut(s) 202, 220, 341, 528, 666
HpySE526I ACGT 5 cut(s) 213, 314, 356, 959, 1068
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 2 cut(s) 524, 1005
KroI GCCGGC 1 cut(s) 1052
KroNI GCCGGC 1 cut(s) 1054
KspAI GTTAAC 1 cut(s) 496
Kzo9I GATC 4 cut(s) 14, 152, 237, 1119
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 910, 1061
LweI GCATC 3 cut(s) 119, 360, 889
MaeI CTAG 5 cut(s) 170, 410, 756, 917, 1031
MaeII ACGT 5 cut(s) 213, 314, 356, 959, 1068
MaeIII GTNAC 4 cut(s) 101, 299, 344, 1108
MalI GATC 4 cut(s) 16, 154, 239, 1121
MboI GATC 4 cut(s) 14, 152, 237, 1119
MflI RGATCY 2 cut(s) 152, 1119
MhlI GDGCHC 2 cut(s) 139, 1047
MluCI AATT 6 cut(s) 430, 504, 648, 749, 770, 911
MlyI GAGTC 1 cut(s) 287
MroNI GCCGGC 1 cut(s) 1052
MroXI GAANNNNTTC 1 cut(s) 1070
MseI TTAA 5 cut(s) 267, 324, 495, 603, 906
MslI CAYNNNNRTG 1 cut(s) 1141
MspI CCGG 4 cut(s) 177, 260, 320, 1053
MspR9I CCNGG 2 cut(s) 846, 873
MvaI CCWGG 2 cut(s) 846, 873
MvnI CGCG 1 cut(s) 1007
MwoI GCNNNNNNNGC 4 cut(s) 929, 932, 1013, 1058
NaeI GCCGGC 1 cut(s) 1054
NdeII GATC 4 cut(s) 14, 152, 237, 1119
NgoMIV GCCGGC 1 cut(s) 1052
NheI GCTAGC 1 cut(s) 169
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 6 cut(s) 94, 154, 682, 825, 870, 1121
NmuCI GTSAC 3 cut(s) 101, 299, 1108
OliI CACNNNNGTG 1 cut(s) 1141
PdiI GCCGGC 1 cut(s) 1054
PdmI GAANNNNTTC 1 cut(s) 1070
PfeI GAWTC 2 cut(s) 121, 715
PkrI GCNGC 4 cut(s) 175, 925, 934, 1051
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PsiI TTATAA 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 844, 871
PspGI CCWGG 2 cut(s) 844, 871
PspN4I GGNNCC 6 cut(s) 94, 154, 682, 825, 870, 1121
PspPI GGNCC 1 cut(s) 824
PsuI RGATCY 2 cut(s) 152, 1119
RsaI GTAC 4 cut(s) 80, 195, 577, 1029
RsaNI GTAC 4 cut(s) 79, 194, 576, 1028
RseI CAYNNNNRTG 1 cut(s) 1141
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 5 cut(s) 267, 324, 495, 603, 906
SatI GCNGC 4 cut(s) 174, 924, 933, 1050
Sau3AI GATC 4 cut(s) 14, 152, 237, 1119
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 846, 873
SduI GDGCHC 2 cut(s) 139, 1047
SfaNI GCATC 3 cut(s) 119, 360, 889
SinI GGWCC 1 cut(s) 824
SmiMI CAYNNNNRTG 1 cut(s) 1141
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 6 cut(s) 430, 504, 648, 749, 770, 911
SsiI CCGC 4 cut(s) 174, 933, 1007, 1081
SspMI CTAG 5 cut(s) 170, 410, 756, 917, 1031
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 844, 871
TaaI ACNGT 2 cut(s) 97, 1039
TaiI ACGT 5 cut(s) 216, 317, 359, 962, 1071
TaqI TCGA 4 cut(s) 186, 402, 488, 839
TasI AATT 6 cut(s) 430, 504, 648, 749, 770, 911
TatI WGTACW 3 cut(s) 78, 193, 1027
TauI GCSGC 2 cut(s) 176, 935
TfiI GAWTC 2 cut(s) 121, 715
Tru1I TTAA 5 cut(s) 267, 324, 495, 603, 906
Tru9I TTAA 5 cut(s) 267, 324, 495, 603, 906
TscAI CASTG 2 cut(s) 285, 1063
TseFI GTSAC 3 cut(s) 101, 299, 1108
TseI GCWGC 2 cut(s) 923, 1049
Tsp45I GTSAC 3 cut(s) 101, 299, 1108
TspDTI ATGAA 3 cut(s) 113, 387, 623
TspGWI ACGGA 4 cut(s) 105, 165, 441, 779
TspRI CASTG 2 cut(s) 285, 1063
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 1070
XspI CTAG 5 cut(s) 170, 410, 756, 917, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.