Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007136

Physical Location & Seq

Genomic Coordinates Reverse (-)

7830905 .. 7834135

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22190.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGAGCTTCAGGGAGATGGATTAAAGCATTGGTTGGTTTTACTAAATCTGATAAGTCTAGGTCTTCCAAGAAAGATGAAAATGTGAAGGTTGCTACCAAGAGTAGGTTTGGGAGAAAGAATTCAGTTGATTTTGACTTTGAAAAGTTTCAAGATGGATTTGAAGATTCCAATACGCGTAGTATGGTTGATACTGGGGTCTCTACTTCAACTTCACTACAATCATATGGGGGTGTTGCTTATGACGAACAAAGTAGGGAAAATCGGGCTGCAACGCGTATCCAAACGGCTTATCGGGGATTTCTGGCTAGGAGGGCTTTACGAGCGTTGAAGGGATTGGTTAGACTTCAAGCCCTTGTTAGAGGACATGCTGTGAGAAAACAAGCTGCTGTAACGCTTCGATGCATGCAAGCGTTGGTAAGAGTTCAGGCTCGTGTACGCGCAAGACGTGTTCGTCTCGCCTTGGAATTGGAAAGTGAGACGAGTCAGCAGACACTTCAACAACAGTTAGCAGATGAAGCCCGAGTTCGAGAAATAGAGGAAGGTTGGTGCGATAGCATTGGATCTGTTGAACAAATTCAAGCCAAGCTGCTAAAGAGGCAGGAAGCTGCAGCTAAGCGTGAGAGAGCGATGGCATATGCTTTGACTCACCAGTGGCAGGCAGGAACTCGGCTGTTATCTGCTCACAGTGGCTTTCAACCTGACAAAAACAATTGGGGATGGAACTGGTTGGAAAGATGGATGGCAGTGCGTCCATGGGAGAACCGGTTTCTTGACAGTAACCTCAGGGATGATGCAAAATTAGGTGAAAACGGCATGGAGCAGTCTGAGAATGTACCTAAAACGCAGATCAAAAGTGTGAGTAAGATGCCAAACACTTCAAATCTTGTATCCGGTGTTTCAAGTCAGATGACTGGCCCGTGTCAGTCGGATGGTGATTCGTCTTCTCCTGGAATATCTTCAAGCATTCCAGTGGTATCCAAGGCTAAGTCAAAGCCAGCTAAAGACGATCTTGCTGTAGAAGTTAACTCAAGACCTGGTGCTGGTCCAAGATCACACAGCAATCCGAAAGAAAGATCAAGAGAACCAAATCGATCTTCAAAAGAACGATTATCTCTGCCAAACAGCGGAAAATCCTTAGGATCTCAGTCAACTAAAGCCAACCGAGCAGGAAAACTCACGCCAGCATCTCAAAAAGTAGTGGAGGAAAAATCTGCCCAAAACCAGAGAAGGCGCAACTCCGACCCAATAAAACAGAGGCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

422

Amino Acids

46.9

Weight (kDa)

10.35

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22190 AT3G22190 AT3G22190 AT3G22190
fragaria_vesca	FvH4_3g26200
malus_domestica	MD03G1158100.v1.1 MD11G1174600.v1.1
prunus_persica	Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1
pyrus_communis	pycom03g11120 pycom11g14930
rosa_chinensis	RchiOBHm_Chr5g0048991
rosa_laevigata	RLG00000034576
rosa_multiflora	Rmu_sc0004058.1_g000010
rosa_roxburghii	Rroxscaffold_1G00032910
rosa_rugosa	Rorug05G0241700
rosa_samantha	Rh5AG321900 Rh5BG332200 Rh5CG357400 Rh5DG344000
rosa_wichuraiana	Rw5G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	453
AccII	CGCG	3 cut(s)	178, 277, 441
AciI	CCGC	1 cut(s)	1128
AclWI	GGATC	2 cut(s)	571, 1150
AcsI	RAATTY	2 cut(s)	121, 576
AfaI	GTAC	2 cut(s)	438, 837
AfiI	CCNNNNNNNGG	4 cut(s)	105, 658, 1043, 1127
AflIII	ACRYGT	3 cut(s)	176, 275, 448
AgeI	ACCGGT	1 cut(s)	765
AjiI	CACGTC	1 cut(s)	449
AjnI	CCWGG	2 cut(s)	949, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	1081, 1113
AluBI	AGCT	6 cut(s)	8, 386, 589, 608, 614, 1001
AluI	AGCT	6 cut(s)	8, 386, 589, 608, 614, 1001
Alw26I	GTCTC	3 cut(s)	205, 461, 473
AlwI	GGATC	2 cut(s)	571, 1150
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	1 cut(s)	916
ApeKI	GCWGC	5 cut(s)	269, 386, 589, 608, 611
ApoI	RAATTY	2 cut(s)	121, 576
AsiGI	ACCGGT	1 cut(s)	765
Asp700I	GAANNNNTTC	4 cut(s)	121, 147, 576, 958
AspLEI	GCGC	2 cut(s)	443, 1236
AspS9I	GGNCC	2 cut(s)	917, 1046
AsuHPI	GGTGA	3 cut(s)	641, 818, 947
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	1046
AxyI	CCTNAGG	2 cut(s)	785, 1138
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	2 cut(s)	57, 936
BbvI	GCAGC	5 cut(s)	256, 373, 576, 595, 623
BccI	CCATC	7 cut(s)	12, 149, 625, 714, 732, 736, 926
BceAI	ACGGC	2 cut(s)	303, 829
BciT130I	CCWGG	2 cut(s)	951, 1038
BciVI	GTATCC	3 cut(s)	290, 901, 988
BcoDI	GTCTC	3 cut(s)	205, 461, 473
BfaI	CTAG	2 cut(s)	60, 309
BfmI	CTRYAG	2 cut(s)	609, 1017
BfuI	GTATCC	3 cut(s)	290, 901, 988
BisI	GCNGC	5 cut(s)	270, 387, 590, 609, 612
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	5 cut(s)	271, 388, 591, 610, 613
Bme1390I	CCNGG	2 cut(s)	951, 1038
Bme18I	GGWCC	1 cut(s)	1046
BmeT110I	CYCGRG	1 cut(s)	522
BmgBI	CACGTC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	917, 1046
BmrFI	CCNGG	2 cut(s)	951, 1038
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	4 cut(s)	392, 784, 858, 1196
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	2 cut(s)	57, 936
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	1015
Bsa29I	ATCGAT	1 cut(s)	1093
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	462, 755, 981
BsaWI	WCCGGW	2 cut(s)	765, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 658, 1043, 1127
Bse118I	RCCGGY	1 cut(s)	765
Bse1I	ACTGG	5 cut(s)	199, 652, 731, 919, 971
Bse21I	CCTNAGG	2 cut(s)	785, 1138
BseBI	CCWGG	2 cut(s)	951, 1038
BseCI	ATCGAT	1 cut(s)	1093
BseDI	CCNNGG	3 cut(s)	462, 755, 981
BseGI	GGATG	4 cut(s)	725, 747, 796, 937
BseLI	CCNNNNNNNGG	4 cut(s)	105, 658, 1043, 1127
BseMII	CTCAG	3 cut(s)	799, 819, 1160
BseNI	ACTGG	5 cut(s)	199, 652, 731, 919, 971
BseXI	GCAGC	5 cut(s)	256, 373, 576, 595, 623
Bsh1236I	CGCG	3 cut(s)	178, 277, 441
BshFI	GGCC	1 cut(s)	918
BshTI	ACCGGT	1 cut(s)	765
BshVI	ATCGAT	1 cut(s)	1093
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	766, 894
BslI	CCNNNNNNNGG	4 cut(s)	105, 658, 1043, 1127
BsmAI	GTCTC	3 cut(s)	205, 461, 473
BsmBI	CGTCTC	2 cut(s)	461, 473
BsmI	GAATGC	1 cut(s)	966
BsnI	GGCC	1 cut(s)	918
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	522
Bsp143I	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
Bsp1720I	GCTNAGC	1 cut(s)	615
Bsp19I	CCATGG	1 cut(s)	755
BspACI	CCGC	1 cut(s)	1128
BspANI	GGCC	1 cut(s)	918
BspCNI	CTCAG	3 cut(s)	798, 820, 1159
BspDI	ATCGAT	1 cut(s)	1093
BspFNI	CGCG	3 cut(s)	178, 277, 441
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	2 cut(s)	571, 1150
BspTNI	GGTCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	765
BsrI	ACTGG	5 cut(s)	199, 652, 731, 919, 971
BssAI	RCCGGY	1 cut(s)	765
BssECI	CCNNGG	3 cut(s)	462, 755, 981
BssMI	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	3 cut(s)	462, 755, 981
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	951, 1038
Bst4CI	ACNGT	3 cut(s)	507, 689, 779
BstC8I	GCNNGC	6 cut(s)	407, 411, 660, 999, 1185, 1263
BstDEI	CTNAG	6 cut(s)	615, 785, 828, 987, 1138, 1146
BstDSI	CCRYGG	1 cut(s)	755
BstF5I	GGATG	4 cut(s)	725, 747, 796, 937
BstFNI	CGCG	3 cut(s)	178, 277, 441
BstHHI	GCGC	2 cut(s)	443, 1236
BstKTI	GATC	7 cut(s)	566, 852, 1012, 1055, 1079, 1097, 1145
BstMAI	GTCTC	3 cut(s)	205, 461, 473
BstMBI	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 323, 518, 598, 1166
BstNI	CCWGG	2 cut(s)	951, 1038
BstNSI	RCATGY	2 cut(s)	371, 409
BstSCI	CCNGG	2 cut(s)	949, 1036
BstSFI	CTRYAG	2 cut(s)	609, 1017
BstUI	CGCG	3 cut(s)	178, 277, 441
BstV1I	GCAGC	5 cut(s)	256, 373, 576, 595, 623
BstV2I	GAAGAC	2 cut(s)	57, 936
BstX2I	RGATCY	2 cut(s)	563, 1142
BstYI	RGATCY	2 cut(s)	563, 1142
Bsu15I	ATCGAT	1 cut(s)	1093
Bsu36I	CCTNAGG	2 cut(s)	785, 1138
BsuI	GTATCC	3 cut(s)	290, 901, 988
BsuRI	GGCC	1 cut(s)	918
BsuTUI	ATCGAT	1 cut(s)	1093
BtgI	CCRYGG	1 cut(s)	755
BtgZI	GCGATG	1 cut(s)	644
BtrI	CACGTC	1 cut(s)	449
BtsCI	GGATG	4 cut(s)	725, 747, 796, 937
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	4 cut(s)	659, 694, 753, 978
Cac8I	GCNNGC	6 cut(s)	407, 411, 660, 999, 1185, 1263
CfoI	GCGC	2 cut(s)	443, 1236
Cfr10I	RCCGGY	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	917, 1046
ClaI	ATCGAT	1 cut(s)	1093
CseI	GACGC	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	1036
Csp6I	GTAC	2 cut(s)	437, 836
CspAI	ACCGGT	1 cut(s)	765
CviAII	CATG	4 cut(s)	368, 406, 756, 817
CviQI	GTAC	2 cut(s)	437, 836
DdeI	CTNAG	6 cut(s)	615, 785, 828, 987, 1138, 1146
DpnI	GATC	7 cut(s)	565, 851, 1011, 1054, 1078, 1096, 1144
DpnII	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
DrdI	GACNNNNNNGTC	1 cut(s)	453
DseDI	GACNNNNNNGTC	1 cut(s)	453
Eco130I	CCWWGG	3 cut(s)	462, 755, 981
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	1046
Eco81I	CCTNAGG	2 cut(s)	785, 1138
Eco88I	CYCGRG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	949, 1036
EcoT14I	CCWWGG	3 cut(s)	462, 755, 981
EcoT22I	ATGCAT	1 cut(s)	407
ErhI	CCWWGG	3 cut(s)	462, 755, 981
Esp3I	CGTCTC	2 cut(s)	461, 473
FaeI	CATG	4 cut(s)	371, 409, 759, 820
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FatI	CATG	4 cut(s)	367, 405, 755, 816
FauNDI	CATATG	2 cut(s)	226, 637
Fnu4HI	GCNGC	5 cut(s)	270, 387, 590, 609, 612
FokI	GGATG	4 cut(s)	732, 754, 803, 944
Fsp4HI	GCNGC	5 cut(s)	270, 387, 590, 609, 612
FspBI	CTAG	2 cut(s)	60, 309
GlaI	GCGC	2 cut(s)	442, 1235
GluI	GCNGC	5 cut(s)	270, 387, 590, 609, 612
HaeIII	GGCC	1 cut(s)	918
HapII	CCGG	2 cut(s)	766, 894
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	2 cut(s)	443, 1236
Hin1II	CATG	4 cut(s)	371, 409, 759, 820
Hin6I	GCGC	2 cut(s)	441, 1234
HinP1I	GCGC	2 cut(s)	441, 1234
HincII	GTYRAC	2 cut(s)	1027, 1152
HindII	GTYRAC	2 cut(s)	1027, 1152
HinfI	GANTC	4 cut(s)	167, 484, 646, 938
HpaI	GTTAAC	1 cut(s)	1027
HpaII	CCGG	2 cut(s)	766, 894
HphI	GGTGA	3 cut(s)	641, 818, 947
Hpy166II	GTNNAC	3 cut(s)	437, 1027, 1152
Hpy188I	TCNGA	6 cut(s)	52, 829, 909, 931, 1068, 1243
Hpy188III	TCNNGA	5 cut(s)	152, 530, 773, 1032, 1080
Hpy8I	GTNNAC	3 cut(s)	437, 1027, 1152
HpyAV	CCTTC	4 cut(s)	82, 325, 536, 1224
HpyCH4III	ACNGT	3 cut(s)	507, 689, 779
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	6 cut(s)	272, 405, 409, 611, 797, 1265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 323, 518, 598, 1166
HpyF3I	CTNAG	6 cut(s)	615, 785, 828, 987, 1138, 1146
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	4 cut(s)	371, 409, 759, 820
HspAI	GCGC	2 cut(s)	441, 1234
KspAI	GTTAAC	1 cut(s)	1027
Kzo9I	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
LmnI	GCTCC	2 cut(s)	5, 820
Lsp1109I	GCAGC	5 cut(s)	256, 373, 576, 595, 623
LweI	GCATC	4 cut(s)	392, 784, 858, 1196
MabI	ACCWGGT	1 cut(s)	1036
MaeI	CTAG	2 cut(s)	60, 309
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	391, 779
MalI	GATC	7 cut(s)	565, 851, 1011, 1054, 1078, 1096, 1144
MboI	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
MboII	GAAGA	5 cut(s)	57, 176, 936, 951, 1089
MfeI	CAATTG	1 cut(s)	712
MflI	RGATCY	2 cut(s)	563, 1142
MluCI	AATT	5 cut(s)	121, 467, 576, 712, 800
MluI	ACGCGT	2 cut(s)	176, 275
MlyI	GAGTC	2 cut(s)	493, 640
MmeI	TCCRAC	3 cut(s)	711, 909, 1266
MnlI	CCTC	7 cut(s)	306, 356, 532, 591, 794, 1198, 1251
Mph1103I	ATGCAT	1 cut(s)	407
MroXI	GAANNNNTTC	4 cut(s)	121, 147, 576, 958
MseI	TTAA	2 cut(s)	24, 1026
MslI	CAYNNNNRTG	1 cut(s)	971
MspA1I	CMGCKG	1 cut(s)	1128
MspI	CCGG	2 cut(s)	766, 894
MspR9I	CCNGG	2 cut(s)	951, 1038
MunI	CAATTG	1 cut(s)	712
Mva1269I	GAATGC	1 cut(s)	966
MvaI	CCWGG	2 cut(s)	951, 1038
MvnI	CGCG	3 cut(s)	178, 277, 441
MwoI	GCNNNNNNNGC	5 cut(s)	314, 323, 518, 598, 1166
NcoI	CCATGG	1 cut(s)	755
NdeI	CATATG	2 cut(s)	226, 637
NdeII	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
NlaIII	CATG	4 cut(s)	371, 409, 759, 820
NmeAIII	GCCGAG	1 cut(s)	649
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	2 cut(s)	371, 409
PaeI	GCATGC	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PctI	GAATGC	1 cut(s)	966
PdmI	GAANNNNTTC	4 cut(s)	121, 147, 576, 958
PfeI	GAWTC	2 cut(s)	167, 938
PfoI	TCCNGGA	1 cut(s)	949
PinAI	ACCGGT	1 cut(s)	765
PkrI	GCNGC	5 cut(s)	271, 388, 591, 610, 613
PleI	GAGTC	2 cut(s)	492, 640
PpsI	GAGTC	2 cut(s)	492, 640
Psp6I	CCWGG	2 cut(s)	949, 1036
PspGI	CCWGG	2 cut(s)	949, 1036
PspPI	GGNCC	2 cut(s)	917, 1046
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	563, 1142
RsaI	GTAC	2 cut(s)	438, 837
RsaNI	GTAC	2 cut(s)	437, 836
RseI	CAYNNNNRTG	1 cut(s)	971
SaqAI	TTAA	2 cut(s)	24, 1026
SatI	GCNGC	5 cut(s)	270, 387, 590, 609, 612
Sau3AI	GATC	7 cut(s)	563, 849, 1009, 1052, 1076, 1094, 1142
Sau96I	GGNCC	2 cut(s)	917, 1046
SchI	GAGTC	2 cut(s)	493, 640
ScrFI	CCNGG	2 cut(s)	951, 1038
SexAI	ACCWGGT	1 cut(s)	1036
SfaNI	GCATC	4 cut(s)	392, 784, 858, 1196
SfcI	CTRYAG	2 cut(s)	609, 1017
SinI	GGWCC	1 cut(s)	1046
SmiMI	CAYNNNNRTG	1 cut(s)	971
SmlI	CTYRAG	1 cut(s)	1030
SmoI	CTYRAG	1 cut(s)	1030
SphI	GCATGC	1 cut(s)	409
Sse9I	AATT	5 cut(s)	121, 467, 576, 712, 800
SsiI	CCGC	1 cut(s)	1128
SspMI	CTAG	2 cut(s)	60, 309
StyD4I	CCNGG	2 cut(s)	949, 1036
StyI	CCWWGG	3 cut(s)	462, 755, 981
TaaI	ACNGT	3 cut(s)	507, 689, 779
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	3 cut(s)	400, 529, 1093
TasI	AATT	5 cut(s)	121, 467, 576, 712, 800
TfiI	GAWTC	2 cut(s)	167, 938
Tru1I	TTAA	2 cut(s)	24, 1026
Tru9I	TTAA	2 cut(s)	24, 1026
TscAI	CASTG	4 cut(s)	659, 694, 753, 978
TseI	GCWGC	5 cut(s)	269, 386, 589, 608, 611
TspDTI	ATGAA	2 cut(s)	93, 531
TspRI	CASTG	4 cut(s)	659, 694, 753, 978
VpaK11BI	GGWCC	1 cut(s)	1046
XapI	RAATTY	2 cut(s)	121, 576
XceI	RCATGY	2 cut(s)	371, 409
XmnI	GAANNNNTTC	4 cut(s)	121, 147, 576, 958
XspI	CTAG	2 cut(s)	60, 309
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.