Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007136

Physical Location & Seq

Genomic Coordinates Reverse (-)

42137583 .. 42146218

Gene Structure 8636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG357400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGTGTCTCGGGTAAATGGATTAAGGCATTGGTTGGCTTGAAAAAATCAGAAAAGTCGCAATCTTCAGTGACAGATGACAATAGAACAACTGCTAACAGGTTTCGGCACAGGAGAAAGCATTCCGTTGAAATTGATTCACATAGACTGCAATATGAGTTTGATGCCAATGCTGCTCCACCAATTGGACATCCTCAATTAAACCCAGATGTTGTGGATTCTCCTTCTAGTTCACTCGAAGTACAGAATGCACAGAGTGAGCAGAATGTGAGAGAAGAGTGGGCGGCTACATGCATCCAAACAGCTTTTCGCGGCTTTCTGGCCAGAAGAGCGCTTCGAGCTTTAAAAGGATTAGTAAGACTTCAAGCCCTTGTCAGAGGCCATGCTGTGAGGAAGCAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTTAGAGTTCAGGCTCGTGTGAGAGCAAGGCGTGTTCGTCTGGCATTGGAAGGTGAAACGACAGAAGAGAGACTACAGCAACAAATTGTTAATGAGGCTCGTGTCCGAGAAATAGAAGAAGGATGGTGTGACAGTGTAGGATCTGTTCAAGAAATTCAGGCCAAGTTGTTGAAGAGGCAAGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCACTTGCTCATCAGTGGCAAGCTGGAACAAGGCAGCAACATGCTCCCTCTGGGTTTGAACCGGACAAAAACAGCTGGGGATGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCTTTCTAGATATTAATCTTAGAGATGGAGTAATGGTAGATGAGAATGAATCAACAGAGGCTAAGGATGGCAGCAGATCAGGGTTAAAATCTGCTGGCAAGAAACCTATTGCTTCAACTGTTCAATCGAATCTTTTAAGTCAAAAAGCTGTACCCTTTCATTCCGATGGGTGTGATTCTTCACCCAGCAAGTCGGCAGGTGTGCTGGAGGCATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCCTGTTTGGAAGATTCAATTGAAAGAGGAAACTTGAAACCTGATATTGCATCAAGATCCCATAGTAATCCAAAAGAGAGAACAACAGGATTGAATAAACAGGCGAAGAAGCAGTTGTCTCTGCCTAGCAATGGAGGTCTTAGTGGTCAAACTGCCAGACATCCGATTAGATCTAATGTCAAAGGGACACCCAGTTCTCAGAAGCCCGTCAAGGCAAGATCAAAACCCAGTGGGAAAGGGGACTCTTCAAAGTCAACCCCGCAAGCCGTTGATATGCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

434

Amino Acids

48.03

Weight (kDa)

10.08

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22190 AT3G22190 AT3G22190 AT3G22190
fragaria_vesca	FvH4_3g26200
malus_domestica	MD03G1158100.v1.1 MD11G1174600.v1.1
prunus_persica	Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1
pyrus_communis	pycom03g11120 pycom11g14930
rosa_chinensis	RchiOBHm_Chr5g0048991
rosa_laevigata	RLG00000034576
rosa_multiflora	Rmu_sc0004058.1_g000010
rosa_roxburghii	Rroxscaffold_1G00032910
rosa_rugosa	Rorug05G0241700
rosa_samantha	Rh5AG321900 Rh5BG332200 Rh5CG357400 Rh5DG344000
rosa_wichuraiana	Rw5G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	962
Acc36I	ACCTGC	1 cut(s)	962
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccII	CGCG	1 cut(s)	312
AciI	CCGC	4 cut(s)	284, 312, 775, 1280
AclWI	GGATC	2 cut(s)	580, 1071
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	585, 1012
AcuI	CTGAAG	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	2 cut(s)	243, 927
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	3 cut(s)	185, 766, 1151
AjnI	CCWGG	1 cut(s)	764
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AloI	GAACNNNNNNTCC	2 cut(s)	1198, 1230
AluBI	AGCT	8 cut(s)	305, 341, 401, 428, 623, 671, 723, 923
AluI	AGCT	8 cut(s)	305, 341, 401, 428, 623, 671, 723, 923
Alw26I	GTCTC	3 cut(s)	13, 496, 1143
AlwI	GGATC	2 cut(s)	580, 1071
Ama87I	CYCGRG	1 cut(s)	10
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	3 cut(s)	321, 379, 591
ApeKI	GCWGC	6 cut(s)	173, 401, 617, 620, 682, 846
ApoI	RAATTY	2 cut(s)	585, 1012
AseI	ATTAAT	1 cut(s)	789
Asp700I	GAANNNNTTC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	497, 948
AvaI	CYCGRG	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	323
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BauI	CACGAG	2 cut(s)	447, 531
BbvI	GCAGC	6 cut(s)	160, 388, 604, 632, 694, 858
BccI	CCATC	7 cut(s)	549, 723, 741, 745, 794, 836, 935
BceAI	ACGGC	1 cut(s)	1271
BciT130I	CCWGG	1 cut(s)	766
BcoDI	GTCTC	3 cut(s)	13, 496, 1143
BfaI	CTAG	3 cut(s)	228, 782, 1146
BfmI	CTRYAG	2 cut(s)	506, 618
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	962
BglII	AGATCT	1 cut(s)	1190
BisI	GCNGC	8 cut(s)	174, 285, 313, 402, 618, 621, 683, 847
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	8 cut(s)	175, 286, 314, 403, 619, 622, 684, 848
Bme1390I	CCNGG	1 cut(s)	766
BmeT110I	CYCGRG	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	766
BmrI	ACTGGG	2 cut(s)	1206, 1242
BmsI	GCATC	4 cut(s)	154, 303, 995, 1079
BmuI	ACTGGG	2 cut(s)	1206, 1242
BpmI	CTGGAG	1 cut(s)	1001
Bpu10I	CCTNAGC	1 cut(s)	837
Bpu1102I	GCTNAGC	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	639, 764, 765
BsaWI	WCCGGW	1 cut(s)	709
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 766, 1151
Bse1I	ACTGG	3 cut(s)	740, 1212, 1248
Bse3DI	GCAATG	1 cut(s)	1156
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	3 cut(s)	639, 764, 765
BseGI	GGATG	8 cut(s)	190, 294, 560, 734, 756, 847, 986, 1180
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	3 cut(s)	185, 766, 1151
BseMI	GCAATG	1 cut(s)	1156
BseMII	CTCAG	1 cut(s)	1232
BseNI	ACTGG	3 cut(s)	740, 1212, 1248
BseXI	GCAGC	6 cut(s)	160, 388, 604, 632, 694, 858
BseYI	CCCAGC	2 cut(s)	723, 959
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	323, 381, 593
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	3 cut(s)	747, 1219, 1274
BslI	CCNNNNNNNGG	3 cut(s)	185, 766, 1151
BsmAI	GTCTC	3 cut(s)	13, 496, 1143
BsmFI	GGGAC	3 cut(s)	747, 1219, 1274
BsmI	GAATGC	2 cut(s)	121, 253
BsnI	GGCC	3 cut(s)	323, 381, 593
BsoBI	CYCGRG	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
Bsp1720I	GCTNAGC	1 cut(s)	624
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	4 cut(s)	284, 312, 775, 1280
BspANI	GGCC	3 cut(s)	323, 381, 593
BspCNI	CTCAG	1 cut(s)	1231
BspFNI	CGCG	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	2 cut(s)	580, 1071
BspQI	GCTCTTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	1156
BsrI	ACTGG	3 cut(s)	740, 1212, 1248
BssECI	CCNNGG	3 cut(s)	639, 764, 765
BssMI	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
BssSI	CACGAG	2 cut(s)	447, 531
BssT1I	CCWWGG	1 cut(s)	639
Bst2BI	CACGAG	2 cut(s)	447, 531
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	2 cut(s)	566, 895
Bst6I	CTCTTC	6 cut(s)	270, 322, 417, 492, 599, 1270
BstC8I	GCNNGC	5 cut(s)	399, 426, 669, 871, 1284
BstDEI	CTNAG	5 cut(s)	624, 794, 837, 1160, 1218
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	8 cut(s)	190, 294, 560, 734, 756, 847, 986, 1180
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	5 cut(s)	575, 854, 1079, 1193, 1241
BstMAI	GTCTC	3 cut(s)	13, 496, 1143
BstMBI	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 329, 338
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	2 cut(s)	294, 692
BstSCI	CCNGG	1 cut(s)	764
BstSFI	CTRYAG	2 cut(s)	506, 618
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	160, 388, 604, 632, 694, 858
BstX2I	RGATCY	3 cut(s)	572, 1076, 1190
BstYI	RGATCY	3 cut(s)	572, 1076, 1190
BsuRI	GGCC	3 cut(s)	323, 381, 593
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	8 cut(s)	190, 294, 560, 734, 756, 847, 986, 1180
BtsIMutI	CAGTG	4 cut(s)	75, 571, 668, 1255
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	5 cut(s)	399, 426, 669, 871, 1284
CfoI	GCGC	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	242, 926
CviAII	CATG	4 cut(s)	291, 383, 640, 689
CviQI	GTAC	2 cut(s)	242, 926
DdeI	CTNAG	5 cut(s)	624, 794, 837, 1160, 1218
DpnI	GATC	5 cut(s)	574, 853, 1078, 1192, 1240
DpnII	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
DraI	TTTAAA	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	6 cut(s)	270, 322, 417, 492, 599, 1270
EarI	CTCTTC	6 cut(s)	270, 322, 417, 492, 599, 1270
Eco130I	CCWWGG	1 cut(s)	639
Eco47III	AGCGCT	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	639
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	4 cut(s)	294, 386, 643, 692
FaqI	GGGAC	3 cut(s)	747, 1219, 1274
FatI	CATG	4 cut(s)	290, 382, 639, 688
FauI	CCCGC	1 cut(s)	1287
FauNDI	CATATG	1 cut(s)	646
Fnu4HI	GCNGC	8 cut(s)	174, 285, 313, 402, 618, 621, 683, 847
FokI	GGATG	8 cut(s)	177, 281, 567, 741, 763, 854, 973, 1167
Fsp4HI	GCNGC	8 cut(s)	174, 285, 313, 402, 618, 621, 683, 847
FspBI	CTAG	3 cut(s)	228, 782, 1146
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	8 cut(s)	174, 285, 313, 402, 618, 621, 683, 847
GsaI	CCCAGC	2 cut(s)	727, 963
GsuI	CTGGAG	1 cut(s)	1001
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	323, 381, 593
HapII	CCGG	1 cut(s)	710
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	294, 386, 643, 692
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	1275
HindII	GTYRAC	1 cut(s)	1275
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	7 cut(s)	137, 218, 824, 904, 950, 1034, 1262
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	2 cut(s)	497, 948
Hpy166II	GTNNAC	2 cut(s)	233, 1275
Hpy188I	TCNGA	6 cut(s)	52, 377, 539, 940, 1185, 1221
Hpy188III	TCNNGA	3 cut(s)	581, 782, 1074
Hpy8I	GTNNAC	2 cut(s)	233, 1275
HpyAV	CCTTC	3 cut(s)	234, 476, 545
HpyCH4III	ACNGT	2 cut(s)	566, 895
HpyCH4V	TGCA	9 cut(s)	151, 251, 294, 404, 424, 620, 650, 1070, 1297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 329, 338
HpyF3I	CTNAG	5 cut(s)	624, 794, 837, 1160, 1218
Hsp92II	CATG	4 cut(s)	294, 386, 643, 692
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	181, 697
Lsp1109I	GCAGC	6 cut(s)	160, 388, 604, 632, 694, 858
LweI	GCATC	4 cut(s)	154, 303, 995, 1079
MaeI	CTAG	3 cut(s)	228, 782, 1146
MaeIII	GTNAC	2 cut(s)	70, 560
MalI	GATC	5 cut(s)	574, 853, 1078, 1192, 1240
MboI	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
MfeI	CAATTG	2 cut(s)	183, 1038
MflI	RGATCY	3 cut(s)	572, 1076, 1190
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	7 cut(s)	132, 183, 197, 516, 585, 1012, 1038
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	1256
MmeI	TCCRAC	1 cut(s)	1014
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	8 cut(s)	24, 200, 344, 522, 789, 860, 911, 1303
MslI	CAYNNNNRTG	1 cut(s)	939
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	723
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	766
MunI	CAATTG	2 cut(s)	183, 1038
Mva1269I	GAATGC	2 cut(s)	121, 253
MvaI	CCWGG	1 cut(s)	766
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	173, 329, 338
NcoI	CCATGG	1 cut(s)	639
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
NlaIII	CATG	4 cut(s)	294, 386, 643, 692
NmuCI	GTSAC	2 cut(s)	70, 560
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	2 cut(s)	294, 692
PaqCI	CACCTGC	1 cut(s)	962
PasI	CCCWGGG	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	322
PctI	GAATGC	2 cut(s)	121, 253
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	6 cut(s)	137, 218, 824, 904, 950, 1034
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	8 cut(s)	175, 286, 314, 403, 619, 622, 684, 848
PleI	GAGTC	1 cut(s)	1256
PpsI	GAGTC	1 cut(s)	1256
PshBI	ATTAAT	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	764
PspFI	CCCAGC	2 cut(s)	723, 959
PspGI	CCWGG	1 cut(s)	764
PsrI	GAACNNNNNNTAC	2 cut(s)	561, 593
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	3 cut(s)	572, 1076, 1190
PvuII	CAGCTG	1 cut(s)	723
RsaI	GTAC	2 cut(s)	243, 927
RsaNI	GTAC	2 cut(s)	242, 926
RseI	CAYNNNNRTG	1 cut(s)	939
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	8 cut(s)	24, 200, 344, 522, 789, 860, 911, 1303
SatI	GCNGC	8 cut(s)	174, 285, 313, 402, 618, 621, 683, 847
Sau3AI	GATC	5 cut(s)	572, 851, 1076, 1190, 1238
SchI	GAGTC	1 cut(s)	1256
ScrFI	CCNGG	1 cut(s)	766
SfaNI	GCATC	4 cut(s)	154, 303, 995, 1079
SfcI	CTRYAG	2 cut(s)	506, 618
SmiMI	CAYNNNNRTG	1 cut(s)	939
Sse9I	AATT	7 cut(s)	132, 183, 197, 516, 585, 1012, 1038
SsiI	CCGC	4 cut(s)	284, 312, 775, 1280
SspMI	CTAG	3 cut(s)	228, 782, 1146
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	566, 895
TaqI	TCGA	3 cut(s)	237, 337, 902
TasI	AATT	7 cut(s)	132, 183, 197, 516, 585, 1012, 1038
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	2 cut(s)	287, 315
TfiI	GAWTC	6 cut(s)	137, 218, 824, 904, 950, 1034
Tru1I	TTAA	8 cut(s)	24, 200, 344, 522, 789, 860, 911, 1303
Tru9I	TTAA	8 cut(s)	24, 200, 344, 522, 789, 860, 911, 1303
TscAI	CASTG	4 cut(s)	75, 571, 668, 1255
TseFI	GTSAC	2 cut(s)	70, 560
TseI	GCWGC	6 cut(s)	173, 401, 617, 620, 682, 846
Tsp45I	GTSAC	2 cut(s)	70, 560
TspDTI	ATGAA	2 cut(s)	837, 923
TspGWI	ACGGA	2 cut(s)	115, 749
TspRI	CASTG	4 cut(s)	75, 571, 668, 1255
Van91I	CCANNNNNTGG	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	789
XapI	RAATTY	2 cut(s)	585, 1012
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	2 cut(s)	294, 692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1024
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	3 cut(s)	228, 782, 1146
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.