MD11G1174600.v1.1

iq-domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
20468063 .. 20475872
7810 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1174600.v1.1.491

Sequence Viewer

Length: 1302 bp
ATGGGAGTGTCTGGAAAATGGATTAAGGCATTATTAAAGAAATCAGAAAAGTCTCAATCCTCTGAAAAAGATGACAATAAAACAGCTGGTTACAAGTTTCGGCACAGGAGGAAGAATTCCATTGAGTTTGACGCAAATAGACTTAAATGTGAGTTTGATGCAGATGTTGCTCCACCAGTTGGAGATGCCAGTACTCAATTAAACACGGATGCTTTGGATTCTTCTTCTGGTTCACTTCAAATACACAACGCACAAAGTGAGCAGAATGTGAGAGAAGAATGGGCTGCCACACGCATTCAAACTACCTTTCGTGGCTTTCTGGCTAGAAGAGCTCTTCGAGCTTTAAAAGGATTGGTGAGACTTCAAGCCCTTGTCAGAGGCCATGCTGTGAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTTAGAGTTCAGGCTCGAGTGCGAGCAAGGCATGTTCGCCTGGCATTAGAAGGTCAAATGGCTCAACAAAGACTTCAGCAACAACTTGCAAATGAGGTTCGGGTTCGAGAAATAGAAGAAGGGTGGTGTGACAGTGTAGGATCTGTTCAAGAAATTCAAGCCAAGTTGTTGAAGAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTTGCTCATCAGTGGCAAGCTGGATCAAGACAGCTGCCAGCTCCCTCGGGGTTCGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCCTTCTAGATATTAATCTCAGGGATGGAGTTATGGTACATGAGAATGAATCAGCTGAAGATAAGAACTGCAGTATAACCCAGTTAAAATCTGCTGGCAAGAATTCAAATATTCAATCAAATCTTTCAATTCAAAAAGCAGGTCCCCTTCACTCTGATGGCTGTGATTCTTCACCTAGTAAGTCAGCTGGAATGCTTGAGGCATCCAATACTACCCAACTTGGAAAGCAAAAGTCGAAGCCATATTTGGATGATGCAGCTGAACAAGGAAACTCCAAACCTGCTATTACTTCAAGATCCCATAGTAATCCAAAAGAGAGATCAACTGAGTCAGATAAACAGGCAAAGAAGCGGCTGTCTTTGCCTAATAGTGGGGGAAGTAATGGATCCCAAACTTCCAGACATCCTATAAGATCTAATATCAAAGGGACGCCCAGTTCTCAGAAGCCCATCAAGGCTAGATCCAAACCCAGTGGAAGAGGGGATTCAAACCCTACAAAATCAGTCTCGCAAGCCGTTGATGCATAA

Protein Analysis

434

Amino Acids

47.87

Weight (kDa)

10.07

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 905, 1063
AccB7I CCANNNNNTGG 1 cut(s) 179
AciI CCGC 2 cut(s) 775, 1126
AclWI GGATC 6 cut(s) 580, 682, 1065, 1155, 1168, 1230
AcsI RAATTY 3 cut(s) 115, 585, 877
AcuI CTGAAG 2 cut(s) 491, 852
AcyI GRCGYC 1 cut(s) 1205
AdeI CACNNNGTG 1 cut(s) 257
AfaI GTAC 2 cut(s) 193, 813
AfiI CCNNNNNNNGG 3 cut(s) 179, 766, 1145
AjnI CCWGG 2 cut(s) 471, 764
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AloI GAACNNNNNNTCC 2 cut(s) 1195, 1227
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 57, 352, 1285
AlwI GGATC 6 cut(s) 580, 682, 1065, 1155, 1168, 1230
Ama87I CYCGRG 2 cut(s) 447, 697
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 7 cut(s) 284, 401, 617, 620, 685, 720, 1031
ApoI RAATTY 3 cut(s) 115, 585, 877
ArsI GACNNNNNNTTYG 2 cut(s) 901, 933
AseI ATTAAT 1 cut(s) 789
AspS9I GGNCC 1 cut(s) 917
AsuHPI GGTGA 2 cut(s) 367, 939
AsuII TTCGAA 1 cut(s) 705
AvaI CYCGRG 2 cut(s) 447, 697
AvaII GGWCC 1 cut(s) 917
BamHI GGATCC 1 cut(s) 1160
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 7 cut(s) 271, 388, 604, 632, 672, 732, 1043
BccI CCATC 5 cut(s) 741, 745, 794, 926, 1232
BceAI ACGGC 1 cut(s) 1274
BciT130I CCWGG 2 cut(s) 473, 766
BcoDI GTCTC 3 cut(s) 57, 352, 1285
BfaI CTAG 4 cut(s) 324, 782, 951, 1233
BfmI CTRYAG 2 cut(s) 618, 844
BfuAI ACCTGC 2 cut(s) 905, 1063
BglII AGATCT 1 cut(s) 1187
BisI GCNGC 8 cut(s) 285, 402, 618, 621, 686, 721, 1032, 1127
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 8 cut(s) 286, 403, 619, 622, 687, 722, 1033, 1128
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 473, 766
Bme18I GGWCC 1 cut(s) 917
BmeT110I CYCGRG 2 cut(s) 447, 697
BmgT120I GGNCC 1 cut(s) 917
BmiI GGNNCC 2 cut(s) 919, 1162
BmrFI CCNGG 2 cut(s) 473, 766
BmrI ACTGGG 3 cut(s) 850, 1203, 1239
BmsI GCATC 6 cut(s) 148, 175, 199, 986, 1018, 1285
BmuI ACTGGG 3 cut(s) 850, 1203, 1239
Bpu1102I GCTNAGC 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 992
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 1205
BsaJI CCNNGG 4 cut(s) 639, 696, 764, 765
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 766, 1145
Bse1I ACTGG 6 cut(s) 176, 189, 740, 856, 1209, 1245
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 2 cut(s) 473, 766
BseDI CCNNGG 4 cut(s) 639, 696, 764, 765
BseGI GGATG 6 cut(s) 214, 756, 805, 977, 1030, 1177
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 179, 766, 1145
BseMII CTCAG 3 cut(s) 808, 1092, 1229
BseNI ACTGG 6 cut(s) 176, 189, 740, 856, 1209, 1245
BseXI GCAGC 7 cut(s) 271, 388, 604, 632, 672, 732, 1043
BseYI CCCAGC 1 cut(s) 723
BshFI GGCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 2 cut(s) 447, 697
BslFI GGGAC 3 cut(s) 747, 903, 1216
BslI CCNNNNNNNGG 3 cut(s) 179, 766, 1145
BsmAI GTCTC 3 cut(s) 57, 352, 1285
BsmFI GGGAC 3 cut(s) 747, 903, 1216
BsmI GAATGC 2 cut(s) 294, 972
BsnI GGCC 1 cut(s) 381
BsoBI CYCGRG 2 cut(s) 447, 697
Bsp119I TTCGAA 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
Bsp1720I GCTNAGC 1 cut(s) 624
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 2 cut(s) 775, 1126
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 3 cut(s) 807, 1093, 1228
BspLI GGNNCC 2 cut(s) 919, 1162
BspMAI CTGCAG 2 cut(s) 622, 848
BspMI ACCTGC 2 cut(s) 905, 1063
BspPI GGATC 6 cut(s) 580, 682, 1065, 1155, 1168, 1230
BspQI GCTCTTC 2 cut(s) 322, 339
BspT104I TTCGAA 1 cut(s) 705
BsrI ACTGG 6 cut(s) 176, 189, 740, 856, 1209, 1245
BssECI CCNNGG 4 cut(s) 639, 696, 764, 765
BssMI GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
BssNI GRCGYC 1 cut(s) 1205
BssT1I CCWWGG 1 cut(s) 639
Bst2UI CCWGG 2 cut(s) 473, 766
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 5 cut(s) 322, 339, 417, 599, 1246
BstACI GRCGYC 1 cut(s) 1205
BstAPI GCANNNNNTGC 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 6 cut(s) 426, 456, 669, 690, 871, 1287
BstDEI CTNAG 4 cut(s) 624, 794, 1101, 1215
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 6 cut(s) 214, 756, 805, 977, 1030, 1177
BstKTI GATC 7 cut(s) 575, 677, 1073, 1097, 1163, 1190, 1238
BstMAI GTCTC 3 cut(s) 57, 352, 1285
BstMBI GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
BstMWI GCNNNNNNNGC 6 cut(s) 167, 329, 338, 460, 1135, 1295
BstNI CCWGG 2 cut(s) 473, 766
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 471, 764
BstSFI CTRYAG 2 cut(s) 618, 844
BstV1I GCAGC 7 cut(s) 271, 388, 604, 632, 672, 732, 1043
BstX2I RGATCY 5 cut(s) 572, 1070, 1160, 1187, 1235
BstYI RGATCY 5 cut(s) 572, 1070, 1160, 1187, 1235
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 6 cut(s) 214, 756, 805, 977, 1030, 1177
BtsIMutI CAGTG 3 cut(s) 571, 668, 1252
BveI ACCTGC 2 cut(s) 905, 1063
Cac8I GCNNGC 6 cut(s) 426, 456, 669, 690, 871, 1287
Cfr13I GGNCC 1 cut(s) 917
CseI GACGC 2 cut(s) 140, 1213
Csp6I GTAC 2 cut(s) 192, 812
CspCI CAANNNNNGTGG 2 cut(s) 1228, 1263
CviAII CATG 4 cut(s) 383, 464, 640, 815
CviQI GTAC 2 cut(s) 192, 812
DdeI CTNAG 4 cut(s) 624, 794, 1101, 1215
DpnI GATC 7 cut(s) 574, 676, 1072, 1096, 1162, 1189, 1237
DpnII GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 257
Eam1104I CTCTTC 5 cut(s) 322, 339, 417, 599, 1246
EarI CTCTTC 5 cut(s) 322, 339, 417, 599, 1246
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 917
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 491, 852
Eco88I CYCGRG 2 cut(s) 447, 697
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 917
EcoRI GAATTC 2 cut(s) 115, 877
EcoRII CCWGG 2 cut(s) 471, 764
EcoT14I CCWWGG 1 cut(s) 639
EcoT22I ATGCAT 1 cut(s) 1300
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 4 cut(s) 386, 467, 643, 818
FaqI GGGAC 3 cut(s) 747, 903, 1216
FatI CATG 4 cut(s) 382, 463, 639, 814
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 8 cut(s) 285, 402, 618, 621, 686, 721, 1032, 1127
FokI GGATG 6 cut(s) 221, 763, 812, 964, 1037, 1164
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 8 cut(s) 285, 402, 618, 621, 686, 721, 1032, 1127
FspBI CTAG 4 cut(s) 324, 782, 951, 1233
GluI GCNGC 8 cut(s) 285, 402, 618, 621, 686, 721, 1032, 1127
GsaI CCCAGC 1 cut(s) 727
HaeIII GGCC 1 cut(s) 381
HgaI GACGC 2 cut(s) 140, 1213
Hin1I GRCGYC 1 cut(s) 1205
Hin1II CATG 4 cut(s) 386, 467, 643, 818
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 5 cut(s) 218, 824, 941, 1103, 1259
HphI GGTGA 2 cut(s) 367, 939
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 6 cut(s) 46, 64, 377, 931, 1108, 1218
Hpy188III TCNNGA 7 cut(s) 12, 539, 581, 678, 782, 1068, 1173
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 476, 545, 788, 932
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 8 cut(s) 161, 404, 424, 521, 620, 846, 1031, 1298
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 329, 338, 460, 1135, 1295
HpyF3I CTNAG 4 cut(s) 624, 794, 1101, 1215
Hsp92I GRCGYC 1 cut(s) 1205
Hsp92II CATG 4 cut(s) 386, 467, 643, 818
Kzo9I GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
LguI GCTCTTC 2 cut(s) 322, 339
LmnI GCTCC 2 cut(s) 175, 697
Lsp1109I GCAGC 7 cut(s) 271, 388, 604, 632, 672, 732, 1043
LweI GCATC 6 cut(s) 148, 175, 199, 986, 1018, 1285
MaeI CTAG 4 cut(s) 324, 782, 951, 1233
MaeIII GTNAC 2 cut(s) 89, 560
MalI GATC 7 cut(s) 574, 676, 1072, 1096, 1162, 1189, 1237
MboI GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
MflI RGATCY 5 cut(s) 572, 1070, 1160, 1187, 1235
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 5 cut(s) 115, 197, 585, 877, 903
MlyI GAGTC 1 cut(s) 1112
MmeI TCCRAC 2 cut(s) 160, 710
MnlI CCTC 9 cut(s) 70, 102, 371, 520, 600, 607, 706, 967, 1247
Mph1103I ATGCAT 1 cut(s) 1300
MseI TTAA 7 cut(s) 24, 35, 144, 200, 344, 789, 860
MslI CAYNNNNRTG 2 cut(s) 819, 930
MspA1I CMGCKG 6 cut(s) 86, 685, 723, 830, 962, 1034
MspR9I CCNGG 2 cut(s) 473, 766
Mva1269I GAATGC 2 cut(s) 294, 972
MvaI CCWGG 2 cut(s) 473, 766
MwoI GCNNNNNNNGC 6 cut(s) 167, 329, 338, 460, 1135, 1295
NcoI CCATGG 1 cut(s) 639
NdeI CATATG 1 cut(s) 646
NdeII GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
NlaIII CATG 4 cut(s) 386, 467, 643, 818
NlaIV GGNNCC 2 cut(s) 919, 1162
NmuCI GTSAC 1 cut(s) 560
NsiI ATGCAT 1 cut(s) 1300
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 1 cut(s) 705
PaeR7I CTCGAG 1 cut(s) 447
PasI CCCWGGG 1 cut(s) 765
PciSI GCTCTTC 2 cut(s) 322, 339
PctI GAATGC 2 cut(s) 294, 972
PfeI GAWTC 4 cut(s) 218, 824, 941, 1259
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 8 cut(s) 286, 403, 619, 622, 687, 722, 1033, 1128
PleI GAGTC 1 cut(s) 1111
PpsI GAGTC 1 cut(s) 1111
PpuMI RGGWCCY 1 cut(s) 917
PshBI ATTAAT 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 917
Psp6I CCWGG 2 cut(s) 471, 764
PspFI CCCAGC 1 cut(s) 723
PspGI CCWGG 2 cut(s) 471, 764
PspN4I GGNNCC 2 cut(s) 919, 1162
PspPI GGNCC 1 cut(s) 917
PspPPI RGGWCCY 1 cut(s) 917
PspXI VCTCGAGB 1 cut(s) 447
PsrI GAACNNNNNNTAC 2 cut(s) 561, 593
PstI CTGCAG 2 cut(s) 622, 848
PsuI RGATCY 5 cut(s) 572, 1070, 1160, 1187, 1235
PvuII CAGCTG 6 cut(s) 86, 685, 723, 830, 962, 1034
RsaI GTAC 2 cut(s) 193, 813
RsaNI GTAC 2 cut(s) 192, 812
RseI CAYNNNNRTG 2 cut(s) 819, 930
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 2 cut(s) 322, 339
SaqAI TTAA 7 cut(s) 24, 35, 144, 200, 344, 789, 860
SatI GCNGC 8 cut(s) 285, 402, 618, 621, 686, 721, 1032, 1127
Sau3AI GATC 7 cut(s) 572, 674, 1070, 1094, 1160, 1187, 1235
Sau96I GGNCC 1 cut(s) 917
ScaI AGTACT 1 cut(s) 193
SchI GAGTC 1 cut(s) 1112
ScrFI CCNGG 2 cut(s) 473, 766
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 6 cut(s) 148, 175, 199, 986, 1018, 1285
SfcI CTRYAG 2 cut(s) 618, 844
Sfr274I CTCGAG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 705
SinI GGWCC 1 cut(s) 917
SlaI CTCGAG 1 cut(s) 447
SmiMI CAYNNNNRTG 2 cut(s) 819, 930
SmlI CTYRAG 2 cut(s) 447, 971
SmoI CTYRAG 2 cut(s) 447, 971
Sse9I AATT 5 cut(s) 115, 197, 585, 877, 903
SsiI CCGC 2 cut(s) 775, 1126
SspI AATATT 1 cut(s) 886
SspMI CTAG 4 cut(s) 324, 782, 951, 1233
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 471, 764
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 5 cut(s) 337, 448, 538, 705, 1010
TasI AATT 5 cut(s) 115, 197, 585, 877, 903
TatI WGTACW 1 cut(s) 191
TauI GCSGC 1 cut(s) 1129
TfiI GAWTC 4 cut(s) 218, 824, 941, 1259
Tru1I TTAA 7 cut(s) 24, 35, 144, 200, 344, 789, 860
Tru9I TTAA 7 cut(s) 24, 35, 144, 200, 344, 789, 860
TscAI CASTG 3 cut(s) 571, 668, 1252
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 7 cut(s) 284, 401, 617, 620, 685, 720, 1031
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 1 cut(s) 837
TspGWI ACGGA 2 cut(s) 221, 749
TspRI CASTG 3 cut(s) 571, 668, 1252
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 917
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 3 cut(s) 115, 585, 877
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 447
XspI CTAG 4 cut(s) 324, 782, 951, 1233
ZrmI AGTACT 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.