Rh5DG344000

iq-domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
46958252 .. 46965379
7128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG344000.1

Sequence Viewer

Length: 1404 bp
ATGGGTGTCTCGGGTAAATGGATTAAGGCATTGGTTGGCTTGAAAAAATCAGAAAAGTCGCAGTCTTCAGTGGCAGATGACAATAGAACAACTGCTAACAGGTTTCGGCACAGGAGAAAGCATTCCGTTGAAATTGATTCAGATAGACTGCAATGCAAGTTTGATGCCAATGCTGCCCCACCAATTGGACATCCTCAATTAAACCCAGATGTTGTGGATTCTCCTTCTAGTTCACTCGAAGTACAGAATGCACAGAGTGAGCAGAATGTGAGAGAAGAGTGGGCGGCTACATGCATCCAAACAGCTTTTCGCGGCTTTCTGGCCAGAAGAGCGCTTCGGGCTTTAAAAGGATTAGTAAGACTTCAAGCCCTTGTCAGAGGCCATGCTGTGAGGAAGCAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTTAGAGTTCAGGCTCGTGTGAGAGCAAGGCGTGTTCGTCTGGCATTGGAAGGTGAAACAACAGAAGATAGACTACAGCAACAACTTGCTAATGAGGCTCATGTCCGAGAAATAGAAGAAGGATGGTGTGACAGTGTAGGATCTGTTCAAGAAATTCAGGCCAAGTTGTTGAAGCGGCAAGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCACTTGCTCATCAGTGGCAAGCTGGAACAAGACAGCAGCATGCTCCCTCTGGGTTTGAACCAGATAAAAACAGCTGGGGATGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCTTTCTAGATATTAATCTTAGAGATGGAGTAATGGTAGATGAGAATGAATCAACAGAGGCTAAGGATGGCAGCAGATCAGGGTTAAAATCTGCTGGCAAGAAACCTATTGCTTCAACTGTTCAATCGAATCTTGTAAGTCAAAAAGCTGTACCCTTTCATTCCAATGGGTGTGATTCTTCACCCAGCAAGTTGGCAGGTGTGCTAGAGGCATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCTGTACCCTTTCATTCTGATGGGTGTGATTCTTCACCCAGCAAGTCGGCAGGTGTGCTAGAGGGATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCCTGTTTGGAAGATTCAATTGAAAGAGGAAACTTGAAACCTGATATTGCATCAAGATCCCATAGTAATCCAAAAGAGAGAACAACAGGATTGAATAAACAGGCGAAGAAGCGGTTGTCTCTGCCTAGCAATGGAGGTCTTAGTGGTCAAACTGCCAGACATCCTATTAGATCTAATGTCAAAGGGACACCCAGTTCTCAGAAGCCCGTCAAGGCTAGATCAAAACCCAGTGGGAAAGGGGACTCTTCAAAGTCATCCCCGCAAGCCGTTGATATGCAACTTTAA

Protein Analysis

467

Amino Acids

51.19

Weight (kDa)

10.01

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 962, 1061
Acc36I ACCTGC 2 cut(s) 962, 1061
AccB7I CCANNNNNTGG 1 cut(s) 185
AccII CGCG 1 cut(s) 312
AciI CCGC 6 cut(s) 284, 312, 607, 775, 1231, 1379
AclWI GGATC 4 cut(s) 580, 1080, 1093, 1170
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 3 cut(s) 585, 1012, 1111
AcuI CTGAAG 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 257
AfaI GTAC 3 cut(s) 243, 927, 1026
AfeI AGCGCT 1 cut(s) 333
AfiI CCNNNNNNNGG 3 cut(s) 185, 766, 1250
AjnI CCWGG 1 cut(s) 764
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AloI GAACNNNNNNTCC 2 cut(s) 1297, 1329
AluBI AGCT 7 cut(s) 305, 401, 428, 623, 671, 723, 923
AluI AGCT 7 cut(s) 305, 401, 428, 623, 671, 723, 923
Alw26I GTCTC 2 cut(s) 13, 1242
AlwI GGATC 4 cut(s) 580, 1080, 1093, 1170
Ama87I CYCGRG 1 cut(s) 10
Aor51HI AGCGCT 1 cut(s) 333
AoxI GGCC 3 cut(s) 321, 379, 591
ApeKI GCWGC 6 cut(s) 173, 401, 617, 620, 685, 846
ApoI RAATTY 3 cut(s) 585, 1012, 1111
AseI ATTAAT 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 497, 948, 1047
AvaI CYCGRG 1 cut(s) 10
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 1085
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
BccI CCATC 7 cut(s) 549, 723, 741, 745, 794, 836, 1034
BceAI ACGGC 1 cut(s) 1370
BciT130I CCWGG 1 cut(s) 766
BcoDI GTCTC 2 cut(s) 13, 1242
BfaI CTAG 6 cut(s) 228, 782, 980, 1079, 1245, 1335
BfmI CTRYAG 2 cut(s) 506, 618
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 2 cut(s) 962, 1061
BglII AGATCT 1 cut(s) 1289
BisI GCNGC 9 cut(s) 174, 285, 313, 402, 608, 618, 621, 686, 847
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 9 cut(s) 175, 286, 314, 403, 609, 619, 622, 687, 848
Bme1390I CCNGG 1 cut(s) 766
BmeT110I CYCGRG 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 1087
BmrFI CCNGG 1 cut(s) 766
BmrI ACTGGG 2 cut(s) 1305, 1341
BmsI GCATC 4 cut(s) 154, 303, 995, 1178
BmuI ACTGGG 2 cut(s) 1305, 1341
BpiI GAAGAC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 837
Bpu1102I GCTNAGC 1 cut(s) 624
BsaBI GATNNNNATC 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 639, 764, 765
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 766, 1250
Bse1I ACTGG 3 cut(s) 740, 1311, 1347
Bse3DI GCAATG 2 cut(s) 158, 1255
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 1 cut(s) 766
BseDI CCNNGG 3 cut(s) 639, 764, 765
BseGI GGATG 9 cut(s) 190, 294, 560, 734, 756, 847, 986, 1279, 1373
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 185, 766, 1250
BseMI GCAATG 2 cut(s) 158, 1255
BseMII CTCAG 1 cut(s) 1331
BseNI ACTGG 3 cut(s) 740, 1311, 1347
BseXI GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
BseYI CCCAGC 3 cut(s) 723, 959, 1058
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 3 cut(s) 323, 381, 593
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 3 cut(s) 747, 1318, 1373
BslI CCNNNNNNNGG 3 cut(s) 185, 766, 1250
BsmAI GTCTC 2 cut(s) 13, 1242
BsmFI GGGAC 3 cut(s) 747, 1318, 1373
BsmI GAATGC 2 cut(s) 121, 253
BsnI GGCC 3 cut(s) 323, 381, 593
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
Bsp1720I GCTNAGC 1 cut(s) 624
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 6 cut(s) 284, 312, 607, 775, 1231, 1379
BspANI GGCC 3 cut(s) 323, 381, 593
BspCNI CTCAG 1 cut(s) 1330
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 1087
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 2 cut(s) 962, 1061
BspPI GGATC 4 cut(s) 580, 1080, 1093, 1170
BspQI GCTCTTC 1 cut(s) 322
BsrDI GCAATG 2 cut(s) 158, 1255
BsrI ACTGG 3 cut(s) 740, 1311, 1347
BssECI CCNNGG 3 cut(s) 639, 764, 765
BssMI GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 639
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 2 cut(s) 566, 895
Bst6I CTCTTC 4 cut(s) 270, 322, 417, 1369
BstC8I GCNNGC 6 cut(s) 399, 426, 669, 690, 871, 1383
BstDEI CTNAG 5 cut(s) 624, 794, 837, 1259, 1317
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 9 cut(s) 190, 294, 560, 734, 756, 847, 986, 1279, 1373
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 6 cut(s) 575, 854, 1088, 1178, 1292, 1340
BstMAI GTCTC 2 cut(s) 13, 1242
BstMBI GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
BstMWI GCNNNNNNNGC 4 cut(s) 173, 329, 338, 527
BstNI CCWGG 1 cut(s) 766
BstNSI RCATGY 2 cut(s) 294, 692
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 2 cut(s) 506, 618
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 4 cut(s) 572, 1085, 1175, 1289
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 4 cut(s) 572, 1085, 1175, 1289
BsuRI GGCC 3 cut(s) 323, 381, 593
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 9 cut(s) 190, 294, 560, 734, 756, 847, 986, 1279, 1373
BtsIMutI CAGTG 4 cut(s) 75, 571, 668, 1354
BveI ACCTGC 2 cut(s) 962, 1061
Cac8I GCNNGC 6 cut(s) 399, 426, 669, 690, 871, 1383
CfoI GCGC 1 cut(s) 334
Csp6I GTAC 3 cut(s) 242, 926, 1025
CviAII CATG 5 cut(s) 291, 383, 533, 640, 689
CviQI GTAC 3 cut(s) 242, 926, 1025
DdeI CTNAG 5 cut(s) 624, 794, 837, 1259, 1317
DpnI GATC 6 cut(s) 574, 853, 1087, 1177, 1291, 1339
DpnII GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 4 cut(s) 270, 322, 417, 1369
EarI CTCTTC 4 cut(s) 270, 322, 417, 1369
Eco130I CCWWGG 1 cut(s) 639
Eco47III AGCGCT 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 764
EcoT14I CCWWGG 1 cut(s) 639
EcoT22I ATGCAT 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 5 cut(s) 294, 386, 536, 643, 692
FaqI GGGAC 3 cut(s) 747, 1318, 1373
FatI CATG 5 cut(s) 290, 382, 532, 639, 688
FauI CCCGC 1 cut(s) 1386
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 9 cut(s) 174, 285, 313, 402, 608, 618, 621, 686, 847
FokI GGATG 9 cut(s) 177, 281, 567, 741, 763, 854, 973, 1266, 1360
Fsp4HI GCNGC 9 cut(s) 174, 285, 313, 402, 608, 618, 621, 686, 847
FspBI CTAG 6 cut(s) 228, 782, 980, 1079, 1245, 1335
GlaI GCGC 1 cut(s) 333
GluI GCNGC 9 cut(s) 174, 285, 313, 402, 608, 618, 621, 686, 847
GsaI CCCAGC 3 cut(s) 727, 963, 1062
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 3 cut(s) 323, 381, 593
HhaI GCGC 1 cut(s) 334
Hin1II CATG 5 cut(s) 294, 386, 536, 643, 692
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 8 cut(s) 137, 218, 824, 904, 950, 1049, 1133, 1361
HphI GGTGA 3 cut(s) 497, 948, 1047
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 6 cut(s) 52, 142, 377, 539, 1039, 1320
Hpy188III TCNNGA 3 cut(s) 581, 782, 1173
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 234, 476, 545
HpyCH4III ACNGT 2 cut(s) 566, 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 329, 338, 527
HpyF3I CTNAG 5 cut(s) 624, 794, 837, 1259, 1317
Hsp92II CATG 5 cut(s) 294, 386, 536, 643, 692
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
LweI GCATC 4 cut(s) 154, 303, 995, 1178
MaeI CTAG 6 cut(s) 228, 782, 980, 1079, 1245, 1335
MaeIII GTNAC 1 cut(s) 560
MalI GATC 6 cut(s) 574, 853, 1087, 1177, 1291, 1339
MboI GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
MfeI CAATTG 2 cut(s) 183, 1137
MflI RGATCY 4 cut(s) 572, 1085, 1175, 1289
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 7 cut(s) 132, 183, 197, 585, 1012, 1111, 1137
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 1355
MmeI TCCRAC 2 cut(s) 1014, 1113
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 323
MseI TTAA 6 cut(s) 24, 200, 344, 789, 860, 1402
MslI CAYNNNNRTG 2 cut(s) 939, 1038
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 723
MspR9I CCNGG 1 cut(s) 766
MunI CAATTG 2 cut(s) 183, 1137
Mva1269I GAATGC 2 cut(s) 121, 253
MvaI CCWGG 1 cut(s) 766
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 4 cut(s) 173, 329, 338, 527
NcoI CCATGG 1 cut(s) 639
NdeI CATATG 1 cut(s) 646
NdeII GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
NlaIII CATG 5 cut(s) 294, 386, 536, 643, 692
NlaIV GGNNCC 1 cut(s) 1087
NmuCI GTSAC 1 cut(s) 560
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 2 cut(s) 294, 692
PaeI GCATGC 1 cut(s) 692
PaqCI CACCTGC 2 cut(s) 962, 1061
PasI CCCWGGG 1 cut(s) 765
PciSI GCTCTTC 1 cut(s) 322
PctI GAATGC 2 cut(s) 121, 253
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 7 cut(s) 137, 218, 824, 904, 950, 1049, 1133
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 9 cut(s) 175, 286, 314, 403, 609, 619, 622, 687, 848
PleI GAGTC 1 cut(s) 1355
PpsI GAGTC 1 cut(s) 1355
PshBI ATTAAT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 764
PspFI CCCAGC 3 cut(s) 723, 959, 1058
PspGI CCWGG 1 cut(s) 764
PspN4I GGNNCC 1 cut(s) 1087
PsrI GAACNNNNNNTAC 2 cut(s) 561, 593
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 4 cut(s) 572, 1085, 1175, 1289
PvuII CAGCTG 1 cut(s) 723
RsaI GTAC 3 cut(s) 243, 927, 1026
RsaNI GTAC 3 cut(s) 242, 926, 1025
RseI CAYNNNNRTG 2 cut(s) 939, 1038
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 6 cut(s) 24, 200, 344, 789, 860, 1402
SatI GCNGC 9 cut(s) 174, 285, 313, 402, 608, 618, 621, 686, 847
Sau3AI GATC 6 cut(s) 572, 851, 1085, 1175, 1289, 1337
SchI GAGTC 1 cut(s) 1355
ScrFI CCNGG 1 cut(s) 766
SfaNI GCATC 4 cut(s) 154, 303, 995, 1178
SfcI CTRYAG 2 cut(s) 506, 618
SmiMI CAYNNNNRTG 2 cut(s) 939, 1038
SphI GCATGC 1 cut(s) 692
Sse9I AATT 7 cut(s) 132, 183, 197, 585, 1012, 1111, 1137
SsiI CCGC 6 cut(s) 284, 312, 607, 775, 1231, 1379
SspMI CTAG 6 cut(s) 228, 782, 980, 1079, 1245, 1335
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 2 cut(s) 566, 895
TaqI TCGA 2 cut(s) 237, 902
TasI AATT 7 cut(s) 132, 183, 197, 585, 1012, 1111, 1137
TatI WGTACW 1 cut(s) 241
TauI GCSGC 3 cut(s) 287, 315, 610
TfiI GAWTC 7 cut(s) 137, 218, 824, 904, 950, 1049, 1133
Tru1I TTAA 6 cut(s) 24, 200, 344, 789, 860, 1402
Tru9I TTAA 6 cut(s) 24, 200, 344, 789, 860, 1402
TscAI CASTG 4 cut(s) 75, 571, 668, 1354
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 6 cut(s) 173, 401, 617, 620, 685, 846
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 3 cut(s) 837, 923, 1022
TspGWI ACGGA 2 cut(s) 115, 749
TspRI CASTG 4 cut(s) 75, 571, 668, 1354
Van91I CCANNNNNTGG 1 cut(s) 185
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 3 cut(s) 585, 1012, 1111
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 2 cut(s) 294, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 1123
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 6 cut(s) 228, 782, 980, 1079, 1245, 1335
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.