MD03G1158100.v1.1

iq-domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
18790948 .. 18798441
7494 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1158100.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGGGAGTATCTGGAAAATGGATTAAGGCATTGTTAAAGAAATCAGAAAAGTCGCAATCTATTGAAAAAGATGACAATAAAATAGCTGGTTACAAGTTTCGGGACAGGAGAACGAATTCCATTGAGTTTGACACAAATAGACTTAAATGTGAGTTTGATGCAGATGTTGCTCCACCAGTTGGAGATGCCAGTACTCAATTAAACCCAGATGCTGTGGATTCTTCTTCTGCCTCACTTCAAATGCACAATGCAGAAAGTGAGCAGAATGTTAGGGAAGAATGGGCTGCCACACGCATTCAAACAGCCTTTCGTGGCTTTCTGGCTAGAAGAGCTCTTCGAGCTTTAAAAGGATTGGTGAGACTTCAAGCCCTTGTCAGAGGCCATGCTGTGAGAAAACAAGCGGCAATAACTCTTCGCTGTATGCAAGCTTTAGTTAGAGTTCAGGCTAGAGTGCGAGCAAGGCGCGTTCGCCTGGCATTGGAAGGTCAAACGGCTCAACAAAGGCTTCATGAACAACTTGCAAACGAGGCTCGTGTCCGAGAAATAGAAGAAGGGTGGTGTGACAGTGTAGGATCTGTTCAAGAAATTCAAGCCAAGTTGTTGAAGAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTCTTGCTCATCAGTGGCAAGCTGGATCAAGGCAGCTGCCAGTTCCATCTGGGTTTGAACCAGATAAAAGCAGCTGGGGATGGAACTGGTTAGAAAGATGGATGGCTGTCCGCCCCTGGGAGAACCGCTTTCTAGATATTAATCTTAGGGATGGAGTAATGGTACATGTGGATGAATCAGCTGATGATAAGAACAGCAGTATGCCCCAATTAAATTCTGCTGGCAAGAAACCTATTTCTTCAAATATTCAATCAAATATTTCAAGTCAAAAAGCCGGTCCGTGTCATTCTGATGGCTGTGATTCTTCACCTATTAAGTCGGCCGGAATGTTAGAGGCATCCAATACCCAATTTGAAAAGCAAAAGTCGAAGCCAAATTTGGATGGTGCAGCTGAAGAAAGAAACTCCAAACCTGCTATTACTTCAAGATCCCATAGTAATCCAAAAGAGAGAGCCACAGAATCAGACAAACGGGCAAAGAAGCGGCTGTCTCTGCCAAATAGCAGAGGAAGTAATGTCTCACAAACTTCCAGACATCCTATCAGATCTAATGTCAAAGGGACGCCGAGTTCTCAGAAACCCATCAAGGCTAGATCAAAACCCAGTGGAAGAGGGGATTCAAACCCTACAAAGTCAGTCTTGCAAACCATTGATGCGTAA

Protein Analysis

436

Amino Acids

48.36

Weight (kDa)

10.07

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1069
AccB7I CCANNNNNTGG 1 cut(s) 179
AccII CGCG 1 cut(s) 465
AciI CCGC 4 cut(s) 401, 760, 775, 1132
AclWI GGATC 3 cut(s) 580, 682, 1071
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 4 cut(s) 115, 585, 862, 1024
AcuI CTGAAG 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 1211
AfaI GTAC 2 cut(s) 193, 813
AfiI CCNNNNNNNGG 3 cut(s) 179, 478, 766
AflIII ACRYGT 1 cut(s) 814
AjnI CCWGG 2 cut(s) 471, 764
AjuI GAANNNNNNNTTGG 2 cut(s) 1010, 1042
AloI GAACNNNNNNTCC 2 cut(s) 1201, 1233
AluBI AGCT 9 cut(s) 86, 332, 341, 428, 671, 685, 723, 830, 1040
AluI AGCT 9 cut(s) 86, 332, 341, 428, 671, 685, 723, 830, 1040
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 352, 1143, 1171
AlwI GGATC 3 cut(s) 580, 682, 1071
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 2 cut(s) 379, 969
ApeKI GCWGC 7 cut(s) 284, 617, 620, 682, 685, 720, 1037
ApoI RAATTY 4 cut(s) 115, 585, 862, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 910, 942
AseI ATTAAT 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 115
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 926
AsuHPI GGTGA 2 cut(s) 367, 948
AvaII GGWCC 1 cut(s) 926
BanII GRGCYC 1 cut(s) 334
BauI CACGAG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 7 cut(s) 271, 604, 607, 672, 694, 732, 1049
BccI CCATC 8 cut(s) 703, 723, 741, 745, 794, 935, 1025, 1238
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 473, 766
BcoDI GTCTC 3 cut(s) 352, 1143, 1171
BfaI CTAG 4 cut(s) 324, 447, 782, 1239
BfuAI ACCTGC 1 cut(s) 1069
BglII AGATCT 1 cut(s) 1193
BisI GCNGC 9 cut(s) 285, 402, 618, 621, 683, 686, 721, 1038, 1133
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 9 cut(s) 286, 403, 619, 622, 684, 687, 722, 1039, 1134
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 473, 766
Bme18I GGWCC 1 cut(s) 926
BmgT120I GGNCC 1 cut(s) 926
BmrFI CCNGG 2 cut(s) 473, 766
BmrI ACTGGG 1 cut(s) 1245
BmsI GCATC 5 cut(s) 148, 175, 199, 995, 1291
BmuI ACTGGG 1 cut(s) 1245
Bpu1102I GCTNAGC 1 cut(s) 624
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 1211
BsaJI CCNNGG 3 cut(s) 639, 764, 765
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 478, 766
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 5 cut(s) 176, 189, 689, 740, 1251
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 2 cut(s) 473, 766
BseDI CCNNGG 3 cut(s) 639, 764, 765
BseGI GGATG 7 cut(s) 734, 756, 805, 826, 986, 1036, 1183
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 179, 478, 766
BseMII CTCAG 1 cut(s) 1235
BseNI ACTGG 5 cut(s) 176, 189, 689, 740, 1251
BseX3I CGGCCG 1 cut(s) 969
BseXI GCAGC 7 cut(s) 271, 604, 607, 672, 694, 732, 1049
BseYI CCCAGC 1 cut(s) 723
BsgI GTGCAG 1 cut(s) 1056
Bsh1236I CGCG 1 cut(s) 465
Bsh1285I CGRYCG 1 cut(s) 972
BshFI GGCC 2 cut(s) 381, 971
BsiEI CGRYCG 1 cut(s) 972
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 924, 972
BslFI GGGAC 2 cut(s) 116, 1222
BslI CCNNNNNNNGG 3 cut(s) 179, 478, 766
BsmAI GTCTC 3 cut(s) 352, 1143, 1171
BsmFI GGGAC 2 cut(s) 116, 1222
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 2 cut(s) 381, 971
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 5 cut(s) 572, 674, 1076, 1193, 1241
Bsp1720I GCTNAGC 1 cut(s) 624
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 4 cut(s) 401, 760, 775, 1132
BspANI GGCC 2 cut(s) 381, 971
BspCNI CTCAG 1 cut(s) 1234
BspFNI CGCG 1 cut(s) 465
BspHI TCATGA 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 1069
BspPI GGATC 3 cut(s) 580, 682, 1071
BspQI GCTCTTC 2 cut(s) 322, 339
BsrFI RCCGGY 1 cut(s) 923
BsrI ACTGG 5 cut(s) 176, 189, 689, 740, 1251
BssAI RCCGGY 1 cut(s) 923
BssECI CCNNGG 3 cut(s) 639, 764, 765
BssMI GATC 5 cut(s) 572, 674, 1076, 1193, 1241
BssNI GRCGYC 1 cut(s) 1211
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 639
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 473, 766
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 5 cut(s) 322, 339, 417, 599, 1252
BstACI GRCGYC 1 cut(s) 1211
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 4 cut(s) 426, 456, 669, 871
BstDEI CTNAG 3 cut(s) 624, 794, 1221
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 7 cut(s) 734, 756, 805, 826, 986, 1036, 1183
BstFNI CGCG 1 cut(s) 465
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 5 cut(s) 575, 677, 1079, 1196, 1244
BstMAI GTCTC 3 cut(s) 352, 1143, 1171
BstMBI GATC 5 cut(s) 572, 674, 1076, 1193, 1241
BstMCI CGRYCG 1 cut(s) 972
BstMWI GCNNNNNNNGC 6 cut(s) 167, 329, 338, 460, 527, 1141
BstNI CCWGG 2 cut(s) 473, 766
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 2 cut(s) 471, 764
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 7 cut(s) 271, 604, 607, 672, 694, 732, 1049
BstX2I RGATCY 3 cut(s) 572, 1076, 1193
BstYI RGATCY 3 cut(s) 572, 1076, 1193
BstZI CGGCCG 1 cut(s) 969
BsuRI GGCC 2 cut(s) 381, 971
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 7 cut(s) 734, 756, 805, 826, 986, 1036, 1183
BtsIMutI CAGTG 3 cut(s) 571, 668, 1258
BveI ACCTGC 1 cut(s) 1069
Cac8I GCNNGC 4 cut(s) 426, 456, 669, 871
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 1 cut(s) 926
CpoI CGGWCCG 1 cut(s) 926
CseI GACGC 1 cut(s) 1219
Csp6I GTAC 2 cut(s) 192, 812
CspI CGGWCCG 1 cut(s) 926
CviAII CATG 4 cut(s) 383, 509, 640, 815
CviQI GTAC 2 cut(s) 192, 812
DdeI CTNAG 3 cut(s) 624, 794, 1221
DpnI GATC 5 cut(s) 574, 676, 1078, 1195, 1243
DpnII GATC 5 cut(s) 572, 674, 1076, 1193, 1241
DraI TTTAAA 1 cut(s) 345
EaeI YGGCCR 1 cut(s) 969
EagI CGGCCG 1 cut(s) 969
Eam1104I CTCTTC 5 cut(s) 322, 339, 417, 599, 1252
EarI CTCTTC 5 cut(s) 322, 339, 417, 599, 1252
EciI GGCGGA 1 cut(s) 749
Ecl136II GAGCTC 1 cut(s) 332
EclXI CGGCCG 1 cut(s) 969
Eco130I CCWWGG 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 926
Eco52I CGGCCG 1 cut(s) 969
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 1062
EcoICRI GAGCTC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 471, 764
EcoT14I CCWWGG 1 cut(s) 639
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 4 cut(s) 386, 512, 643, 818
FaiI YATR 9 cut(s) 384, 422, 510, 641, 646, 648, 816, 851, 1083
FalI AAGNNNNNCTT 2 cut(s) 1271, 1303
FaqI GGGAC 2 cut(s) 116, 1222
FatI CATG 4 cut(s) 382, 508, 639, 814
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 9 cut(s) 285, 402, 618, 621, 683, 686, 721, 1038, 1133
FokI GGATG 7 cut(s) 741, 763, 812, 833, 973, 1043, 1170
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 9 cut(s) 285, 402, 618, 621, 683, 686, 721, 1038, 1133
FspBI CTAG 4 cut(s) 324, 447, 782, 1239
GlaI GCGC 1 cut(s) 464
GluI GCNGC 9 cut(s) 285, 402, 618, 621, 683, 686, 721, 1038, 1133
GsaI CCCAGC 1 cut(s) 727
HaeIII GGCC 2 cut(s) 381, 971
HapII CCGG 2 cut(s) 924, 972
HgaI GACGC 1 cut(s) 1219
HhaI GCGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 1211
Hin1II CATG 4 cut(s) 386, 512, 643, 818
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 5 cut(s) 218, 824, 950, 1109, 1265
HpaII CCGG 2 cut(s) 924, 972
HphI GGTGA 2 cut(s) 367, 948
Hpy188I TCNGA 7 cut(s) 46, 377, 539, 940, 1114, 1193, 1224
Hpy188III TCNNGA 7 cut(s) 12, 101, 509, 581, 782, 1074, 1179
HpyAV CCTTC 2 cut(s) 476, 545
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 7 cut(s) 161, 244, 251, 424, 521, 1037, 1291
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 329, 338, 460, 527, 1141
HpyF3I CTNAG 3 cut(s) 624, 794, 1221
Hsp92I GRCGYC 1 cut(s) 1211
Hsp92II CATG 4 cut(s) 386, 512, 643, 818
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 5 cut(s) 572, 674, 1076, 1193, 1241
LguI GCTCTTC 2 cut(s) 322, 339
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 7 cut(s) 271, 604, 607, 672, 694, 732, 1049
LweI GCATC 5 cut(s) 148, 175, 199, 995, 1291
MaeI CTAG 4 cut(s) 324, 447, 782, 1239
MaeIII GTNAC 2 cut(s) 89, 560
MalI GATC 5 cut(s) 574, 676, 1078, 1195, 1243
MboI GATC 5 cut(s) 572, 674, 1076, 1193, 1241
MflI RGATCY 3 cut(s) 572, 1076, 1193
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 7 cut(s) 115, 197, 585, 857, 862, 998, 1024
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 8 cut(s) 241, 371, 520, 600, 607, 976, 1148, 1253
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 8 cut(s) 24, 35, 144, 200, 344, 789, 860, 963
MslI CAYNNNNRTG 2 cut(s) 819, 939
MspA1I CMGCKG 4 cut(s) 685, 723, 830, 1040
MspI CCGG 2 cut(s) 924, 972
MspR9I CCNGG 2 cut(s) 473, 766
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 2 cut(s) 473, 766
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 6 cut(s) 167, 329, 338, 460, 527, 1141
NcoI CCATGG 1 cut(s) 639
NdeI CATATG 1 cut(s) 646
NdeII GATC 5 cut(s) 572, 674, 1076, 1193, 1241
NlaIII CATG 4 cut(s) 386, 512, 643, 818
NmeAIII GCCGAG 1 cut(s) 1239
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 1 cut(s) 818
PagI TCATGA 1 cut(s) 508
PasI CCCWGGG 1 cut(s) 765
PciI ACATGT 1 cut(s) 814
PciSI GCTCTTC 2 cut(s) 322, 339
PctI GAATGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 5 cut(s) 218, 824, 950, 1109, 1265
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 9 cut(s) 286, 403, 619, 622, 684, 687, 722, 1039, 1134
PscI ACATGT 1 cut(s) 814
PshBI ATTAAT 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 471, 764
PspFI CCCAGC 1 cut(s) 723
PspGI CCWGG 2 cut(s) 471, 764
PspPI GGNCC 1 cut(s) 926
PsrI GAACNNNNNNTAC 2 cut(s) 561, 593
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 3 cut(s) 572, 1076, 1193
PvuII CAGCTG 4 cut(s) 685, 723, 830, 1040
RsaI GTAC 2 cut(s) 193, 813
RsaNI GTAC 2 cut(s) 192, 812
RseI CAYNNNNRTG 2 cut(s) 819, 939
Rsr2I CGGWCCG 1 cut(s) 926
RsrII CGGWCCG 1 cut(s) 926
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 2 cut(s) 322, 339
SaqAI TTAA 8 cut(s) 24, 35, 144, 200, 344, 789, 860, 963
SatI GCNGC 9 cut(s) 285, 402, 618, 621, 683, 686, 721, 1038, 1133
Sau3AI GATC 5 cut(s) 572, 674, 1076, 1193, 1241
Sau96I GGNCC 1 cut(s) 926
ScaI AGTACT 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 473, 766
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 5 cut(s) 148, 175, 199, 995, 1291
SinI GGWCC 1 cut(s) 926
SmiMI CAYNNNNRTG 2 cut(s) 819, 939
Sse9I AATT 7 cut(s) 115, 197, 585, 857, 862, 998, 1024
SsiI CCGC 4 cut(s) 401, 760, 775, 1132
SspI AATATT 2 cut(s) 895, 907
SspMI CTAG 4 cut(s) 324, 447, 782, 1239
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 471, 764
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 2 cut(s) 337, 1016
TasI AATT 7 cut(s) 115, 197, 585, 857, 862, 998, 1024
TatI WGTACW 1 cut(s) 191
TauI GCSGC 2 cut(s) 404, 1135
TfiI GAWTC 5 cut(s) 218, 824, 950, 1109, 1265
Tru1I TTAA 8 cut(s) 24, 35, 144, 200, 344, 789, 860, 963
Tru9I TTAA 8 cut(s) 24, 35, 144, 200, 344, 789, 860, 963
TscAI CASTG 3 cut(s) 571, 668, 1258
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 7 cut(s) 284, 617, 620, 682, 685, 720, 1037
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 3 cut(s) 497, 525, 837
TspGWI ACGGA 1 cut(s) 918
TspRI CASTG 3 cut(s) 571, 668, 1258
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 926
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 4 cut(s) 115, 585, 862, 1024
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 4 cut(s) 324, 447, 782, 1239
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.