Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007136

Physical Location & Seq

Genomic Coordinates Reverse (-)

46192339 .. 46201646

Gene Structure 9308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG332200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGTGTCTCGGGTAAATGGATTAAGGCATTGGTTGGCTTGAAAAAATCAGAAAAGTCGCAGTCTTCAGTGGCAGATGACAATAGAACAACTGCTAACAGGTTTCGGCACAGGAGAAAGCATTCCGTTGAAATTGATTCAGATAGACTGCAATGCAAGTTTGATGCCAATGCTGCCCCACCAATTGGACATCCTCAATTAAACCCAGATGTTGTGGATTCTCCTTCTAGTTCACTCGAAGTACAGAATGCACAGAGTGAGCAGAATGTGAGAGAAGAGTGGGCGGCTACATGCATCCAAACAGCTTTTCGCGGCTTTCTGGCCAGAAGAGCGCTTCGGGCTTTAAAAGGATTAGTAAGACTTCAAGCCCTTGTCAGAGGCCATGCTGTGAGGAAGCAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTTAGAGTTCAGGCTCGTGTGAGAGCAAGGCGTGTTCGTCTGGCATTGGAAGGTGAAACAACAGAAGATAGACTACAGCAACAACTTGCTAATGAGGCTCATGTCCGAGAAATAGAAGAAGGATGGTGTGACAGTGTAGGATCTGTTCAAGAAATTCAGGCCAAGTTGTTGAAGCGGCAAGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCACTTGCTCATCAGTGGCAAGCTGGAACAAGACAGCAGCATGCTCCCTCTGGGTTTGAACCAGATAAAAACAGCTGGGGATGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCTTTCTAGATATTAATCTTAGAGATGGAGTAATGGTAGATGAGAATGAATCAACAGAGGCTAAGGATGGCAGCAGATCAGGGTTAAAATCTGCTGGCAAGAAACCTATTGCTTCAACTGTTCAATCGAATCTTGTAAGTCAAAAAGCTGTACCCTTTCATTCCAATGGGTGTGATTCTTCACCCAGCAAGTTGGCAGGTGTGCTAGAGGCATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCTGTACCCTTTCATTCTGATGGGTGTGATTCTTCACCCAGCAAGTCGGCAGGTGTGCTAGAGGGATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCCTGTTTGGAAGATTCAATTGAAAGAGGAAACTTGAAACCTGATATTGCATCAAGATCCCATAGTAATCCAAAAGAGAGAACAACAGGATTGAATAAACAGGCGAAGAAGCGGTTGTCTCTGCCTAGCAATGGTGAGTCCCCATCTTTCTGTGTGTGTGTGTGTGTTTCTTTCATATGTGCCCTAAGTTTCCTTACTGATAAAGGGAGTAGCAGTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

447

Amino Acids

49.22

Weight (kDa)

9.56

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22190 AT3G22190 AT3G22190 AT3G22190
fragaria_vesca	FvH4_3g26200
malus_domestica	MD03G1158100.v1.1 MD11G1174600.v1.1
prunus_persica	Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1
pyrus_communis	pycom03g11120 pycom11g14930
rosa_chinensis	RchiOBHm_Chr5g0048991
rosa_laevigata	RLG00000034576
rosa_multiflora	Rmu_sc0004058.1_g000010
rosa_roxburghii	Rroxscaffold_1G00032910
rosa_rugosa	Rorug05G0241700
rosa_samantha	Rh5AG321900 Rh5BG332200 Rh5CG357400 Rh5DG344000
rosa_wichuraiana	Rw5G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	962, 1061
Acc36I	ACCTGC	2 cut(s)	962, 1061
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccII	CGCG	1 cut(s)	312
AciI	CCGC	5 cut(s)	284, 312, 607, 775, 1231
AclWI	GGATC	4 cut(s)	580, 1080, 1093, 1170
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	3 cut(s)	585, 1012, 1111
AcuI	CTGAAG	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	3 cut(s)	243, 927, 1026
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	3 cut(s)	185, 766, 1250
AjnI	CCWGG	1 cut(s)	764
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	7 cut(s)	305, 401, 428, 623, 671, 723, 923
AluI	AGCT	7 cut(s)	305, 401, 428, 623, 671, 723, 923
Alw26I	GTCTC	2 cut(s)	13, 1242
AlwI	GGATC	4 cut(s)	580, 1080, 1093, 1170
Ama87I	CYCGRG	1 cut(s)	10
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	3 cut(s)	321, 379, 591
ApeKI	GCWGC	6 cut(s)	173, 401, 617, 620, 685, 846
ApoI	RAATTY	3 cut(s)	585, 1012, 1111
AseI	ATTAAT	1 cut(s)	789
Asp700I	GAANNNNTTC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	334
AsuHPI	GGTGA	4 cut(s)	497, 948, 1047, 1265
AvaI	CYCGRG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	1303
BalI	TGGCCA	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	1085
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	6 cut(s)	160, 388, 604, 632, 697, 858
BccI	CCATC	8 cut(s)	549, 723, 741, 745, 794, 836, 1034, 1270
BciT130I	CCWGG	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	13, 1242
BfaI	CTAG	5 cut(s)	228, 782, 980, 1079, 1245
BfmI	CTRYAG	2 cut(s)	506, 618
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	2 cut(s)	962, 1061
BisI	GCNGC	9 cut(s)	174, 285, 313, 402, 608, 618, 621, 686, 847
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	9 cut(s)	175, 286, 314, 403, 609, 619, 622, 687, 848
Bme1390I	CCNGG	1 cut(s)	766
BmeT110I	CYCGRG	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	1087
BmrFI	CCNGG	1 cut(s)	766
BmsI	GCATC	4 cut(s)	154, 303, 995, 1178
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	837
Bpu1102I	GCTNAGC	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	639, 764, 765
BsaXI	ACNNNNNCTCC	3 cut(s)	795, 825, 1318
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 766, 1250
Bse1I	ACTGG	1 cut(s)	740
Bse3DI	GCAATG	2 cut(s)	158, 1255
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	3 cut(s)	639, 764, 765
BseGI	GGATG	7 cut(s)	190, 294, 560, 734, 756, 847, 986
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	3 cut(s)	185, 766, 1250
BseMI	GCAATG	2 cut(s)	158, 1255
BseNI	ACTGG	1 cut(s)	740
BseSI	GKGCMC	1 cut(s)	1303
BseXI	GCAGC	6 cut(s)	160, 388, 604, 632, 697, 858
BseYI	CCCAGC	3 cut(s)	723, 959, 1058
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	323, 381, 593
BsiHKCI	CYCGRG	1 cut(s)	10
BslFI	GGGAC	2 cut(s)	747, 1243
BslI	CCNNNNNNNGG	3 cut(s)	185, 766, 1250
BsmAI	GTCTC	2 cut(s)	13, 1242
BsmFI	GGGAC	2 cut(s)	747, 1243
BsmI	GAATGC	2 cut(s)	121, 253
BsnI	GGCC	3 cut(s)	323, 381, 593
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	1303
Bsp143I	GATC	4 cut(s)	572, 851, 1085, 1175
Bsp1720I	GCTNAGC	1 cut(s)	624
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	5 cut(s)	284, 312, 607, 775, 1231
BspANI	GGCC	3 cut(s)	323, 381, 593
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	1087
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	2 cut(s)	962, 1061
BspPI	GGATC	4 cut(s)	580, 1080, 1093, 1170
BspQI	GCTCTTC	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	158, 1255
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	3 cut(s)	639, 764, 765
BssMI	GATC	4 cut(s)	572, 851, 1085, 1175
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	2 cut(s)	566, 895
Bst6I	CTCTTC	3 cut(s)	270, 322, 417
BstC8I	GCNNGC	5 cut(s)	399, 426, 669, 690, 871
BstDEI	CTNAG	4 cut(s)	624, 794, 837, 1304
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	7 cut(s)	190, 294, 560, 734, 756, 847, 986
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	4 cut(s)	575, 854, 1088, 1178
BstMAI	GTCTC	2 cut(s)	13, 1242
BstMBI	GATC	4 cut(s)	572, 851, 1085, 1175
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 329, 338, 527
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	2 cut(s)	294, 692
BstSCI	CCNGG	1 cut(s)	764
BstSFI	CTRYAG	2 cut(s)	506, 618
BstSLI	GKGCMC	1 cut(s)	1303
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	160, 388, 604, 632, 697, 858
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	3 cut(s)	572, 1085, 1175
BstXI	CCANNNNNNTGG	1 cut(s)	967
BstYI	RGATCY	3 cut(s)	572, 1085, 1175
BsuRI	GGCC	3 cut(s)	323, 381, 593
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	7 cut(s)	190, 294, 560, 734, 756, 847, 986
BtsIMutI	CAGTG	3 cut(s)	75, 571, 668
BveI	ACCTGC	2 cut(s)	962, 1061
Cac8I	GCNNGC	5 cut(s)	399, 426, 669, 690, 871
CfoI	GCGC	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	242, 926, 1025
CviAII	CATG	5 cut(s)	291, 383, 533, 640, 689
CviQI	GTAC	3 cut(s)	242, 926, 1025
DdeI	CTNAG	4 cut(s)	624, 794, 837, 1304
DpnI	GATC	4 cut(s)	574, 853, 1087, 1177
DpnII	GATC	4 cut(s)	572, 851, 1085, 1175
DraI	TTTAAA	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	3 cut(s)	270, 322, 417
EarI	CTCTTC	3 cut(s)	270, 322, 417
Eco130I	CCWWGG	1 cut(s)	639
Eco47III	AGCGCT	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	639
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	5 cut(s)	294, 386, 536, 643, 692
FaqI	GGGAC	2 cut(s)	747, 1243
FatI	CATG	5 cut(s)	290, 382, 532, 639, 688
FauNDI	CATATG	2 cut(s)	646, 1295
Fnu4HI	GCNGC	9 cut(s)	174, 285, 313, 402, 608, 618, 621, 686, 847
FokI	GGATG	7 cut(s)	177, 281, 567, 741, 763, 854, 973
Fsp4HI	GCNGC	9 cut(s)	174, 285, 313, 402, 608, 618, 621, 686, 847
FspBI	CTAG	5 cut(s)	228, 782, 980, 1079, 1245
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	9 cut(s)	174, 285, 313, 402, 608, 618, 621, 686, 847
GsaI	CCCAGC	3 cut(s)	727, 963, 1062
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	323, 381, 593
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	5 cut(s)	294, 386, 536, 643, 692
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	8 cut(s)	137, 218, 824, 904, 950, 1049, 1133, 1256
HphI	GGTGA	4 cut(s)	497, 948, 1047, 1265
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	6 cut(s)	52, 142, 377, 539, 1039, 1343
Hpy188III	TCNNGA	3 cut(s)	581, 782, 1173
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	234, 476, 545
HpyCH4III	ACNGT	2 cut(s)	566, 895
HpyCH4V	TGCA	9 cut(s)	151, 156, 251, 294, 404, 424, 620, 650, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 329, 338, 527
HpyF3I	CTNAG	4 cut(s)	624, 794, 837, 1304
Hsp92II	CATG	5 cut(s)	294, 386, 536, 643, 692
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	4 cut(s)	572, 851, 1085, 1175
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	6 cut(s)	160, 388, 604, 632, 697, 858
LweI	GCATC	4 cut(s)	154, 303, 995, 1178
MaeI	CTAG	5 cut(s)	228, 782, 980, 1079, 1245
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	4 cut(s)	574, 853, 1087, 1177
MboI	GATC	4 cut(s)	572, 851, 1085, 1175
MfeI	CAATTG	2 cut(s)	183, 1137
MflI	RGATCY	3 cut(s)	572, 1085, 1175
MhlI	GDGCHC	1 cut(s)	1303
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	7 cut(s)	132, 183, 197, 585, 1012, 1111, 1137
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	1265
MmeI	TCCRAC	2 cut(s)	1014, 1113
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	5 cut(s)	24, 200, 344, 789, 860
MslI	CAYNNNNRTG	2 cut(s)	939, 1038
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	766
MunI	CAATTG	2 cut(s)	183, 1137
Mva1269I	GAATGC	2 cut(s)	121, 253
MvaI	CCWGG	1 cut(s)	766
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	173, 329, 338, 527
NcoI	CCATGG	1 cut(s)	639
NdeI	CATATG	2 cut(s)	646, 1295
NdeII	GATC	4 cut(s)	572, 851, 1085, 1175
NlaIII	CATG	5 cut(s)	294, 386, 536, 643, 692
NlaIV	GGNNCC	1 cut(s)	1087
NmuCI	GTSAC	1 cut(s)	560
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	2 cut(s)	294, 692
PaeI	GCATGC	1 cut(s)	692
PaqCI	CACCTGC	2 cut(s)	962, 1061
PasI	CCCWGGG	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	322
PctI	GAATGC	2 cut(s)	121, 253
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	7 cut(s)	137, 218, 824, 904, 950, 1049, 1133
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	9 cut(s)	175, 286, 314, 403, 609, 619, 622, 687, 848
PleI	GAGTC	1 cut(s)	1264
PpsI	GAGTC	1 cut(s)	1264
PshBI	ATTAAT	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	764
PspFI	CCCAGC	3 cut(s)	723, 959, 1058
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	1087
PsrI	GAACNNNNNNTAC	2 cut(s)	561, 593
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	3 cut(s)	572, 1085, 1175
PvuII	CAGCTG	1 cut(s)	723
RsaI	GTAC	3 cut(s)	243, 927, 1026
RsaNI	GTAC	3 cut(s)	242, 926, 1025
RseI	CAYNNNNRTG	2 cut(s)	939, 1038
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	5 cut(s)	24, 200, 344, 789, 860
SatI	GCNGC	9 cut(s)	174, 285, 313, 402, 608, 618, 621, 686, 847
Sau3AI	GATC	4 cut(s)	572, 851, 1085, 1175
SchI	GAGTC	1 cut(s)	1265
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	1 cut(s)	1303
SfaNI	GCATC	4 cut(s)	154, 303, 995, 1178
SfcI	CTRYAG	2 cut(s)	506, 618
SmiMI	CAYNNNNRTG	2 cut(s)	939, 1038
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	7 cut(s)	132, 183, 197, 585, 1012, 1111, 1137
SsiI	CCGC	5 cut(s)	284, 312, 607, 775, 1231
SspMI	CTAG	5 cut(s)	228, 782, 980, 1079, 1245
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	566, 895
TaqI	TCGA	2 cut(s)	237, 902
TasI	AATT	7 cut(s)	132, 183, 197, 585, 1012, 1111, 1137
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	3 cut(s)	287, 315, 610
TfiI	GAWTC	7 cut(s)	137, 218, 824, 904, 950, 1049, 1133
Tru1I	TTAA	5 cut(s)	24, 200, 344, 789, 860
Tru9I	TTAA	5 cut(s)	24, 200, 344, 789, 860
TscAI	CASTG	3 cut(s)	75, 571, 668
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	6 cut(s)	173, 401, 617, 620, 685, 846
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	4 cut(s)	837, 923, 1022, 1282
TspGWI	ACGGA	2 cut(s)	115, 749
TspRI	CASTG	3 cut(s)	75, 571, 668
Van91I	CCANNNNNTGG	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	789
XapI	RAATTY	3 cut(s)	585, 1012, 1111
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	2 cut(s)	294, 692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1123
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	5 cut(s)	228, 782, 980, 1079, 1245
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.