Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007136

Physical Location & Seq

Genomic Coordinates Reverse (-)

10742927 .. 10746853

Gene Structure 3927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCAAGCTTTAGTTAGAGTTCAGGCTCGAGTGCGAGCAAGGCGCGTTCGCCTGGCATTGGAAGGTCAAACGGCTCAACAAAGGCTTCATGAACAACTTGCAAACAAGGCTCATGTTCGAGAAATAGAAGAAGGGTGGTGTGACAGTGTAGGTTCTGTTCAAGAAATTCAAGCCAAGTTGTTGAAGAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAACCATGGCATATGCTCTTGCTCATCAGTGGCAAGCTGGATCAAGGCAGCTGCCAGATCCATCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCTTTCTAGATATTAATCTTAGGGATGGAGTAATGGTACATTTGGATGAATCAGCTGATGATAAGAACAGCAGTATGCCCCAGTTAAAATCTGCTGGCAAGAAACCTTTTTCTTCAAATATTCAATCAAATATTTCAAGTCAAAAAGCTGGTCCGTGTCATTCTGATGGCTGTGATTCTTCACCTATTAAGTCAGCCGGAATGTTAGAGGCATCCAATAACCAATTTGAAAAGCAAAAGTCGAAGCCAAATTTGGATGATGCAGCTGAAGAAAGAAACTCCAAACCTGCTATTACTTCAAGATCCCATAGTAATCCAAAAGAGAGAGCCACAGAATCAGACAAACGGGCAAAGAAGCGGCTGTCTCTGCCAAATAGCAGAGGAAGTAATGTCTCCCAAACTTCCAGAGATCCTATTAGATCCAATGTCAAAGGGACGCCAAGTTCTCAGAAACCCATCAAGGCTAGATCAAAACCCAGTGGAAGAGGGGATTCAAACCCTACAAAGTCAGTCTCGCAAACCGTTGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

296

Amino Acids

32.83

Weight (kDa)

9.97

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22190 AT3G22190 AT3G22190 AT3G22190
fragaria_vesca	FvH4_3g26200
malus_domestica	MD03G1158100.v1.1 MD11G1174600.v1.1
prunus_persica	Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1
pyrus_communis	pycom03g11120 pycom11g14930
rosa_chinensis	RchiOBHm_Chr5g0048991
rosa_laevigata	RLG00000034576
rosa_multiflora	Rmu_sc0004058.1_g000010
rosa_roxburghii	Rroxscaffold_1G00032910
rosa_rugosa	Rorug05G0241700
rosa_samantha	Rh5AG321900 Rh5BG332200 Rh5CG357400 Rh5DG344000
rosa_wichuraiana	Rw5G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
AccII	CGCG	1 cut(s)	45
AciI	CCGC	2 cut(s)	355, 712
AclWI	GGATC	5 cut(s)	262, 266, 651, 758, 768
AcsI	RAATTY	2 cut(s)	165, 604
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	791
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	2 cut(s)	58, 346
AjnI	CCWGG	2 cut(s)	51, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AloI	GAACNNNNNNTCC	2 cut(s)	781, 813
AluBI	AGCT	7 cut(s)	8, 251, 265, 303, 410, 503, 620
AluI	AGCT	7 cut(s)	8, 251, 265, 303, 410, 503, 620
Alw26I	GTCTC	3 cut(s)	723, 751, 871
AlwI	GGATC	5 cut(s)	262, 266, 651, 758, 768
Ama87I	CYCGRG	1 cut(s)	27
ApeKI	GCWGC	6 cut(s)	197, 200, 262, 265, 300, 617
ApoI	RAATTY	2 cut(s)	165, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	506
BbvI	GCAGC	6 cut(s)	184, 187, 252, 274, 312, 629
BccI	CCATC	6 cut(s)	283, 321, 325, 374, 515, 818
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	2 cut(s)	53, 346
BcoDI	GTCTC	3 cut(s)	723, 751, 871
BfaI	CTAG	2 cut(s)	362, 819
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	7 cut(s)	198, 201, 263, 266, 301, 618, 713
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	7 cut(s)	199, 202, 264, 267, 302, 619, 714
Bme1390I	CCNGG	2 cut(s)	53, 346
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	506
BmrFI	CCNGG	2 cut(s)	53, 346
BmrI	ACTGGG	2 cut(s)	430, 825
BmsI	GCATC	3 cut(s)	575, 604, 871
BmuI	ACTGGG	2 cut(s)	430, 825
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	791
BsaJI	CCNNGG	3 cut(s)	219, 344, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 346
Bse1I	ACTGG	3 cut(s)	320, 436, 831
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	53, 346
BseDI	CCNNGG	3 cut(s)	219, 344, 345
BseGI	GGATG	5 cut(s)	336, 385, 406, 566, 616
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	58, 346
BseMII	CTCAG	1 cut(s)	815
BseNI	ACTGG	3 cut(s)	320, 436, 831
BseXI	GCAGC	6 cut(s)	184, 187, 252, 274, 312, 629
BseYI	CCCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	2 cut(s)	327, 802
BslI	CCNNNNNNNGG	2 cut(s)	58, 346
BsmAI	GTCTC	3 cut(s)	723, 751, 871
BsmFI	GGGAC	2 cut(s)	327, 802
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	2 cut(s)	355, 712
BspCNI	CTCAG	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	5 cut(s)	262, 266, 651, 758, 768
BsrI	ACTGG	3 cut(s)	320, 436, 831
BssECI	CCNNGG	3 cut(s)	219, 344, 345
BssMI	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
BssNI	GRCGYC	1 cut(s)	791
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	53, 346
Bst4CI	ACNGT	2 cut(s)	146, 877
Bst6I	CTCTTC	2 cut(s)	179, 832
BstACI	GRCGYC	1 cut(s)	791
BstC8I	GCNNGC	4 cut(s)	6, 36, 249, 451
BstDEI	CTNAG	3 cut(s)	204, 374, 801
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	5 cut(s)	336, 385, 406, 566, 616
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	6 cut(s)	257, 274, 659, 766, 776, 824
BstMAI	GTCTC	3 cut(s)	723, 751, 871
BstMBI	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 107, 721
BstNI	CCWGG	2 cut(s)	53, 346
BstSCI	CCNGG	2 cut(s)	51, 344
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	6 cut(s)	184, 187, 252, 274, 312, 629
BstX2I	RGATCY	4 cut(s)	271, 656, 763, 773
BstYI	RGATCY	4 cut(s)	271, 656, 763, 773
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	5 cut(s)	336, 385, 406, 566, 616
BtsIMutI	CAGTG	3 cut(s)	151, 248, 838
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	4 cut(s)	6, 36, 249, 451
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	3 cut(s)	89, 113, 220
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	3 cut(s)	204, 374, 801
DpnI	GATC	6 cut(s)	256, 273, 658, 765, 775, 823
DpnII	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
Eam1104I	CTCTTC	2 cut(s)	179, 832
EarI	CTCTTC	2 cut(s)	179, 832
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	51, 344
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	92, 116, 223
FaiI	YATR	7 cut(s)	90, 114, 221, 226, 228, 431, 663
FaqI	GGGAC	2 cut(s)	327, 802
FatI	CATG	3 cut(s)	88, 112, 219
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	7 cut(s)	198, 201, 263, 266, 301, 618, 713
FokI	GGATG	5 cut(s)	343, 392, 413, 553, 623
Fsp4HI	GCNGC	7 cut(s)	198, 201, 263, 266, 301, 618, 713
FspBI	CTAG	2 cut(s)	362, 819
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	7 cut(s)	198, 201, 263, 266, 301, 618, 713
GsaI	CCCAGC	1 cut(s)	307
HapII	CCGG	1 cut(s)	552
HgaI	GACGC	1 cut(s)	799
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	3 cut(s)	92, 116, 223
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	4 cut(s)	404, 530, 689, 845
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	1 cut(s)	528
Hpy188I	TCNGA	3 cut(s)	520, 694, 804
Hpy188III	TCNNGA	6 cut(s)	89, 119, 161, 362, 654, 759
HpyAV	CCTTC	2 cut(s)	56, 125
HpyCH4III	ACNGT	2 cut(s)	146, 877
HpyCH4V	TGCA	3 cut(s)	4, 101, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 107, 721
HpyF3I	CTNAG	3 cut(s)	204, 374, 801
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	3 cut(s)	92, 116, 223
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
Lsp1109I	GCAGC	6 cut(s)	184, 187, 252, 274, 312, 629
LweI	GCATC	3 cut(s)	575, 604, 871
MaeI	CTAG	2 cut(s)	362, 819
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	6 cut(s)	256, 273, 658, 765, 775, 823
MboI	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
MboII	GAAGA	6 cut(s)	140, 196, 459, 525, 635, 849
MflI	RGATCY	4 cut(s)	271, 656, 763, 773
MluCI	AATT	3 cut(s)	165, 578, 604
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	5 cut(s)	180, 187, 556, 728, 833
MseI	TTAA	3 cut(s)	369, 440, 543
MslI	CAYNNNNRTG	2 cut(s)	399, 519
MspA1I	CMGCKG	4 cut(s)	265, 303, 410, 620
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	53, 346
MvaI	CCWGG	2 cut(s)	53, 346
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	40, 107, 721
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
NlaIII	CATG	3 cut(s)	92, 116, 223
NmuCI	GTSAC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	27
PagI	TCATGA	1 cut(s)	88
PasI	CCCWGGG	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	404, 530, 689, 845
PkrI	GCNGC	7 cut(s)	199, 202, 264, 267, 302, 619, 714
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	51, 344
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	51, 344
PspPI	GGNCC	1 cut(s)	506
PspXI	VCTCGAGB	1 cut(s)	27
PsrI	GAACNNNNNNTAC	2 cut(s)	141, 173
PsuI	RGATCY	4 cut(s)	271, 656, 763, 773
PvuII	CAGCTG	4 cut(s)	265, 303, 410, 620
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	2 cut(s)	399, 519
SaqAI	TTAA	3 cut(s)	369, 440, 543
SatI	GCNGC	7 cut(s)	198, 201, 263, 266, 301, 618, 713
Sau3AI	GATC	6 cut(s)	254, 271, 656, 763, 773, 821
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	53, 346
SfaNI	GCATC	3 cut(s)	575, 604, 871
Sfr274I	CTCGAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	399, 519
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	165, 578, 604
SsiI	CCGC	2 cut(s)	355, 712
SspI	AATATT	2 cut(s)	475, 487
SspMI	CTAG	2 cut(s)	362, 819
StyD4I	CCNGG	2 cut(s)	51, 344
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	146, 877
TaqI	TCGA	3 cut(s)	28, 118, 596
TasI	AATT	3 cut(s)	165, 578, 604
TauI	GCSGC	1 cut(s)	715
TfiI	GAWTC	4 cut(s)	404, 530, 689, 845
Tru1I	TTAA	3 cut(s)	369, 440, 543
Tru9I	TTAA	3 cut(s)	369, 440, 543
TscAI	CASTG	3 cut(s)	151, 248, 838
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	6 cut(s)	197, 200, 262, 265, 300, 617
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	77, 105, 417
TspGWI	ACGGA	2 cut(s)	329, 498
TspRI	CASTG	3 cut(s)	151, 248, 838
VpaK11BI	GGWCC	1 cut(s)	506
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	2 cut(s)	165, 604
XbaI	TCTAGA	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	2 cut(s)	362, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.