Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007136

Physical Location & Seq

Genomic Coordinates Reverse (-)

47814267 .. 47823277

Gene Structure 9011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCAAGCTTTAGTTAGAGTTCAGGCTCGTGTGAGAGCAAGGCGTGTTCGTCTGGCATTGGAAGGTGAAACGACAGAAGATAGACTACAGCAACAACTTGCTAATGAGGCTCGTGTCCGAGAAATAGAAGAAGGATGGTGTGACAGTGTAGGATCTGTTCAAGAAATTCAGGCCAAGTTGTTGAAGCGGCAAGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCGCTTGCTCATCAGTGGCAAGCTGGAGCAAGACAGCAGCATGCTCCCTCTGGGTTTGAACCAGATAAAAACAGCTGGGGATGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCTTTCTAGATATTAATCTTAGAGATGGAGTAATGGTAGATGAGAATGAATCAACAGAGGCCAAGGATGGCAGCAGATCAGGGTTAAAATCTACTGGCAAGAAACCTATTGCTTCAACTGTTCAATCGAATCTTGTAAGTCAAAAAGCTGTACCCTTTCATTCCAATGGGTGTGATTCTTCACCCAGCAAGTCGGCAGGTGTGCTAGAGGCATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCTGTACACTTTCATTCTGATGGGTGTGATTCTTCACCCAGCAAGTCGGCAGGTGTGCTAGAGGCATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCCTGTTTGGAAGATTCAATTGAAAGAGGAAACTTGAAACCTGATATTGCATCAAGATCCCATAGTAATCCAAAAGAGAGAACAACAGGATTGAATAAACAGGCGAAGAAGCGGTTGTCTCTGCCTAGCAATGGAGGTCTTAGTGGTCAAACTGCCAGACATCCTATTAGATCTAATGTCAAAGGGACACCCAGTTCTCAGAAGCCCATCAAGGCTAGATCAAAACCCAGTGGGAAAGGGGACTCTTCAAAGTCATCCCCGCAAGTCGTTGATATGCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

327

Amino Acids

35.75

Weight (kDa)

9.86

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22190 AT3G22190 AT3G22190 AT3G22190
fragaria_vesca	FvH4_3g26200
malus_domestica	MD03G1158100.v1.1 MD11G1174600.v1.1
prunus_persica	Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1
pyrus_communis	pycom03g11120 pycom11g14930
rosa_chinensis	RchiOBHm_Chr5g0048991
rosa_laevigata	RLG00000034576
rosa_multiflora	Rmu_sc0004058.1_g000010
rosa_roxburghii	Rroxscaffold_1G00032910
rosa_rugosa	Rorug05G0241700
rosa_samantha	Rh5AG321900 Rh5BG332200 Rh5CG357400 Rh5DG344000
rosa_wichuraiana	Rw5G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	542, 641
Acc36I	ACCTGC	2 cut(s)	542, 641
AciI	CCGC	4 cut(s)	187, 355, 811, 959
AclWI	GGATC	2 cut(s)	160, 750
AcsI	RAATTY	3 cut(s)	165, 592, 691
AfaI	GTAC	2 cut(s)	507, 606
AfiI	CCNNNNNNNGG	2 cut(s)	346, 830
AjnI	CCWGG	1 cut(s)	344
AloI	GAACNNNNNNTCC	2 cut(s)	877, 909
AluBI	AGCT	5 cut(s)	8, 203, 251, 303, 503
AluI	AGCT	5 cut(s)	8, 203, 251, 303, 503
Alw26I	GTCTC	1 cut(s)	822
AlwI	GGATC	2 cut(s)	160, 750
AoxI	GGCC	2 cut(s)	171, 414
ApeKI	GCWGC	4 cut(s)	197, 200, 265, 426
ApoI	RAATTY	3 cut(s)	165, 592, 691
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	77, 528, 627
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BauI	CACGAG	2 cut(s)	27, 111
BbvI	GCAGC	4 cut(s)	184, 212, 277, 438
BccI	CCATC	8 cut(s)	129, 303, 321, 325, 374, 416, 614, 914
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	5 cut(s)	362, 560, 659, 825, 915
BfmI	CTRYAG	2 cut(s)	86, 198
BfuAI	ACCTGC	2 cut(s)	542, 641
BglII	AGATCT	1 cut(s)	869
BisI	GCNGC	5 cut(s)	188, 198, 201, 266, 427
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	189, 199, 202, 267, 428
Bme1390I	CCNGG	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	2 cut(s)	885, 921
BmsI	GCATC	3 cut(s)	575, 674, 758
BmuI	ACTGGG	2 cut(s)	885, 921
BpmI	CTGGAG	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	4 cut(s)	219, 344, 345, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 830
Bse1I	ACTGG	4 cut(s)	320, 454, 891, 927
Bse3DI	GCAATG	1 cut(s)	835
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	4 cut(s)	219, 344, 345, 417
BseGI	GGATG	8 cut(s)	140, 314, 336, 427, 566, 665, 859, 953
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	346, 830
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	1 cut(s)	911
BseNI	ACTGG	4 cut(s)	320, 454, 891, 927
BseXI	GCAGC	4 cut(s)	184, 212, 277, 438
BseYI	CCCAGC	3 cut(s)	303, 539, 638
BshFI	GGCC	2 cut(s)	173, 416
BslFI	GGGAC	3 cut(s)	327, 898, 953
BslI	CCNNNNNNNGG	2 cut(s)	346, 830
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	3 cut(s)	327, 898, 953
BsnI	GGCC	2 cut(s)	173, 416
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	5 cut(s)	152, 431, 755, 869, 917
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	4 cut(s)	187, 355, 811, 959
BspANI	GGCC	2 cut(s)	173, 416
BspCNI	CTCAG	1 cut(s)	910
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	2 cut(s)	542, 641
BspPI	GGATC	2 cut(s)	160, 750
BsrDI	GCAATG	1 cut(s)	835
BsrGI	TGTACA	1 cut(s)	604
BsrI	ACTGG	4 cut(s)	320, 454, 891, 927
BssECI	CCNNGG	4 cut(s)	219, 344, 345, 417
BssMI	GATC	5 cut(s)	152, 431, 755, 869, 917
BssSI	CACGAG	2 cut(s)	27, 111
BssT1I	CCWWGG	2 cut(s)	219, 417
Bst2BI	CACGAG	2 cut(s)	27, 111
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	146, 475
Bst6I	CTCTTC	1 cut(s)	949
BstAUI	TGTACA	1 cut(s)	604
BstC8I	GCNNGC	4 cut(s)	6, 234, 249, 270
BstDEI	CTNAG	4 cut(s)	204, 374, 839, 897
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	8 cut(s)	140, 314, 336, 427, 566, 665, 859, 953
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	5 cut(s)	155, 434, 758, 872, 920
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	5 cut(s)	152, 431, 755, 869, 917
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	2 cut(s)	86, 198
BstV1I	GCAGC	4 cut(s)	184, 212, 277, 438
BstX2I	RGATCY	3 cut(s)	152, 755, 869
BstYI	RGATCY	3 cut(s)	152, 755, 869
BsuRI	GGCC	2 cut(s)	173, 416
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	8 cut(s)	140, 314, 336, 427, 566, 665, 859, 953
BtsIMutI	CAGTG	3 cut(s)	151, 248, 934
BveI	ACCTGC	2 cut(s)	542, 641
Cac8I	GCNNGC	4 cut(s)	6, 234, 249, 270
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	506, 605
CviAII	CATG	2 cut(s)	220, 269
CviQI	GTAC	2 cut(s)	506, 605
DdeI	CTNAG	4 cut(s)	204, 374, 839, 897
DpnI	GATC	5 cut(s)	154, 433, 757, 871, 919
DpnII	GATC	5 cut(s)	152, 431, 755, 869, 917
Eam1104I	CTCTTC	1 cut(s)	949
EarI	CTCTTC	1 cut(s)	949
Eco130I	CCWWGG	2 cut(s)	219, 417
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	219, 417
ErhI	CCWWGG	2 cut(s)	219, 417
FaeI	CATG	2 cut(s)	223, 272
FaiI	YATR	6 cut(s)	221, 226, 228, 270, 762, 974
FaqI	GGGAC	3 cut(s)	327, 898, 953
FatI	CATG	2 cut(s)	219, 268
FauI	CCCGC	1 cut(s)	966
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	188, 198, 201, 266, 427
FokI	GGATG	8 cut(s)	147, 321, 343, 434, 553, 652, 846, 940
Fsp4HI	GCNGC	5 cut(s)	188, 198, 201, 266, 427
FspBI	CTAG	5 cut(s)	362, 560, 659, 825, 915
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	5 cut(s)	188, 198, 201, 266, 427
GsaI	CCCAGC	3 cut(s)	307, 543, 642
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	173, 416
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	223, 272
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	6 cut(s)	404, 484, 530, 629, 713, 941
HphI	GGTGA	3 cut(s)	77, 528, 627
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	3 cut(s)	119, 619, 900
Hpy188III	TCNNGA	3 cut(s)	161, 362, 753
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	2 cut(s)	56, 125
HpyCH4III	ACNGT	2 cut(s)	146, 475
HpyCH4V	TGCA	4 cut(s)	4, 200, 749, 976
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	4 cut(s)	204, 374, 839, 897
Hsp92II	CATG	2 cut(s)	223, 272
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	5 cut(s)	152, 431, 755, 869, 917
LmnI	GCTCC	2 cut(s)	254, 277
Lsp1109I	GCAGC	4 cut(s)	184, 212, 277, 438
LweI	GCATC	3 cut(s)	575, 674, 758
MaeI	CTAG	5 cut(s)	362, 560, 659, 825, 915
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	5 cut(s)	154, 433, 757, 871, 919
MboI	GATC	5 cut(s)	152, 431, 755, 869, 917
MboII	GAAGA	7 cut(s)	89, 140, 525, 624, 722, 817, 936
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	3 cut(s)	152, 755, 869
MluCI	AATT	4 cut(s)	165, 592, 691, 717
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	2 cut(s)	594, 693
MnlI	CCTC	8 cut(s)	100, 187, 286, 406, 556, 655, 719, 827
MseI	TTAA	3 cut(s)	369, 440, 982
MslI	CAYNNNNRTG	2 cut(s)	519, 618
MspA1I	CMGCKG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	5 cut(s)	152, 431, 755, 869, 917
NlaIII	CATG	2 cut(s)	223, 272
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PaqCI	CACCTGC	2 cut(s)	542, 641
PasI	CCCWGGG	1 cut(s)	345
PfeI	GAWTC	5 cut(s)	404, 484, 530, 629, 713
PkrI	GCNGC	5 cut(s)	189, 199, 202, 267, 428
PleI	GAGTC	1 cut(s)	935
PpsI	GAGTC	1 cut(s)	935
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	3 cut(s)	303, 539, 638
PspGI	CCWGG	1 cut(s)	344
PsrI	GAACNNNNNNTAC	2 cut(s)	141, 173
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	3 cut(s)	152, 755, 869
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	2 cut(s)	507, 606
RsaNI	GTAC	2 cut(s)	506, 605
RseI	CAYNNNNRTG	2 cut(s)	519, 618
SaqAI	TTAA	3 cut(s)	369, 440, 982
SatI	GCNGC	5 cut(s)	188, 198, 201, 266, 427
Sau3AI	GATC	5 cut(s)	152, 431, 755, 869, 917
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	1 cut(s)	346
SfaNI	GCATC	3 cut(s)	575, 674, 758
SfcI	CTRYAG	2 cut(s)	86, 198
SmiMI	CAYNNNNRTG	2 cut(s)	519, 618
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	4 cut(s)	165, 592, 691, 717
SsiI	CCGC	4 cut(s)	187, 355, 811, 959
SspMI	CTAG	5 cut(s)	362, 560, 659, 825, 915
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	219, 417
TaaI	ACNGT	2 cut(s)	146, 475
TaqI	TCGA	1 cut(s)	482
TasI	AATT	4 cut(s)	165, 592, 691, 717
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	5 cut(s)	404, 484, 530, 629, 713
Tru1I	TTAA	3 cut(s)	369, 440, 982
Tru9I	TTAA	3 cut(s)	369, 440, 982
TscAI	CASTG	3 cut(s)	151, 248, 934
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	4 cut(s)	197, 200, 265, 426
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	417, 503, 602
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	3 cut(s)	151, 248, 934
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	3 cut(s)	165, 592, 691
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XspI	CTAG	5 cut(s)	362, 560, 659, 825, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.