AT3G23340
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8350803 .. 8354021
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23340.2

Sequence Viewer

Length: 1329 bp
ATGGATCATGTAATCGGTGGCAAGTTCAAGTTAGGTAGGAAGATTGGTAGTGGATCATTCGGTGAACTTTATATTGGGATTAATGTTCAAACTGGAGAAGAAGTTGCTCTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATCAAAAGTATACATGCTTCTTCAAGGAGGGACGGGTGTTCCGCATATCAAATGGTTCGGTGTTGAGGGTAACTACAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTATTGCACTCGGAGTTTTTCTTTGAAAACTGTTCTAATGCTTGCTGATCAGTTAATAAACAGAGTTGAGTACATGCACTCTCGAGGATTTCTTCACCGTGATATTAAACCGGATAACTTTTTGATGGGTCTCGGTCGCAAAGCAAACCAAGTGTACATTATTGATTATGGGCTTGCTAAAAAGTATAGAGATCTTCAGACACACAAGCATATACCTTACAGGGAAAATAAGAATCTGACTGGAACTGCTAGGTATGCAAGTGTCAACACACACCTTGGCATTGAGCAAAGTAGACGAGATGATCTGGAGTCTCTTGGTTATGTTCTGATGTATTTTATACGAGGAAGTTTACCATGGCAAGGTCTAAAAGCTGGTACTAAGAAACAGAAATACGAGAAGATAAGTGAAAAGAAGATGCTTACTCCCGTAGAGGTTCTTTGCAAGTCATATCCATCCGAGTTCACATCATATTTCCATTACTGCCGTTCATTGAGGTTTGAGGATAAACCAGATTATTCATATCTGAAAAGACTTTTCAGGGACCTTTTTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAATATCCTCAGAGTGGCTCTATTTCAAAACCAAGGCCAAATCCTAAACCAGCTCTAGACCCTCCAGGACCATCTGCAGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTACGAGAAAGATTCTCAGGTGCAGTTGAAGCATTCGCTAGACGAAATGTACCGAGTCATGGCATTCGCCCGAAGCACATTTTTTCTGATGATGCTTCCAAAGAAGTGCAAGTGTCTGAAAAAACCCGAAATGAGATTGCTACAAAGATGGCAGTGATGTCTAGCAGCCAACCTGGCTCATCAGGTGAGCTGAGTGAGAACCGCTCAAGTAAACTTTTTTCAAGCAGTGCCCAAAAGATTCAACCGGTGCAAGAAACTAAGTTATCTGCAAGGCTTGGGCGTGATGACGGCCTGAGAAGCTTCGATATGCTTACTATCGGTTCCGGAAAGCGGAAATGA

Protein Analysis

442

Amino Acids

50.38

Weight (kDa)

9.52

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 7 - 213 1.2e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 74 - 256 1.5e-08 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 103 - 192 1.3e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1194
AccI GTMKAC 2 cut(s) 165, 574
AccIII TCCGGA 1 cut(s) 1313
AciI CCGC 3 cut(s) 197, 1192, 1321
AclWI GGATC 3 cut(s) 12, 61, 996
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 4 cut(s) 353, 437, 658, 1041
AfiI CCNNNNNNNGG 5 cut(s) 641, 893, 980, 1049, 1320
AflII CTTAAG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 1234
AjnI CCWGG 2 cut(s) 943, 1162
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 7 cut(s) 115, 145, 264, 653, 932, 1180, 1290
AluI AGCT 7 cut(s) 115, 145, 264, 653, 932, 1180, 1290
Alw26I GTCTC 2 cut(s) 416, 597
AlwI GGATC 3 cut(s) 12, 61, 996
Ama87I CYCGRG 1 cut(s) 363
Aor13HI TCCGGA 1 cut(s) 1313
AoxI GGCC 2 cut(s) 914, 1279
ApeKI GCWGC 1 cut(s) 1155
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
AseI ATTAAT 1 cut(s) 81
AsiGI ACCGGT 1 cut(s) 1234
AspS9I GGNCC 3 cut(s) 257, 823, 947
AsuHPI GGTGA 3 cut(s) 74, 368, 1187
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 3 cut(s) 257, 823, 947
BaeGI GKGCMC 1 cut(s) 1222
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 2 cut(s) 134, 276
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 1167
BccI CCATC 4 cut(s) 400, 742, 958, 1132
BceAI ACGGC 2 cut(s) 750, 1294
BciT130I CCWGG 2 cut(s) 945, 1164
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 416, 597
BfaI CTAG 4 cut(s) 531, 935, 1029, 1152
BfmI CTRYAG 2 cut(s) 954, 975
BfrI CTTAAG 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 1164
BglII AGATCT 1 cut(s) 472
BisI GCNGC 1 cut(s) 1156
BlsI GCNGC 1 cut(s) 1157
Bme1390I CCNGG 2 cut(s) 945, 1164
Bme18I GGWCC 3 cut(s) 257, 823, 947
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 3 cut(s) 257, 823, 947
BmiI GGNNCC 3 cut(s) 120, 824, 1312
BmrFI CCNGG 2 cut(s) 945, 1164
BmsI GCATC 3 cut(s) 145, 687, 1072
BpiI GAAGAC 2 cut(s) 134, 276
BplI GAGNNNNNCTC 2 cut(s) 1178, 1210
BpmI CTGGAG 3 cut(s) 114, 608, 927
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 1180
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 3 cut(s) 556, 635, 911
BsaWI WCCGGW 3 cut(s) 391, 1234, 1313
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 5 cut(s) 641, 893, 980, 1049, 1320
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 2 cut(s) 97, 526
BseAI TCCGGA 1 cut(s) 1313
BseBI CCWGG 2 cut(s) 945, 1164
BseDI CCNNGG 3 cut(s) 556, 635, 911
BseGI GGATG 2 cut(s) 136, 734
BseLI CCNNNNNNNGG 5 cut(s) 641, 893, 980, 1049, 1320
BseMII CTCAG 5 cut(s) 155, 902, 1020, 1172, 1274
BseNI ACTGG 2 cut(s) 97, 526
BseSI GKGCMC 1 cut(s) 1222
BseXI GCAGC 1 cut(s) 1167
BsgI GTGCAG 1 cut(s) 1032
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 2 cut(s) 916, 1281
BshTI ACCGGT 1 cut(s) 1234
BsiEI CGRYCG 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 3 cut(s) 392, 1235, 1314
BslFI GGGAC 2 cut(s) 199, 836
BslI CCNNNNNNNGG 5 cut(s) 641, 893, 980, 1049, 1320
BsmAI GTCTC 2 cut(s) 416, 597
BsmFI GGGAC 2 cut(s) 199, 836
BsmI GAATGC 2 cut(s) 1022, 1053
BsnI GGCC 2 cut(s) 916, 1281
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 1222
Bsp13I TCCGGA 1 cut(s) 1313
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 6 cut(s) 4, 53, 328, 472, 583, 988
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 3 cut(s) 197, 1192, 1321
BspANI GGCC 2 cut(s) 916, 1281
BspCNI CTCAG 5 cut(s) 154, 901, 1019, 1173, 1275
BspEI TCCGGA 1 cut(s) 1313
BspLI GGNNCC 3 cut(s) 120, 824, 1312
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 3 cut(s) 12, 61, 996
BspTI CTTAAG 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 1194
BsrFI RCCGGY 1 cut(s) 1234
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 2 cut(s) 97, 526
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 3 cut(s) 556, 635, 911
BssMI GATC 6 cut(s) 4, 53, 328, 472, 583, 988
BssNAI GTATAC 1 cut(s) 166
BssT1I CCWWGG 3 cut(s) 556, 635, 911
Bst1107I GTATAC 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 945, 1164
Bst4CI ACNGT 2 cut(s) 313, 380
BstAFI CTTAAG 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 324, 456
BstDEI CTNAG 7 cut(s) 141, 660, 888, 1006, 1181, 1248, 1283
BstDSI CCRYGG 1 cut(s) 635
BstF5I GGATG 2 cut(s) 136, 734
BstKTI GATC 6 cut(s) 7, 56, 331, 475, 586, 991
BstMAI GTCTC 2 cut(s) 416, 597
BstMBI GATC 6 cut(s) 4, 53, 328, 472, 583, 988
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 5 cut(s) 142, 536, 1019, 1164, 1287
BstNI CCWGG 2 cut(s) 945, 1164
BstNSI RCATGY 2 cut(s) 172, 358
BstSCI CCNGG 2 cut(s) 943, 1162
BstSFI CTRYAG 2 cut(s) 954, 975
BstSLI GKGCMC 1 cut(s) 1222
BstV1I GCAGC 1 cut(s) 1167
BstV2I GAAGAC 2 cut(s) 134, 276
BstX2I RGATCY 2 cut(s) 472, 988
BstYI RGATCY 2 cut(s) 472, 988
BstZ17I GTATAC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 916, 1281
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 2 cut(s) 136, 734
BtsI GCAGTG 2 cut(s) 1149, 1222
BtsIMutI CAGTG 2 cut(s) 1149, 1222
Cac8I GCNNGC 2 cut(s) 324, 456
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 3 cut(s) 257, 823, 947
Csp6I GTAC 4 cut(s) 352, 436, 657, 1040
CspAI ACCGGT 1 cut(s) 1234
CviAII CATG 5 cut(s) 8, 169, 355, 636, 1049
CviQI GTAC 4 cut(s) 352, 436, 657, 1040
DdeI CTNAG 7 cut(s) 141, 660, 888, 1006, 1181, 1248, 1283
DpnI GATC 6 cut(s) 6, 55, 330, 474, 585, 990
DpnII GATC 6 cut(s) 4, 53, 328, 472, 583, 988
Eco130I CCWWGG 3 cut(s) 556, 635, 911
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 3 cut(s) 257, 823, 947
Eco57I CTGAAG 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 823
EcoRII CCWGG 2 cut(s) 943, 1162
EcoT14I CCWWGG 3 cut(s) 556, 635, 911
ErhI CCWWGG 3 cut(s) 556, 635, 911
FaeI CATG 5 cut(s) 11, 172, 358, 639, 1052
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 2 cut(s) 199, 836
FatI CATG 5 cut(s) 7, 168, 354, 635, 1048
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 2 cut(s) 165, 574
Fnu4HI GCNGC 1 cut(s) 1156
FokI GGATG 2 cut(s) 123, 721
Fsp4HI GCNGC 1 cut(s) 1156
FspBI CTAG 4 cut(s) 531, 935, 1029, 1152
GluI GCNGC 1 cut(s) 1156
GsuI CTGGAG 3 cut(s) 114, 608, 927
HaeIII GGCC 2 cut(s) 916, 1281
HapII CCGG 3 cut(s) 392, 1235, 1314
Hin1II CATG 5 cut(s) 11, 172, 358, 639, 1052
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 262, 1288
HinfI GANTC 6 cut(s) 155, 514, 590, 1002, 1045, 1228
HpaII CCGG 3 cut(s) 392, 1235, 1314
HphI GGTGA 3 cut(s) 74, 368, 1187
Hpy166II GTNNAC 8 cut(s) 65, 166, 436, 547, 575, 632, 744, 1202
Hpy188I TCNGA 9 cut(s) 294, 480, 519, 609, 739, 807, 891, 1078, 1108
Hpy188III TCNNGA 6 cut(s) 363, 587, 836, 877, 935, 1314
Hpy8I GTNNAC 8 cut(s) 65, 166, 436, 547, 575, 632, 744, 1202
HpyAV CCTTC 2 cut(s) 260, 833
HpyCH4III ACNGT 2 cut(s) 313, 380
HpyCH4V TGCA 9 cut(s) 288, 358, 539, 723, 956, 1013, 1099, 1240, 1259
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 536, 1019, 1164, 1287
HpyF3I CTNAG 7 cut(s) 141, 660, 888, 1006, 1181, 1248, 1283
Hsp92II CATG 5 cut(s) 11, 172, 358, 639, 1052
Kpn2I TCCGGA 1 cut(s) 1313
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 6 cut(s) 4, 53, 328, 472, 583, 988
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 1167
LweI GCATC 3 cut(s) 145, 687, 1072
MaeI CTAG 4 cut(s) 531, 935, 1029, 1152
MaeIII GTNAC 1 cut(s) 224
MalI GATC 6 cut(s) 6, 55, 330, 474, 585, 990
MbiI CCGCTC 1 cut(s) 1194
MboI GATC 6 cut(s) 4, 53, 328, 472, 583, 988
MboII GAAGA 9 cut(s) 52, 110, 139, 167, 281, 365, 467, 691, 706
MfeI CAATTG 1 cut(s) 232
MflI RGATCY 2 cut(s) 472, 988
MhlI GDGCHC 1 cut(s) 1222
MluCI AATT 1 cut(s) 232
MlyI GAGTC 2 cut(s) 599, 1054
MroI TCCGGA 1 cut(s) 1313
MseI TTAA 4 cut(s) 81, 111, 335, 387
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 3 cut(s) 392, 1235, 1314
MspR9I CCNGG 2 cut(s) 945, 1164
MunI CAATTG 1 cut(s) 232
Mva1269I GAATGC 2 cut(s) 1022, 1053
MvaI CCWGG 2 cut(s) 945, 1164
MwoI GCNNNNNNNGC 5 cut(s) 142, 536, 1019, 1164, 1287
NcoI CCATGG 1 cut(s) 635
NdeII GATC 6 cut(s) 4, 53, 328, 472, 583, 988
NlaIII CATG 5 cut(s) 11, 172, 358, 639, 1052
NlaIV GGNNCC 3 cut(s) 120, 824, 1312
NspI RCATGY 2 cut(s) 172, 358
PaeR7I CTCGAG 1 cut(s) 363
PctI GAATGC 2 cut(s) 1022, 1053
PfeI GAWTC 4 cut(s) 155, 514, 1002, 1228
PfoI TCCNGGA 1 cut(s) 943
PinAI ACCGGT 1 cut(s) 1234
PkrI GCNGC 1 cut(s) 1157
PleI GAGTC 2 cut(s) 598, 1053
PpsI GAGTC 2 cut(s) 598, 1053
PpuMI RGGWCCY 1 cut(s) 823
PshBI ATTAAT 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 2 cut(s) 943, 1162
PspGI CCWGG 2 cut(s) 943, 1162
PspN4I GGNNCC 3 cut(s) 120, 824, 1312
PspPI GGNCC 3 cut(s) 257, 823, 947
PspPPI RGGWCCY 1 cut(s) 823
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 2 cut(s) 472, 988
RsaI GTAC 4 cut(s) 353, 437, 658, 1041
RsaNI GTAC 4 cut(s) 352, 436, 657, 1040
SaqAI TTAA 4 cut(s) 81, 111, 335, 387
SatI GCNGC 1 cut(s) 1156
Sau3AI GATC 6 cut(s) 4, 53, 328, 472, 583, 988
Sau96I GGNCC 3 cut(s) 257, 823, 947
SchI GAGTC 2 cut(s) 599, 1054
ScrFI CCNGG 2 cut(s) 945, 1164
SduI GDGCHC 1 cut(s) 1222
SfaNI GCATC 3 cut(s) 145, 687, 1072
SfcI CTRYAG 2 cut(s) 954, 975
Sfr274I CTCGAG 1 cut(s) 363
SinI GGWCC 3 cut(s) 257, 823, 947
SlaI CTCGAG 1 cut(s) 363
SmlI CTYRAG 3 cut(s) 110, 363, 1195
SmoI CTYRAG 3 cut(s) 110, 363, 1195
Sse9I AATT 1 cut(s) 232
SsiI CCGC 3 cut(s) 197, 1192, 1321
SspMI CTAG 4 cut(s) 531, 935, 1029, 1152
StyD4I CCNGG 2 cut(s) 943, 1162
StyI CCWWGG 3 cut(s) 556, 635, 911
TaaI ACNGT 2 cut(s) 313, 380
TaqI TCGA 2 cut(s) 364, 1293
TaqII GACCGA 1 cut(s) 404
TasI AATT 1 cut(s) 232
TatI WGTACW 2 cut(s) 351, 435
TfiI GAWTC 4 cut(s) 155, 514, 1002, 1228
Tru1I TTAA 4 cut(s) 81, 111, 335, 387
Tru9I TTAA 4 cut(s) 81, 111, 335, 387
TscAI CASTG 2 cut(s) 1149, 1222
TseI GCWGC 1 cut(s) 1155
TspDTI ATGAA 4 cut(s) 168, 759, 789, 981
TspRI CASTG 2 cut(s) 1149, 1222
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 3 cut(s) 257, 823, 947
VspI ATTAAT 1 cut(s) 81
XbaI TCTAGA 1 cut(s) 934
XceI RCATGY 2 cut(s) 172, 358
XhoI CTCGAG 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 165, 574
XspI CTAG 4 cut(s) 531, 935, 1029, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.