AT5G43320

Casein Kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17385760 .. 17389600
3841 bp
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UTR
Exon/CDS
Intron
AT5G43320.3

Sequence Viewer

Length: 1443 bp
ATGGATCGTGTGGTTGGTGGTAAGTATAAGCTTGGACGTAAACTTGGAAGTGGATCATTTGGTGAACTTTTTCTAGGGGTTAATGTACAAACTGGAGAAGAAGTTGCTGTGAAGCTTGAACCTGCGAGAGCTAGACATCCTCAACTTCATTATGAATCAAAGCTTTATATGCTTCTTCAAGGAGGAACTGGTATTCCACATCTAAAATGGTATGGGGTTGAGGGTGAATACAACTGTATGGTGATTGACCTTTTGGGTCCGAGTATGGAGGATTTATTTAATTATTGTAGTCGGAGGTTCAATCTAAAGACGGTTCTAATGCTCGCAGATCAAATGATCAATAGAGTTGAGTATATGCATGTCCGGGGATTTCTTCATCGTGACATAAAGCCTGATAACTTTTTGATGGGTCTTGGACGCAAAGCGAACCAGGTGTACATCATTGACTACGGACTTGCAAAAAAGTATAGAGATCTCCAAACTCATAGACACATTCCCTACAGGGAAAACAAGAATCTTACTGGAACAGCTCGATATGCAAGTGTTAACACTCATCTTGGAATTGAGCAAAGTAGGAGGGACGATCTGGAATCTCTTGGCTACGTGCTTATGTATTTTCTTCGAGGAAGTCTTCCTTGGCAAGGCCTTCGTGCGGGTACCAAAAAACAGAAGTATGACAAGATCAGCGAAAAGAAAAGGCTTACACCTGTAGAGGTTCTCTGTAAATCCTTTCCACCTGAGTTCACATCATACTTCCTCTATGTACGATCATTGCGGTTTGAAGACAAACCAGATTATCCATACCTAAAGAGGCTTTTCAGGGATCTCTTTATTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATCTTGAAGTATCCACAGTTTAGTTCGGGCTCCAGCTCTAGCTCCAAGCCAAGATCAAGCCTGAGACCAGCTATGAATCCTCCAGTACCAATTGCCGAAAGACCAGATAAACCTTCAGCTGGAGCTGGGCAAGACAGTCGAGATAGATTCTCAGGTGCTTTAGAGGCATATGCTAGAAGAAATGGCTCAGGAAGCGGTGTGGTACAAGCTGATCGATCTAGACCAAGAACCTCAGAGAATGTATTAGCATCGTCAAAGGATACAACACCACAAAACTATGAGAGAGTCGAAAGACCAATCTCTTCAACAAGACACGCAAGTTCTTCAAGAAAAGCTGTTGTATCGAGCGTACGAGCCACTTCTTCAGCTGATTTCACAGAGAACCGCTCTAGCAGAGTTGTCCCAAGCAATGGCCGTTCCTCAACCGCTCAGAGGACTCAGCTCGTCCCTGACCCAACCACTAGACCGTCATCTTCTTCTTTTACCCGAGCTGCGCCGTCGAGGACTGCTCGTGACATCACGCTCCAGAGCTTTGAGCTACTCACCATAGGGAATGGAAAGAGGAAGTGA

Protein Analysis

480

Amino Acids

54.44

Weight (kDa)

9.93

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 228 2.2e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 237 3.5e-13 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 119 - 206 2.6e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 656
AccB7I CCANNNNNTGG 1 cut(s) 1283
AccBSI CCGCTC 2 cut(s) 1260, 1301
AciI CCGC 5 cut(s) 653, 775, 1068, 1258, 1299
AclWI GGATC 3 cut(s) 12, 61, 831
AcoI YGGCCR 1 cut(s) 1285
AcuI CTGAAG 2 cut(s) 972, 1221
AfaI GTAC 7 cut(s) 87, 437, 658, 765, 960, 1077, 1224
AfiI CCNNNNNNNGG 5 cut(s) 641, 652, 992, 1283, 1305
AgsI TTSAA 7 cut(s) 119, 179, 301, 782, 880, 1179, 1200
AjnI CCWGG 1 cut(s) 429
AjuI GAANNNNNNNTTGG 2 cut(s) 619, 651
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
Alw26I GTCTC 1 cut(s) 931
AlwI GGATC 3 cut(s) 12, 61, 831
Ama87I CYCGRG 1 cut(s) 1359
AoxI GGCC 2 cut(s) 643, 1285
ApeKI GCWGC 1 cut(s) 1364
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
Asp700I GAANNNNTTC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 656
AspLEI GCGC 1 cut(s) 1369
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 4 cut(s) 74, 236, 253, 1408
AvaI CYCGRG 1 cut(s) 1359
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 905
BauI CACGAG 1 cut(s) 1383
BbsI GAAGAC 2 cut(s) 623, 789
BbvI GCAGC 1 cut(s) 1351
BccI CCATC 1 cut(s) 400
BceAI ACGGC 2 cut(s) 1272, 1354
BcgI CGANNNNNNTGC 4 cut(s) 629, 663, 992, 1026
BciT130I CCWGG 1 cut(s) 431
BciVI GTATCC 2 cut(s) 894, 1126
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 931
BfaI CTAG 7 cut(s) 74, 132, 912, 1047, 1092, 1263, 1335
BfmI CTRYAG 2 cut(s) 499, 708
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 2 cut(s) 894, 1126
BglII AGATCT 1 cut(s) 472
BisI GCNGC 1 cut(s) 1365
BlsI GCNGC 1 cut(s) 1366
Bme1390I CCNGG 2 cut(s) 365, 431
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 1359
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 3 cut(s) 258, 658, 904
BmrFI CCNGG 2 cut(s) 365, 431
BmsI GCATC 1 cut(s) 1130
BpiI GAAGAC 2 cut(s) 623, 789
BplI GAGNNNNNCTC 4 cut(s) 1244, 1276, 1366, 1398
BpmI CTGGAG 5 cut(s) 114, 889, 939, 1014, 1382
Bpu10I CCTNAGC 1 cut(s) 1060
BpuMI CCSGG 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 1087
BsaAI YACGTR 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 931
BsaJI CCNNGG 2 cut(s) 364, 635
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 5 cut(s) 641, 652, 992, 1283, 1305
Bse1I ACTGG 4 cut(s) 97, 193, 526, 956
Bse3DI GCAATG 2 cut(s) 770, 1288
BseBI CCWGG 1 cut(s) 431
BseCI ATCGAT 1 cut(s) 1087
BseDI CCNNGG 2 cut(s) 364, 635
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 5 cut(s) 641, 652, 992, 1283, 1305
BseMI GCAATG 2 cut(s) 770, 1288
BseMII CTCAG 7 cut(s) 729, 926, 1038, 1074, 1119, 1316, 1325
BseNI ACTGG 4 cut(s) 97, 193, 526, 956
BseXI GCAGC 1 cut(s) 1351
BseYI CCCAGC 1 cut(s) 998
BshFI GGCC 2 cut(s) 645, 1287
BshNI GGYRCC 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 1087
BsiHKCI CYCGRG 1 cut(s) 1359
BsiSI CCGG 1 cut(s) 364
BsiWI CGTACG 1 cut(s) 1222
BslFI GGGAC 3 cut(s) 593, 1259, 1304
BslI CCNNNNNNNGG 5 cut(s) 641, 652, 992, 1283, 1305
BsmAI GTCTC 1 cut(s) 931
BsmFI GGGAC 3 cut(s) 593, 1259, 1304
BsnI GGCC 2 cut(s) 645, 1287
Bso31I GGTCTC 1 cut(s) 931
BsoBI CYCGRG 1 cut(s) 1359
Bsp1286I GDGCHC 1 cut(s) 905
Bsp1407I TGTACA 2 cut(s) 85, 435
BspACI CCGC 5 cut(s) 653, 775, 1068, 1258, 1299
BspANI GGCC 2 cut(s) 645, 1287
BspCNI CTCAG 7 cut(s) 730, 927, 1037, 1073, 1118, 1315, 1324
BspDI ATCGAT 1 cut(s) 1087
BspLI GGNNCC 3 cut(s) 258, 658, 904
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 3 cut(s) 12, 61, 831
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 931
BsrBI CCGCTC 2 cut(s) 1260, 1301
BsrDI GCAATG 2 cut(s) 770, 1288
BsrGI TGTACA 2 cut(s) 85, 435
BsrI ACTGG 4 cut(s) 97, 193, 526, 956
BssECI CCNNGG 2 cut(s) 364, 635
BssSI CACGAG 1 cut(s) 1383
BssT1I CCWWGG 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 1383
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 5 cut(s) 236, 313, 891, 1010, 1341
Bst6I CTCTTC 1 cut(s) 1180
BstAUI TGTACA 2 cut(s) 85, 435
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 7 cut(s) 738, 935, 1024, 1060, 1105, 1302, 1311
BstENI CCTNNNNNAGG 1 cut(s) 639
BstF5I GGATG 1 cut(s) 136
BstHHI GCGC 1 cut(s) 1369
BstMAI GTCTC 1 cut(s) 931
BstMWI GCNNNNNNNGC 4 cut(s) 169, 536, 1037, 1065
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 363, 429
BstSFI CTRYAG 2 cut(s) 499, 708
BstV1I GCAGC 1 cut(s) 1351
BstV2I GAAGAC 2 cut(s) 623, 789
BstX2I RGATCY 2 cut(s) 472, 823
BstYI RGATCY 2 cut(s) 472, 823
Bsu15I ATCGAT 1 cut(s) 1087
BsuI GTATCC 2 cut(s) 894, 1126
BsuRI GGCC 2 cut(s) 645, 1287
BsuTUI ATCGAT 1 cut(s) 1087
BtsCI GGATG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 1369
Cfr13I GGNCC 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 1087
CseI GACGC 1 cut(s) 426
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 7 cut(s) 86, 436, 657, 764, 959, 1076, 1223
CviAII CATG 1 cut(s) 359
CviQI GTAC 7 cut(s) 86, 436, 657, 764, 959, 1076, 1223
DdeI CTNAG 7 cut(s) 738, 935, 1024, 1060, 1105, 1302, 1311
EaeI YGGCCR 1 cut(s) 1285
Eam1104I CTCTTC 1 cut(s) 1180
EarI CTCTTC 1 cut(s) 1180
Eco130I CCWWGG 1 cut(s) 635
Eco147I AGGCCT 1 cut(s) 645
Eco24I GRGCYC 1 cut(s) 905
Eco31I GGTCTC 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 2 cut(s) 972, 1221
Eco88I CYCGRG 1 cut(s) 1359
EcoNI CCTNNNNNAGG 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 635
EcoT22I ATGCAT 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 905
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 1 cut(s) 362
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FaqI GGGAC 3 cut(s) 593, 1259, 1304
FatI CATG 1 cut(s) 358
FauI CCCGC 1 cut(s) 646
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 1365
FokI GGATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 905
Fsp4HI GCNGC 1 cut(s) 1365
FspBI CTAG 7 cut(s) 74, 132, 912, 1047, 1092, 1263, 1335
GlaI GCGC 1 cut(s) 1368
GluI GCNGC 1 cut(s) 1365
GsaI CCCAGC 1 cut(s) 1002
GsuI CTGGAG 5 cut(s) 114, 889, 939, 1014, 1382
HaeIII GGCC 2 cut(s) 645, 1287
HapII CCGG 1 cut(s) 364
HgaI GACGC 1 cut(s) 426
HhaI GCGC 1 cut(s) 1369
Hin1II CATG 1 cut(s) 362
Hin6I GCGC 1 cut(s) 1367
HinP1I GCGC 1 cut(s) 1367
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 3 cut(s) 29, 113, 161
HinfI GANTC 7 cut(s) 155, 514, 590, 949, 1020, 1158, 1309
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 1 cut(s) 364
HphI GGTGA 4 cut(s) 74, 236, 253, 1408
Hpy166II GTNNAC 5 cut(s) 41, 65, 436, 547, 744
Hpy188I TCNGA 4 cut(s) 261, 294, 1108, 1305
Hpy8I GTNNAC 5 cut(s) 41, 65, 436, 547, 744
Hpy99I CGWCG 1 cut(s) 1375
HpyAV CCTTC 3 cut(s) 656, 833, 996
HpyCH4III ACNGT 5 cut(s) 236, 313, 891, 1010, 1341
HpyCH4IV ACGT 2 cut(s) 37, 603
HpyCH4V TGCA 3 cut(s) 358, 458, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 536, 1037, 1065
HpyF3I CTNAG 7 cut(s) 738, 935, 1024, 1060, 1105, 1302, 1311
HpySE526I ACGT 2 cut(s) 37, 603
Hsp92II CATG 1 cut(s) 362
HspAI GCGC 1 cut(s) 1367
KpnI GGTACC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 336
KspAI GTTAAC 1 cut(s) 547
LmnI GCTCC 4 cut(s) 908, 920, 995, 1401
Lsp1109I GCAGC 1 cut(s) 1351
LweI GCATC 1 cut(s) 1130
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 7 cut(s) 74, 132, 912, 1047, 1092, 1263, 1335
MaeII ACGT 2 cut(s) 37, 603
MaeIII GTNAC 2 cut(s) 380, 1385
MbiI CCGCTC 2 cut(s) 1260, 1301
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 1 cut(s) 905
MluCI AATT 3 cut(s) 280, 561, 963
MlyI GAGTC 2 cut(s) 1167, 1303
MmeI TCCRAC 1 cut(s) 272
Mph1103I ATGCAT 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 3 cut(s) 81, 279, 546
MspA1I CMGCKG 2 cut(s) 992, 1241
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 2 cut(s) 365, 431
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 4 cut(s) 169, 536, 1037, 1065
NciI CCSGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 1042
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 3 cut(s) 258, 658, 904
NmuCI GTSAC 2 cut(s) 380, 1385
NsiI ATGCAT 1 cut(s) 360
NspI RCATGY 1 cut(s) 362
PceI AGGCCT 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 5 cut(s) 155, 514, 590, 949, 1020
Pfl23II CGTACG 1 cut(s) 1222
PflMI CCANNNNNTGG 1 cut(s) 1283
PkrI GCNGC 1 cut(s) 1366
PleI GAGTC 2 cut(s) 1166, 1303
PpsI GAGTC 2 cut(s) 1166, 1303
Ppu21I YACGTR 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 998
PspGI CCWGG 1 cut(s) 429
PspLI CGTACG 1 cut(s) 1222
PspN4I GGNNCC 3 cut(s) 258, 658, 904
PspPI GGNCC 1 cut(s) 257
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
PsuI RGATCY 2 cut(s) 472, 823
PvuII CAGCTG 2 cut(s) 992, 1241
RsaI GTAC 7 cut(s) 87, 437, 658, 765, 960, 1077, 1224
RsaNI GTAC 7 cut(s) 86, 436, 657, 764, 959, 1076, 1223
SaqAI TTAA 3 cut(s) 81, 279, 546
SatI GCNGC 1 cut(s) 1365
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 2 cut(s) 1167, 1303
ScrFI CCNGG 2 cut(s) 365, 431
SduI GDGCHC 1 cut(s) 905
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 1 cut(s) 1130
SfcI CTRYAG 2 cut(s) 499, 708
SinI GGWCC 1 cut(s) 257
Sse9I AATT 3 cut(s) 280, 561, 963
SseBI AGGCCT 1 cut(s) 645
SsiI CCGC 5 cut(s) 653, 775, 1068, 1258, 1299
SspMI CTAG 7 cut(s) 74, 132, 912, 1047, 1092, 1263, 1335
StuI AGGCCT 1 cut(s) 645
StyD4I CCNGG 2 cut(s) 363, 429
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 5 cut(s) 236, 313, 891, 1010, 1341
TaiI ACGT 2 cut(s) 40, 606
TaqI TCGA 8 cut(s) 532, 622, 835, 1012, 1087, 1161, 1217, 1373
TasI AATT 3 cut(s) 280, 561, 963
TatI WGTACW 2 cut(s) 85, 435
TfiI GAWTC 5 cut(s) 155, 514, 590, 949, 1020
Tru1I TTAA 3 cut(s) 81, 279, 546
Tru9I TTAA 3 cut(s) 81, 279, 546
TseFI GTSAC 2 cut(s) 380, 1385
TseI GCWGC 1 cut(s) 1364
Tsp45I GTSAC 2 cut(s) 380, 1385
TspDTI ATGAA 4 cut(s) 137, 168, 365, 962
TspGWI ACGGA 1 cut(s) 465
Van91I CCANNNNNTGG 1 cut(s) 1283
VpaK11BI GGWCC 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 639
XbaI TCTAGA 1 cut(s) 1091
XceI RCATGY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 7 cut(s) 74, 132, 912, 1047, 1092, 1263, 1335
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.