FvH4_4g03850
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
3374166 .. 3380658
6493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03850.t1

Sequence Viewer

Length: 1377 bp
ATGGAGCATGTTATTGGAGGCAAGTTTAAGCTGGGGAGGAAGATCGGCAGTGGATCGTTCGGAGAGCTTTATTTGGGGATCAATGTGCAAACTGGGGAGGAGGTGGCTGTGAAGCTGGAATCTGTTAAGACAAAACACCCTCAGCTTCACTATGAGTCAAAGTTGTACATGCTTCTTCAAGGAGGAACGGGTGTACCCCATCTCAAATGGTTCGGAGTTGAGGGTGAATATAATGTCATGGTTATTGACCTTCTTGGCCCAAGCCTAGAAGACTTGTTCAACTATTGCAACCGGAAGTTCTCTTTGAAGACGGTTTTAATGCTTGCAGATCAATTAATAAATCGAGTGGAGTACATGCACTCGCGGGGATTTCTTCACCGTGACATAAAGCCTGACAACTTCTTAATGGGTCTTGGGCGTAAAGCTAATCAGGTATATATCATTGATTATGGCCTCGCGAAAAAGTATAGAGATCTTCAAACGCATAAGCACATACCATACAGGGAAAATAAGAATCTGACAGGAACAGCTCGCTATGCAAGTGTTAACACTCACCTTGGTGTTGAGCAAAGCAGGAGAGATGATCTGGAATCTCTGGGTTATGTGCTTATGTATTTTCTTAGGGGAAGCCTTCCCTGGCAGGGGTTGAAAGCAGGTACCAAAAAACAGAAATATGACAAGATCAGTGAAAAGAAGATGCTTACTCCAATTGAGGGTCTGTGTAAATCGTATCCATCAGAGTTCACTTCATATTTCCATTACTGCCGCTCATTACGCTTTGAAGATAAACCAGACTATTCATACCTGAAGAGACTTTTCCGAGATCTTTTTATTCGAGAAGGTTATCAATTTGACTATGTATTTGATTGGACAATACTGAAGTATCCACAAATTGGCTCCAGTTCTAGAGCAAGAACAAGTGCAAAACCAGCTTTGAGTCCTGGACCATCTGCAGAAAGAACAGAAAGGCGTTCAGAGAGAGACGAGTTTCGAGAGAGACTCTCAGGTGCAGTTGAAGCATTTTCTAGAAGGAATGGTTCTGGGCAGGGTGACAACTCCAGACTTAAATCAGTTGAAGATGCGCCATCATCCAAAGATGTGCATCATGATTCAGAAAGAACCCGGAGTTCATCTAGAAATGGCAGCACCTCAAAGAGGCCTGTCATATCAAGCAGTAGGCCAAGCTCCTCTGGTGAGCCTAGCGAGAGCAGGTCAAGCCGGCTGATCTCGAGCAGTGGTCGCCTGTCAACCACCCAAAGGACACCTGGGTATGAATCGAAAGTGTCTTATACTCGTACTTCAGCTGCAAGAGGCGGTCGTGATGATGCACTTAGGAGCTTTGAGCTCCTTTCTATTGGTACGGGGAAGAGGAAATAA

Protein Analysis

459

Amino Acids

52.06

Weight (kDa)

9.73

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 227 4.9e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 270 6.4e-15 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 117 - 206 1.8e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 644, 1200
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 656
AccB7I CCANNNNNTGG 1 cut(s) 893
AccBSI CCGCTC 1 cut(s) 768
AccII CGCG 2 cut(s) 364, 458
AciI CCGC 3 cut(s) 364, 766, 1314
AclWI GGATC 2 cut(s) 61, 86
AcuI CTGAAG 3 cut(s) 827, 899, 1284
AfaI GTAC 6 cut(s) 167, 195, 353, 658, 1297, 1360
AfiI CCNNNNNNNGG 6 cut(s) 641, 642, 713, 893, 1155, 1257
AgsI TTSAA 8 cut(s) 179, 280, 307, 479, 649, 782, 1016, 1076
AjnI CCWGG 3 cut(s) 635, 940, 1264
AleI CACNNNNGTG 1 cut(s) 558
Alw21I GWGCWC 1 cut(s) 1347
Alw26I GTCTC 3 cut(s) 805, 975, 991
AlwI GGATC 2 cut(s) 61, 86
Ama87I CYCGRG 1 cut(s) 1228
AoxI GGCC 4 cut(s) 256, 451, 1157, 1178
ApeKI GCWGC 2 cut(s) 1143, 1304
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
AseI ATTAAT 1 cut(s) 335
Asp718I GGTACC 1 cut(s) 656
AspLEI GCGC 1 cut(s) 1084
AspS9I GGNCC 2 cut(s) 257, 944
AsuC2I CCSGG 1 cut(s) 1123
AsuHPI GGTGA 5 cut(s) 236, 368, 545, 1061, 1205
AvaI CYCGRG 1 cut(s) 1228
AvaII GGWCC 1 cut(s) 944
BaeI ACNNNNGTAYC 4 cut(s) 177, 210, 866, 899
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 1347
BbsI GAAGAC 2 cut(s) 276, 314
Bbv12I GWGCWC 1 cut(s) 1347
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 1155, 1291
BccI CCATC 4 cut(s) 207, 742, 955, 1093
BciT130I CCWGG 3 cut(s) 637, 942, 1266
BciVI GTATCC 2 cut(s) 741, 894
BcnI CCSGG 1 cut(s) 1123
BcoDI GTCTC 3 cut(s) 805, 975, 991
BfaI CTAG 5 cut(s) 266, 906, 1026, 1134, 1200
BfmI CTRYAG 1 cut(s) 951
BfuAI ACCTGC 2 cut(s) 644, 1200
BfuI GTATCC 2 cut(s) 741, 894
BglII AGATCT 2 cut(s) 472, 823
BisI GCNGC 3 cut(s) 766, 1144, 1305
BlsI GCNGC 3 cut(s) 767, 1145, 1306
Bme1390I CCNGG 4 cut(s) 637, 942, 1123, 1266
Bme18I GGWCC 1 cut(s) 944
BmeT110I CYCGRG 1 cut(s) 1228
BmgT120I GGNCC 2 cut(s) 257, 944
BmiI GGNNCC 2 cut(s) 658, 898
BmrFI CCNGG 4 cut(s) 637, 942, 1123, 1266
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 4 cut(s) 687, 1069, 1111, 1315
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 2 cut(s) 276, 314
BplI GAGNNNNNCTC 4 cut(s) 984, 1016, 986, 1018
BpmI CTGGAG 2 cut(s) 883, 1042
Bpu10I CCTNAGC 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 1123
BsaBI GATNNNNATC 1 cut(s) 1101
BsaJI CCNNGG 3 cut(s) 556, 635, 1265
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 6 cut(s) 641, 642, 713, 893, 1155, 1257
Bse118I RCCGGY 1 cut(s) 1218
Bse1I ACTGG 2 cut(s) 97, 900
Bse8I GATNNNNATC 1 cut(s) 1101
BseBI CCWGG 3 cut(s) 637, 942, 1266
BseDI CCNNGG 3 cut(s) 556, 635, 1265
BseGI GGATG 1 cut(s) 1088
BseJI GATNNNNATC 1 cut(s) 1101
BseLI CCNNNNNNNGG 6 cut(s) 641, 642, 713, 893, 1155, 1257
BseMII CTCAG 2 cut(s) 155, 1017
BseNI ACTGG 2 cut(s) 97, 900
BseRI GAGGAG 2 cut(s) 113, 1177
BseXI GCAGC 2 cut(s) 1155, 1291
BseYI CCCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 1029
Bsh1236I CGCG 2 cut(s) 364, 458
Bsh1285I CGRYCG 1 cut(s) 1318
BshFI GGCC 4 cut(s) 258, 453, 1159, 1180
BshNI GGYRCC 1 cut(s) 656
BsiEI CGRYCG 1 cut(s) 1318
BsiHKAI GWGCWC 1 cut(s) 1347
BsiHKCI CYCGRG 1 cut(s) 1228
BsiSI CCGG 3 cut(s) 292, 1123, 1219
BslI CCNNNNNNNGG 6 cut(s) 641, 642, 713, 893, 1155, 1257
BsmAI GTCTC 3 cut(s) 805, 975, 991
BsmBI CGTCTC 1 cut(s) 975
BsnI GGCC 4 cut(s) 258, 453, 1159, 1180
BsoBI CYCGRG 1 cut(s) 1228
Bsp1286I GDGCHC 1 cut(s) 1347
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
Bsp68I TCGCGA 1 cut(s) 458
BspACI CCGC 3 cut(s) 364, 766, 1314
BspANI GGCC 4 cut(s) 258, 453, 1159, 1180
BspCNI CTCAG 2 cut(s) 154, 1016
BspFNI CGCG 2 cut(s) 364, 458
BspHI TCATGA 1 cut(s) 1105
BspLI GGNNCC 2 cut(s) 658, 898
BspMAI CTGCAG 1 cut(s) 955
BspMI ACCTGC 2 cut(s) 644, 1200
BspPI GGATC 2 cut(s) 61, 86
BspT107I GGYRCC 1 cut(s) 656
BsrBI CCGCTC 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 1218
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 97, 900
BssAI RCCGGY 1 cut(s) 1218
BssECI CCNNGG 3 cut(s) 556, 635, 1265
BssMI GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 3 cut(s) 637, 942, 1266
Bst4CI ACNGT 2 cut(s) 313, 380
Bst6I CTCTTC 2 cut(s) 803, 1361
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 324, 532, 1220
BstDEI CTNAG 4 cut(s) 141, 620, 1003, 1331
BstENI CCTNNNNNAGG 1 cut(s) 1153
BstF5I GGATG 1 cut(s) 1088
BstFNI CGCG 2 cut(s) 364, 458
BstHHI GCGC 1 cut(s) 1084
BstKTI GATC 9 cut(s) 45, 56, 81, 331, 475, 586, 684, 826, 1227
BstMAI GTCTC 3 cut(s) 805, 975, 991
BstMBI GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
BstMCI CGRYCG 1 cut(s) 1318
BstMWI GCNNNNNNNGC 6 cut(s) 536, 774, 929, 1016, 1215, 1239
BstNI CCWGG 3 cut(s) 637, 942, 1266
BstNSI RCATGY 3 cut(s) 11, 172, 358
BstSCI CCNGG 4 cut(s) 635, 940, 1121, 1264
BstSFI CTRYAG 1 cut(s) 951
BstUI CGCG 2 cut(s) 364, 458
BstV1I GCAGC 2 cut(s) 1155, 1291
BstV2I GAAGAC 2 cut(s) 276, 314
BstX2I RGATCY 2 cut(s) 472, 823
BstYI RGATCY 2 cut(s) 472, 823
BsuI GTATCC 2 cut(s) 741, 894
BsuRI GGCC 4 cut(s) 258, 453, 1159, 1180
BtsCI GGATG 1 cut(s) 1088
BtsI GCAGTG 2 cut(s) 55, 1240
BtsIMutI CAGTG 3 cut(s) 55, 691, 1240
BtuMI TCGCGA 1 cut(s) 458
BveI ACCTGC 2 cut(s) 644, 1200
Cac8I GCNNGC 3 cut(s) 324, 532, 1220
CciI TCATGA 1 cut(s) 1105
CfoI GCGC 1 cut(s) 1084
Cfr10I RCCGGY 1 cut(s) 1218
Cfr13I GGNCC 2 cut(s) 257, 944
Csp6I GTAC 6 cut(s) 166, 194, 352, 657, 1296, 1359
CviAII CATG 5 cut(s) 8, 169, 238, 355, 1106
CviQI GTAC 6 cut(s) 166, 194, 352, 657, 1296, 1359
DdeI CTNAG 4 cut(s) 141, 620, 1003, 1331
DpnI GATC 9 cut(s) 44, 55, 80, 330, 474, 585, 683, 825, 1226
DpnII GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
Eam1104I CTCTTC 2 cut(s) 803, 1361
EarI CTCTTC 2 cut(s) 803, 1361
Ecl136II GAGCTC 1 cut(s) 1345
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 1159
Eco24I GRGCYC 1 cut(s) 1347
Eco47I GGWCC 1 cut(s) 944
Eco53kI GAGCTC 1 cut(s) 1345
Eco57I CTGAAG 3 cut(s) 827, 899, 1284
Eco88I CYCGRG 1 cut(s) 1228
EcoICRI GAGCTC 1 cut(s) 1345
EcoNI CCTNNNNNAGG 1 cut(s) 1153
EcoRII CCWGG 3 cut(s) 635, 940, 1264
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 1347
ErhI CCWWGG 1 cut(s) 556
Esp3I CGTCTC 1 cut(s) 975
FaeI CATG 5 cut(s) 11, 172, 241, 358, 1109
FatI CATG 5 cut(s) 7, 168, 237, 354, 1105
FauI CCCGC 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 766, 1144, 1305
FokI GGATG 1 cut(s) 1075
FriOI GRGCYC 1 cut(s) 1347
Fsp4HI GCNGC 3 cut(s) 766, 1144, 1305
FspBI CTAG 5 cut(s) 266, 906, 1026, 1134, 1200
GlaI GCGC 1 cut(s) 1083
GluI GCNGC 3 cut(s) 766, 1144, 1305
GsaI CCCAGC 1 cut(s) 35
GsuI CTGGAG 2 cut(s) 883, 1042
HaeIII GGCC 4 cut(s) 258, 453, 1159, 1180
HapII CCGG 3 cut(s) 292, 1123, 1219
HhaI GCGC 1 cut(s) 1084
Hin1II CATG 5 cut(s) 11, 172, 241, 358, 1109
Hin6I GCGC 1 cut(s) 1082
HinP1I GCGC 1 cut(s) 1082
HincII GTYRAC 2 cut(s) 547, 1248
HindII GTYRAC 2 cut(s) 547, 1248
HinfI GANTC 8 cut(s) 119, 155, 514, 590, 937, 999, 1109, 1274
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 3 cut(s) 292, 1123, 1219
HphI GGTGA 5 cut(s) 236, 368, 545, 1061, 1205
Hpy166II GTNNAC 4 cut(s) 194, 547, 744, 1248
Hpy188I TCNGA 7 cut(s) 62, 215, 519, 739, 821, 976, 1114
Hpy8I GTNNAC 4 cut(s) 194, 547, 744, 1248
HpyAV CCTTC 4 cut(s) 260, 641, 833, 1023
HpyCH4III ACNGT 2 cut(s) 313, 380
HpyF10VI GCNNNNNNNGC 6 cut(s) 536, 774, 929, 1016, 1215, 1239
HpyF3I CTNAG 4 cut(s) 141, 620, 1003, 1331
Hsp92II CATG 5 cut(s) 11, 172, 241, 358, 1109
HspAI GCGC 1 cut(s) 1082
KpnI GGTACC 1 cut(s) 660
KroI GCCGGC 1 cut(s) 1218
KroNI GCCGGC 1 cut(s) 1220
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
LmnI GCTCC 5 cut(s) 4, 902, 1190, 1335, 1350
Lsp1109I GCAGC 2 cut(s) 1155, 1291
LweI GCATC 4 cut(s) 687, 1069, 1111, 1315
MaeI CTAG 5 cut(s) 266, 906, 1026, 1134, 1200
MaeIII GTNAC 2 cut(s) 380, 1049
MalI GATC 9 cut(s) 44, 55, 80, 330, 474, 585, 683, 825, 1226
MbiI CCGCTC 1 cut(s) 768
MboI GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 472, 823
MhlI GDGCHC 1 cut(s) 1347
MluCI AATT 4 cut(s) 332, 708, 848, 891
MlyI GAGTC 3 cut(s) 164, 946, 993
MroNI GCCGGC 1 cut(s) 1218
MseI TTAA 7 cut(s) 27, 126, 317, 335, 404, 546, 1065
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 1304
MspI CCGG 3 cut(s) 292, 1123, 1219
MspR9I CCNGG 4 cut(s) 637, 942, 1123, 1266
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 3 cut(s) 637, 942, 1266
MvnI CGCG 2 cut(s) 364, 458
MwoI GCNNNNNNNGC 6 cut(s) 536, 774, 929, 1016, 1215, 1239
NaeI GCCGGC 1 cut(s) 1220
NciI CCSGG 1 cut(s) 1123
NdeII GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
NgoMIV GCCGGC 1 cut(s) 1218
NlaIII CATG 5 cut(s) 11, 172, 241, 358, 1109
NlaIV GGNNCC 2 cut(s) 658, 898
NmuCI GTSAC 2 cut(s) 380, 1049
NruI TCGCGA 1 cut(s) 458
NspI RCATGY 3 cut(s) 11, 172, 358
OliI CACNNNNGTG 1 cut(s) 558
PaeR7I CTCGAG 1 cut(s) 1228
PagI TCATGA 1 cut(s) 1105
PceI AGGCCT 1 cut(s) 1159
PdiI GCCGGC 1 cut(s) 1220
PfeI GAWTC 5 cut(s) 119, 514, 590, 1109, 1274
PflMI CCANNNNNTGG 1 cut(s) 893
PfoI TCCNGGA 1 cut(s) 940
PkrI GCNGC 3 cut(s) 767, 1145, 1306
PleI GAGTC 3 cut(s) 163, 945, 993
PpsI GAGTC 3 cut(s) 163, 945, 993
PshBI ATTAAT 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 1347
Psp6I CCWGG 3 cut(s) 635, 940, 1264
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 3 cut(s) 635, 940, 1264
PspN4I GGNNCC 2 cut(s) 658, 898
PspPI GGNCC 2 cut(s) 257, 944
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 2 cut(s) 472, 823
PvuII CAGCTG 1 cut(s) 1304
RruI TCGCGA 1 cut(s) 458
RsaI GTAC 6 cut(s) 167, 195, 353, 658, 1297, 1360
RsaNI GTAC 6 cut(s) 166, 194, 352, 657, 1296, 1359
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 1 cut(s) 1347
SaqAI TTAA 7 cut(s) 27, 126, 317, 335, 404, 546, 1065
SatI GCNGC 3 cut(s) 766, 1144, 1305
Sau3AI GATC 9 cut(s) 42, 53, 78, 328, 472, 583, 681, 823, 1224
Sau96I GGNCC 2 cut(s) 257, 944
SchI GAGTC 3 cut(s) 164, 946, 993
ScrFI CCNGG 4 cut(s) 637, 942, 1123, 1266
SduI GDGCHC 1 cut(s) 1347
SfaNI GCATC 4 cut(s) 687, 1069, 1111, 1315
SfcI CTRYAG 1 cut(s) 951
Sfr274I CTCGAG 1 cut(s) 1228
SinI GGWCC 1 cut(s) 944
SlaI CTCGAG 1 cut(s) 1228
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 1228
SmoI CTYRAG 1 cut(s) 1228
Sse9I AATT 4 cut(s) 332, 708, 848, 891
SseBI AGGCCT 1 cut(s) 1159
SsiI CCGC 3 cut(s) 364, 766, 1314
SspMI CTAG 5 cut(s) 266, 906, 1026, 1134, 1200
SstI GAGCTC 1 cut(s) 1347
StuI AGGCCT 1 cut(s) 1159
StyD4I CCNGG 4 cut(s) 635, 940, 1121, 1264
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 313, 380
TaqI TCGA 5 cut(s) 343, 835, 991, 1229, 1277
TasI AATT 4 cut(s) 332, 708, 848, 891
TatI WGTACW 2 cut(s) 165, 351
TauI GCSGC 1 cut(s) 768
TfiI GAWTC 5 cut(s) 119, 514, 590, 1109, 1274
Tru1I TTAA 7 cut(s) 27, 126, 317, 335, 404, 546, 1065
Tru9I TTAA 7 cut(s) 27, 126, 317, 335, 404, 546, 1065
TscAI CASTG 3 cut(s) 55, 691, 1240
TseFI GTSAC 2 cut(s) 380, 1049
TseI GCWGC 2 cut(s) 1143, 1304
Tsp45I GTSAC 2 cut(s) 380, 1049
TspDTI ATGAA 4 cut(s) 738, 789, 1119, 1287
TspRI CASTG 3 cut(s) 55, 691, 1240
Van91I CCANNNNNTGG 1 cut(s) 893
VpaK11BI GGWCC 1 cut(s) 944
VspI ATTAAT 1 cut(s) 335
XagI CCTNNNNNAGG 1 cut(s) 1153
XbaI TCTAGA 3 cut(s) 905, 1025, 1133
XceI RCATGY 3 cut(s) 11, 172, 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 1262
XhoI CTCGAG 1 cut(s) 1228
XspI CTAG 5 cut(s) 266, 906, 1026, 1134, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.