Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003715

Physical Location & Seq

Genomic Coordinates Forward (+)

15124835 .. 15126934

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18490.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTATTTTCTGAGGGGGAGCCTTCCCTGGCAGGGCTTGAAAGCAGGTACAAAAAAGCAAAAATATGACAAGATCAGTGAGAAGAAGATGCTAACTCCAATTGAGGTGCTCTGCAAATCATATCCTTCAGAATTCACGTCATACTTCCATTATTGTCGATCATTACGCTTTGAGGACAAACCAGATTATTCATACCTGAAGAGGCTTTTCCGGGACCTTTTTATTCGAGAAGGGTATCAATTTGACTATGTATTTGATTGGACAATACTGAAGTATCCGCAAATTGGCTCCAGTTCTAGAACACGACCAAGTACAAAACCAGTTTTAAACCCTGGACCATCTGCAGAAAGAACAGAAAGGCCTACAGCAGTGGCACAAGATTTTCGAGAAAAGTACTCAGGTGCAGTTGAGGCATTTTCTAGAAGGAATGGTTCTGGTTATGGCTATGGCGATCACTCCAGACATAGAGCAACTGATGATGCCCCGTCATCCAAGGACGTCCAAGCTGACTCCGAAAGGGCTCGTAGTTCATCTAGAAATGGCAGTACTTCAAAGAGGCCAGTTATATCAAGCAGCCGGCCAAGCTCATCTGGTGAGCCCAGCGAGAGTCGGTCAAGCCGGCTGGTCTCAAGTAGTGGCCGCCTGTCCACCACCCAAAGGGTTCAACCTGGGTACGAGTCCAAAACATCTTTCACCCGAACATCCATCGCAAGAGGCGGCCGTGATGATACACTAAGGAGCTTTGAACTCCTTTCAATCGGCACGGGAAAGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009850 GO:0009987 GO:0010033 GO:0010817 GO:0014070 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022622 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0098657 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

260

Amino Acids

29.34

Weight (kDa)

9.99

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04440 AT3G23340 AT3G23340 AT4G14340 AT4G14340 AT5G43320 AT5G43320 AT5G43320
fragaria_vesca	FvH4_4g03850
malus_domestica	MD16G1220600.v1.1
prunus_persica	Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1
pyrus_communis	pycom13g18870 pycom16g18480 pycom16g18490
rosa_chinensis	RchiOBHm_Chr3g0469871 RchiOBHm_Chr4g0393671 RchiOBHm_Chr5g0032091
rosa_laevigata	RLG00000009736
rosa_multiflora	Rmu_sc0010124.1_g000006
rosa_roxburghii	Rroxscaffold_5G00338860
rosa_rugosa	Rorug03G0371600.1 Rorug03G0371700.1
rosa_samantha	Rh2DG495000 Rh4AG048600 Rh4BG045000 Rh4CG051900 Rh4DG045700 Rh5AG368700
rosa_wichuraiana	Rw4G003860 Rw7G038450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	35
AciI	CCGC	3 cut(s)	278, 640, 717
AcoI	YGGCCR	3 cut(s)	578, 637, 718
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	3 cut(s)	111, 218, 290
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	5 cut(s)	49, 313, 395, 547, 674
AfiI	CCNNNNNNNGG	3 cut(s)	32, 284, 657
AgsI	TTSAA	5 cut(s)	40, 552, 665, 746, 756
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	3 cut(s)	26, 331, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	674, 706
AluBI	AGCT	3 cut(s)	506, 585, 741
AluI	AGCT	3 cut(s)	506, 585, 741
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	631
AoxI	GGCC	5 cut(s)	359, 557, 578, 637, 718
ApeKI	GCWGC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspS9I	GGNCC	2 cut(s)	214, 335
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	605, 685
AvaII	GGWCC	2 cut(s)	214, 335
BaeI	ACNNNNGTAYC	2 cut(s)	257, 290
BanII	GRGCYC	2 cut(s)	523, 600
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	2 cut(s)	346, 713
BceAI	ACGGC	1 cut(s)	705
BciT130I	CCWGG	3 cut(s)	28, 333, 669
BciVI	GTATCC	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	3 cut(s)	297, 420, 534
BfmI	CTRYAG	2 cut(s)	342, 363
BfuAI	ACCTGC	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	574, 640, 718
BlsI	GCNGC	3 cut(s)	575, 641, 719
BmcAI	AGTACT	2 cut(s)	395, 547
Bme1390I	CCNGG	4 cut(s)	28, 212, 333, 669
Bme18I	GGWCC	2 cut(s)	214, 335
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	214, 335
BmiI	GGNNCC	3 cut(s)	20, 215, 289
BmrFI	CCNGG	4 cut(s)	28, 212, 333, 669
BmsI	GCATC	2 cut(s)	78, 469
BpmI	CTGGAG	2 cut(s)	274, 442
BpuEI	CTTGAG	1 cut(s)	613
BpuMI	CCSGG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	631
BsaJI	CCNNGG	4 cut(s)	26, 331, 492, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 284, 657
Bse118I	RCCGGY	2 cut(s)	576, 618
Bse1I	ACTGG	3 cut(s)	291, 320, 560
BseBI	CCWGG	3 cut(s)	28, 333, 669
BseDI	CCNNGG	4 cut(s)	26, 331, 492, 668
BseGI	GGATG	2 cut(s)	488, 701
BseLI	CCNNNNNNNGG	3 cut(s)	32, 284, 657
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	291, 320, 560
BseX3I	CGGCCG	1 cut(s)	718
BseXI	GCAGC	1 cut(s)	585
BseYI	CCCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	721
BshFI	GGCC	5 cut(s)	361, 559, 580, 639, 720
BsiEI	CGRYCG	1 cut(s)	721
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	211, 577, 619
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	32, 284, 657
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	5 cut(s)	361, 559, 580, 639, 720
Bso31I	GGTCTC	1 cut(s)	631
Bsp1286I	GDGCHC	3 cut(s)	111, 523, 600
Bsp143I	GATC	3 cut(s)	72, 158, 451
BspACI	CCGC	3 cut(s)	278, 640, 717
BspANI	GGCC	5 cut(s)	361, 559, 580, 639, 720
BspCNI	CTCAG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	20, 215, 289
BspMAI	CTGCAG	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	631
BsrFI	RCCGGY	2 cut(s)	576, 618
BsrI	ACTGG	3 cut(s)	291, 320, 560
BssAI	RCCGGY	2 cut(s)	576, 618
BssECI	CCNNGG	4 cut(s)	26, 331, 492, 668
BssMI	GATC	3 cut(s)	72, 158, 451
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	3 cut(s)	28, 333, 669
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	578, 620
BstDEI	CTNAG	3 cut(s)	11, 397, 734
BstF5I	GGATG	2 cut(s)	488, 701
BstKTI	GATC	3 cut(s)	75, 161, 454
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	3 cut(s)	72, 158, 451
BstMCI	CGRYCG	1 cut(s)	721
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 582
BstNI	CCWGG	3 cut(s)	28, 333, 669
BstSCI	CCNGG	4 cut(s)	26, 210, 331, 667
BstSFI	CTRYAG	2 cut(s)	342, 363
BstV1I	GCAGC	1 cut(s)	585
BstZI	CGGCCG	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	361, 559, 580, 639, 720
BtgZI	GCGATG	1 cut(s)	691
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	488, 701
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	82, 375
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	578, 620
Cfr10I	RCCGGY	2 cut(s)	576, 618
Cfr13I	GGNCC	2 cut(s)	214, 335
Csp6I	GTAC	5 cut(s)	48, 312, 394, 546, 673
CviQI	GTAC	5 cut(s)	48, 312, 394, 546, 673
DdeI	CTNAG	3 cut(s)	11, 397, 734
DpnI	GATC	3 cut(s)	74, 160, 453
DpnII	GATC	3 cut(s)	72, 158, 451
DraI	TTTAAA	1 cut(s)	327
EaeI	YGGCCR	3 cut(s)	578, 637, 718
EagI	CGGCCG	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EclXI	CGGCCG	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	2 cut(s)	523, 600
Eco31I	GGTCTC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	214, 335
Eco52I	CGGCCG	1 cut(s)	718
Eco57I	CTGAAG	3 cut(s)	111, 218, 290
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	3 cut(s)	26, 331, 667
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	2 cut(s)	523, 600
ErhI	CCWWGG	1 cut(s)	492
FaiI	YATR	9 cut(s)	66, 121, 142, 193, 249, 441, 447, 465, 566
FaqI	GGGAC	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	574, 640, 718
FokI	GGATG	2 cut(s)	475, 688
FriOI	GRGCYC	2 cut(s)	523, 600
Fsp4HI	GCNGC	3 cut(s)	574, 640, 718
FspBI	CTAG	3 cut(s)	297, 420, 534
GluI	GCNGC	3 cut(s)	574, 640, 718
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	274, 442
HaeIII	GGCC	5 cut(s)	361, 559, 580, 639, 720
HapII	CCGG	3 cut(s)	211, 577, 619
Hin1I	GRCGYC	1 cut(s)	498
HinfI	GANTC	3 cut(s)	509, 607, 677
HpaII	CCGG	3 cut(s)	211, 577, 619
HphI	GGTGA	2 cut(s)	605, 685
Hpy166II	GTNNAC	1 cut(s)	648
Hpy188I	TCNGA	3 cut(s)	12, 130, 514
Hpy188III	TCNNGA	6 cut(s)	227, 297, 386, 420, 459, 534
Hpy8I	GTNNAC	1 cut(s)	648
HpyAV	CCTTC	4 cut(s)	32, 135, 224, 417
HpyCH4IV	ACGT	2 cut(s)	137, 498
HpyCH4V	TGCA	3 cut(s)	114, 344, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 582
HpyF3I	CTNAG	3 cut(s)	11, 397, 734
HpySE526I	ACGT	2 cut(s)	137, 498
Hsp92I	GRCGYC	1 cut(s)	498
KroI	GCCGGC	2 cut(s)	576, 618
KroNI	GCCGGC	2 cut(s)	578, 620
Kzo9I	GATC	3 cut(s)	72, 158, 451
LmnI	GCTCC	3 cut(s)	18, 293, 738
Lsp1109I	GCAGC	1 cut(s)	585
LweI	GCATC	2 cut(s)	78, 469
MaeI	CTAG	3 cut(s)	297, 420, 534
MaeII	ACGT	2 cut(s)	137, 498
MalI	GATC	3 cut(s)	74, 160, 453
MboI	GATC	3 cut(s)	72, 158, 451
MboII	GAAGA	3 cut(s)	94, 97, 211
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	3 cut(s)	111, 523, 600
MluCI	AATT	4 cut(s)	99, 131, 239, 282
MlyI	GAGTC	3 cut(s)	503, 616, 686
MnlI	CCTC	8 cut(s)	6, 97, 166, 195, 403, 549, 707, 765
MroNI	GCCGGC	2 cut(s)	576, 618
MseI	TTAA	1 cut(s)	326
MspI	CCGG	3 cut(s)	211, 577, 619
MspR9I	CCNGG	4 cut(s)	28, 212, 333, 669
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	3 cut(s)	28, 333, 669
MwoI	GCNNNNNNNGC	2 cut(s)	410, 582
NaeI	GCCGGC	2 cut(s)	578, 620
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	3 cut(s)	72, 158, 451
NgoMIV	GCCGGC	2 cut(s)	576, 618
NlaIV	GGNNCC	3 cut(s)	20, 215, 289
PceI	AGGCCT	1 cut(s)	361
PdiI	GCCGGC	2 cut(s)	578, 620
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	575, 641, 719
PleI	GAGTC	3 cut(s)	503, 615, 685
PpsI	GAGTC	3 cut(s)	503, 615, 685
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	3 cut(s)	26, 331, 667
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	26, 331, 667
PspN4I	GGNNCC	3 cut(s)	20, 215, 289
PspPI	GGNCC	2 cut(s)	214, 335
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	346
RsaI	GTAC	5 cut(s)	49, 313, 395, 547, 674
RsaNI	GTAC	5 cut(s)	48, 312, 394, 546, 673
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	3 cut(s)	574, 640, 718
Sau3AI	GATC	3 cut(s)	72, 158, 451
Sau96I	GGNCC	2 cut(s)	214, 335
ScaI	AGTACT	2 cut(s)	395, 547
SchI	GAGTC	3 cut(s)	503, 616, 686
ScrFI	CCNGG	4 cut(s)	28, 212, 333, 669
SduI	GDGCHC	3 cut(s)	111, 523, 600
SfaNI	GCATC	2 cut(s)	78, 469
SfcI	CTRYAG	2 cut(s)	342, 363
SinI	GGWCC	2 cut(s)	214, 335
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	4 cut(s)	99, 131, 239, 282
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	3 cut(s)	278, 640, 717
SspMI	CTAG	3 cut(s)	297, 420, 534
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	4 cut(s)	26, 210, 331, 667
StyI	CCWWGG	1 cut(s)	492
TaiI	ACGT	2 cut(s)	140, 501
TaqI	TCGA	3 cut(s)	157, 226, 385
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	4 cut(s)	99, 131, 239, 282
TatI	WGTACW	3 cut(s)	311, 393, 545
TauI	GCSGC	2 cut(s)	642, 720
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	82, 375
TseI	GCWGC	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	180, 519
TspRI	CASTG	2 cut(s)	82, 375
VpaK11BI	GGWCC	2 cut(s)	214, 335
XapI	RAATTY	1 cut(s)	131
XbaI	TCTAGA	3 cut(s)	296, 419, 533
XspI	CTAG	3 cut(s)	297, 420, 534
ZraI	GACGTC	1 cut(s)	499
ZrmI	AGTACT	2 cut(s)	395, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.