Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003715

Physical Location & Seq

Genomic Coordinates Forward (+)

71510847 .. 71512628

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG495000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCTTCTTCAAGGAGGAACGGGTGTACCCCATCTTAAATGGTTCGGAGTTGAGGGTGAATATAATGTCATGGTTATCGACCTTCTTGGCCCAAGCCTAGAAGACTTGTTCAACTATTGCAATCGGAAGTTCACTTTGAAGACAGTTTTAATGCTTGCAGATCAATTAATTAACCGAGTGGAGTACATGCACTCACGGGGATTTCTTCACCGTGACATAAAGCCTGACAACTTCTTAATGGGTCTGGGGCGTAAAGCTAATCAGGTGTATATCATTGATTATGGCCTTGCAAAAAAGTATAGAGATCTTCAAACGCATAAGCACATACCATATAGAGCAAAGCAGGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009850 GO:0009987 GO:0010033 GO:0010817 GO:0014070 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022622 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0098657 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

117

Amino Acids

13.71

Weight (kDa)

9.41

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	21 - 102	4.7e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	23 - 104	7.2e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04440 AT3G23340 AT3G23340 AT4G14340 AT4G14340 AT5G43320 AT5G43320 AT5G43320
fragaria_vesca	FvH4_4g03850
malus_domestica	MD16G1220600.v1.1
prunus_persica	Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1 Prupe.1G040700_v2.0.a1
pyrus_communis	pycom13g18870 pycom16g18480 pycom16g18490
rosa_chinensis	RchiOBHm_Chr3g0469871 RchiOBHm_Chr4g0393671 RchiOBHm_Chr5g0032091
rosa_laevigata	RLG00000009736
rosa_multiflora	Rmu_sc0010124.1_g000006
rosa_roxburghii	Rroxscaffold_5G00338860
rosa_rugosa	Rorug03G0371600.1 Rorug03G0371700.1
rosa_samantha	Rh2DG495000 Rh4AG048600 Rh4BG045000 Rh4CG051900 Rh4DG045700 Rh5AG368700
rosa_wichuraiana	Rw4G003860 Rw7G038450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	27, 185
AgsI	TTSAA	4 cut(s)	11, 112, 139, 311
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
AoxI	GGCC	2 cut(s)	88, 283
AseI	ATTAAT	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	68, 200
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
BbsI	GAAGAC	2 cut(s)	108, 146
BccI	CCATC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	89
BpiI	GAAGAC	2 cut(s)	108, 146
BshFI	GGCC	2 cut(s)	90, 285
BsnI	GGCC	2 cut(s)	90, 285
Bsp143I	GATC	2 cut(s)	160, 304
BspANI	GGCC	2 cut(s)	90, 285
BssMI	GATC	2 cut(s)	160, 304
Bst4CI	ACNGT	2 cut(s)	145, 212
BstC8I	GCNNGC	1 cut(s)	156
BstKTI	GATC	2 cut(s)	163, 307
BstMBI	GATC	2 cut(s)	160, 304
BstNSI	RCATGY	1 cut(s)	190
BstV2I	GAAGAC	2 cut(s)	108, 146
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	90, 285
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	26, 184
CviAII	CATG	2 cut(s)	70, 187
CviJI	RGCY	5 cut(s)	90, 96, 223, 257, 285
CviKI_1	RGCY	5 cut(s)	90, 96, 223, 257, 285
CviQI	GTAC	2 cut(s)	26, 184
DpnI	GATC	2 cut(s)	162, 306
DpnII	GATC	2 cut(s)	160, 304
FaeI	CATG	2 cut(s)	73, 190
FatI	CATG	2 cut(s)	69, 186
FspBI	CTAG	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	90, 285
Hin1II	CATG	2 cut(s)	73, 190
HphI	GGTGA	2 cut(s)	68, 200
Hpy166II	GTNNAC	2 cut(s)	26, 132
Hpy188I	TCNGA	2 cut(s)	47, 126
Hpy8I	GTNNAC	2 cut(s)	26, 132
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	2 cut(s)	145, 212
HpyCH4V	TGCA	4 cut(s)	120, 158, 190, 290
Hsp92II	CATG	2 cut(s)	73, 190
Kzo9I	GATC	2 cut(s)	160, 304
LpnPI	CCDG	4 cut(s)	230, 237, 248, 329
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	162, 306
MboI	GATC	2 cut(s)	160, 304
MboII	GAAGA	4 cut(s)	113, 151, 197, 299
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	2 cut(s)	164, 168
MnlI	CCTC	2 cut(s)	8, 46
MseI	TTAA	5 cut(s)	36, 149, 167, 171, 236
NdeII	GATC	2 cut(s)	160, 304
NlaIII	CATG	2 cut(s)	73, 190
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	190
PacI	TTAATTAA	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	27, 185
RsaNI	GTAC	2 cut(s)	26, 184
SaqAI	TTAA	5 cut(s)	36, 149, 167, 171, 236
Sau3AI	GATC	2 cut(s)	160, 304
Sau96I	GGNCC	1 cut(s)	89
SetI	ASST	3 cut(s)	84, 259, 267
Sse9I	AATT	2 cut(s)	164, 168
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	145, 212
TaqI	TCGA	1 cut(s)	78
TasI	AATT	2 cut(s)	164, 168
TatI	WGTACW	1 cut(s)	183
Tru1I	TTAA	5 cut(s)	36, 149, 167, 171, 236
Tru9I	TTAA	5 cut(s)	36, 149, 167, 171, 236
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	167
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.