pycom16g18480
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
15121225 .. 15124525
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g18480.5

Sequence Viewer

Length: 543 bp
ATGGAGCATGTAATTGGTGGGAAGTTTAAGCTAGGACGAAAGATCGGTAGTGGATCGTTCGGAGAGCTTTATTTGGGTATTAATGTACAAACTGGAGAGGAGGTAGCTGTCAAGCTGGAATCAGTGAAGACAAAACACCCCCAGCTTCATTATGAGTCAAAGTTGTACATGCTTCTTCAAGGAGGAACTGGTGTACCCCATCTTAAATGGTTCGGTGTTGAGGGTGAATACAATGTCATGGTTATCGACCTGCTTGGTCCCAGCCTTGAAGACCTCTTCAACTATTGCAATCGGAAGTTCTCTTTGAAGACAGTTTTGATGCTTGCAGATCAATTAATAAACAGAGTTGAGTACATGCACTCACGGGGATTTCTTCACCGTGATATAAAGCCTGACAACTTTTTAATGGGCCTGGGACGCAAAGCTAATCAGGTATATATCATTGATTATGGCCTTGCAAAAAAGTATAGAGATCGTTCAAACGCACAAGCACATACCATACAGGGAAAACAAGAATCTGACAGGAACTGCCCGCTATGCTAG

Protein Analysis

181

Amino Acids

20.46

Weight (kDa)

9.05

Isoelectric Point (pI)

23.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AciI CCGC 1 cut(s) 533
AclWI GGATC 1 cut(s) 61
AfaI GTAC 4 cut(s) 87, 167, 195, 353
AgsI TTSAA 5 cut(s) 179, 269, 280, 307, 480
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 6 cut(s) 31, 67, 107, 115, 145, 425
AluI AGCT 6 cut(s) 31, 67, 107, 115, 145, 425
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 528
AoxI GGCC 2 cut(s) 409, 451
AseI ATTAAT 2 cut(s) 81, 335
AspS9I GGNCC 2 cut(s) 257, 409
AsuHPI GGTGA 2 cut(s) 236, 368
AvaII GGWCC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BbsI GAAGAC 3 cut(s) 134, 276, 314
BccI CCATC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 413
BfaI CTAG 2 cut(s) 32, 541
BfuAI ACCTGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 257, 409
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 3 cut(s) 134, 276, 314
BpmI CTGGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse1I ACTGG 2 cut(s) 97, 193
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 412
BseNI ACTGG 2 cut(s) 97, 193
BseRI GAGGAG 1 cut(s) 113
BseYI CCCAGC 2 cut(s) 141, 260
BshFI GGCC 2 cut(s) 411, 453
BslFI GGGAC 2 cut(s) 243, 429
BsmFI GGGAC 2 cut(s) 243, 429
BsnI GGCC 2 cut(s) 411, 453
Bsp1407I TGTACA 2 cut(s) 85, 165
Bsp143I GATC 4 cut(s) 42, 53, 328, 472
BspACI CCGC 1 cut(s) 533
BspANI GGCC 2 cut(s) 411, 453
BspLI GGNNCC 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 1 cut(s) 61
BsrGI TGTACA 2 cut(s) 85, 165
BsrI ACTGG 2 cut(s) 97, 193
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 4 cut(s) 42, 53, 328, 472
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 313, 380
Bst6I CTCTTC 1 cut(s) 281
BstAUI TGTACA 2 cut(s) 85, 165
BstC8I GCNNGC 2 cut(s) 324, 533
BstKTI GATC 4 cut(s) 45, 56, 331, 475
BstMBI GATC 4 cut(s) 42, 53, 328, 472
BstMWI GCNNNNNNNGC 2 cut(s) 417, 537
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 3 cut(s) 11, 172, 358
BstSCI CCNGG 1 cut(s) 411
BstV2I GAAGAC 3 cut(s) 134, 276, 314
BsuRI GGCC 2 cut(s) 411, 453
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 324, 533
CaiI CAGNNNCTG 1 cut(s) 528
Cfr13I GGNCC 2 cut(s) 257, 409
CseI GACGC 1 cut(s) 426
Csp6I GTAC 4 cut(s) 86, 166, 194, 352
CviAII CATG 4 cut(s) 8, 169, 238, 355
CviQI GTAC 4 cut(s) 86, 166, 194, 352
DpnI GATC 4 cut(s) 44, 55, 330, 474
DpnII GATC 4 cut(s) 42, 53, 328, 472
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 411
FaeI CATG 4 cut(s) 11, 172, 241, 358
FaqI GGGAC 2 cut(s) 243, 429
FatI CATG 4 cut(s) 7, 168, 237, 354
FauI CCCGC 1 cut(s) 540
FspBI CTAG 2 cut(s) 32, 541
GsaI CCCAGC 2 cut(s) 145, 264
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 2 cut(s) 411, 453
HgaI GACGC 1 cut(s) 426
Hin1II CATG 4 cut(s) 11, 172, 241, 358
HinfI GANTC 3 cut(s) 119, 155, 515
HphI GGTGA 2 cut(s) 236, 368
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 62, 294, 520
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 313, 380
HpyCH4V TGCA 4 cut(s) 288, 326, 358, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 417, 537
Hsp92II CATG 4 cut(s) 11, 172, 241, 358
Kzo9I GATC 4 cut(s) 42, 53, 328, 472
LmnI GCTCC 1 cut(s) 4
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 32, 541
MalI GATC 4 cut(s) 44, 55, 330, 474
MboI GATC 4 cut(s) 42, 53, 328, 472
MboII GAAGA 6 cut(s) 139, 167, 268, 281, 319, 365
MluCI AATT 2 cut(s) 12, 332
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 5 cut(s) 91, 94, 176, 214, 284
MseI TTAA 5 cut(s) 27, 81, 204, 335, 404
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 2 cut(s) 417, 537
NdeII GATC 4 cut(s) 42, 53, 328, 472
NlaIII CATG 4 cut(s) 11, 172, 241, 358
NlaIV GGNNCC 1 cut(s) 259
NspI RCATGY 3 cut(s) 11, 172, 358
PfeI GAWTC 2 cut(s) 119, 515
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PshBI ATTAAT 2 cut(s) 81, 335
Psp6I CCWGG 1 cut(s) 411
PspFI CCCAGC 2 cut(s) 141, 260
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 257, 409
PstNI CAGNNNCTG 1 cut(s) 528
RsaI GTAC 4 cut(s) 87, 167, 195, 353
RsaNI GTAC 4 cut(s) 86, 166, 194, 352
SaqAI TTAA 5 cut(s) 27, 81, 204, 335, 404
Sau3AI GATC 4 cut(s) 42, 53, 328, 472
Sau96I GGNCC 2 cut(s) 257, 409
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 413
SfaNI GCATC 1 cut(s) 309
SinI GGWCC 1 cut(s) 257
Sse9I AATT 2 cut(s) 12, 332
SsiI CCGC 1 cut(s) 533
SspMI CTAG 2 cut(s) 32, 541
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 313, 380
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 12, 332
TatI WGTACW 3 cut(s) 85, 165, 351
TfiI GAWTC 2 cut(s) 119, 515
Tru1I TTAA 5 cut(s) 27, 81, 204, 335, 404
Tru9I TTAA 5 cut(s) 27, 81, 204, 335, 404
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 257
VspI ATTAAT 2 cut(s) 81, 335
XceI RCATGY 3 cut(s) 11, 172, 358
XspI CTAG 2 cut(s) 32, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.