AT3G23540

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8443233 .. 8448341
5109 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23540.2

Sequence Viewer

Length: 1701 bp
ATGGATCAGCTCGTTAACTTCATCATTCGACCTCCAAGAGCTGAGTATGACCCGGAACATGATCTCTTGGAAAAGAAGTTTATGATGAAAGGTAGATGGTATCAGAGAAAAGATTTAGAGGTTAAAAACAGTAGGGGAGATGTTCTCCAGTGTAGTCATTATATGCCAGTTGAACGCCCTGAAGGAAAGCCTTTACCCTGTGTAATATACTGCCACGGAAACAGTGGATGTAGAGCGGATGGTAGTGAAGCCGCAATTGTGTTGCTGCCTTCGAACATCACAGTTTTTACCCTTGACTTTTCGGGATCGGGTCTCTCAGGCGGGGAACATGTCACCTTAGGCTGGAACGAAAAGGATGATCTGAAGGCTGTGGTTGAGTTTTTGCGGCAGGATGGAAACATATCCTTGATTGGGCTATGGGGGCGGTCAATGGGTGCTGTTACTAGCTTGATGTATGGAGTCGAGGATCCTTCGATTGCAGGAATGATTCTAGACAGCCCCTTCTCCGATTTAGTTGATCTGATGATGGAACTTGTTGATACATATAAGTTTCGTCTGCCAAAGTTTACTGTAAAATTTGCTATACAGTTTATGCGGAGAGCTATTCAGAAAAAAGCAAAGTTTGATATAATGGAATTGAACACCATTAAGGTGGCAAAGGCTAGTTTTGTTCCGGTTTTATTTGGACATGCCTTAGATGATGACTTTATCCGCCCTCATCATTCAGATCGTATATATGAAGCTTACGTAGGTGACAAAAATATCATCAAATTTCCGGGAGACCACAACTCCCCAAGGCCTCCATTCTATTTTGATTCGATCAATATCTTTTTCCATAACGTTCTTCAACCCCCAGAGGTGGTGGGGCCGACATTTTATGACCCATTGGATGATTACTTTGCAAATGGCAGTTGGGGAACTATGAATGACACAAATATTCCACAATCCTCTGTACAGAAAAGTTTAGCCGCAGGTAGCATCTCTGAGGCAATTAATGAAGTCCGCAAGAAACGACCCATGAGTCGCACAGATGTTCCTTCAAATGTCACACTCACATCTAACGGTTCTCCATCAGAAACTAAGGAAAAAGAGAATCCTGATGGCCGTGGCAGTTCATCGTCTCCTGATATGATAAGCTTTGATTTGTCAGACGGCAATCAATACCCTCCTCACCTTAGGATGGCTTTAGATGATGATCAATATGTTGAGTATCAGATGGAGGACATGGCTGATTTCCCATCTAATGCAGAGGAAGAAGAAAGAATGCTTATGAAAGCGGTGATGGAATCGTTGAAAGACTTGGAAGTGCAAAGTCAACAGAAAAAAGAACCTCCTGAGACGAGAATTCATGGCGGCTCTGCTTTTTTAAATGCAGTTCAATGCATTTCATCCAGGGAAGAATCAACTTCAACTCGAGCAAATCAATCAGAGACTGATTCTGCTTCCAGTCCAGTAACACGTAGCCAGGATCAACTACCGTCATCTTCTGAGTCCAATCCTCCTAGTGAGACCTCGAGTTCTCTGGCGAGAACCGTAACCTCTTCTGTTCCCGGCTCTTTAAGCCAGAAGGAAAGCGAGACTGGTGACGTGCCAGGTACAAAGGCCACCGTGACAGTGGAACGTAGTAGTAGTGCACCGGGGAAAGTCTTAGACGGGTTAATACGCAGGTGGGATCTTAACTTTTTCAAAAACAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

63.02

Weight (kDa)

5.11

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1656
AasI GACNNNNNNGTC 1 cut(s) 1020
Acc36I ACCTGC 2 cut(s) 962, 1656
AccBSI CCGCTC 1 cut(s) 236
AclI AACGTT 1 cut(s) 840
AclWI GGATC 6 cut(s) 12, 313, 461, 474, 1476, 1680
AcoI YGGCCR 1 cut(s) 1102
AcsI RAATTY 3 cut(s) 575, 770, 1344
AcuI CTGAAG 2 cut(s) 201, 383
AfaI GTAC 2 cut(s) 954, 1597
AfiI CCNNNNNNNGG 4 cut(s) 342, 411, 859, 1180
AflIII ACRYGT 2 cut(s) 328, 1457
AgsI TTSAA 8 cut(s) 173, 640, 848, 1041, 1294, 1379, 1410, 1687
AjiI CACGTC 1 cut(s) 1588
AjnI CCWGG 3 cut(s) 1391, 1464, 1591
AluBI AGCT 6 cut(s) 10, 41, 447, 602, 743, 1137
AluI AGCT 6 cut(s) 10, 41, 447, 602, 743, 1137
Alw21I GWGCWC 1 cut(s) 1636
Alw26I GTCTC 7 cut(s) 317, 774, 1125, 1331, 1424, 1502, 1571
Alw44I GTGCAC 1 cut(s) 1632
AlwI GGATC 6 cut(s) 12, 313, 461, 474, 1476, 1680
AlwNI CAGNNNCTG 1 cut(s) 1433
Ama87I CYCGRG 2 cut(s) 1413, 1513
AoxI GGCC 4 cut(s) 797, 866, 1102, 1602
ApaLI GTGCAC 1 cut(s) 1632
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 3 cut(s) 575, 770, 1344
AseI ATTAAT 1 cut(s) 993
AspS9I GGNCC 1 cut(s) 866
AsuC2I CCSGG 4 cut(s) 53, 777, 1551, 1638
AsuHPI GGTGA 5 cut(s) 325, 764, 1163, 1291, 1595
AsuII TTCGAA 1 cut(s) 272
AvaI CYCGRG 2 cut(s) 1413, 1513
AxyI CCTNAGG 2 cut(s) 337, 1175
BaeGI GKGCMC 1 cut(s) 1636
BamHI GGATCC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 1636
BbvI GCAGC 1 cut(s) 252
BceAI ACGGC 2 cut(s) 1089, 1168
BciT130I CCWGG 3 cut(s) 1393, 1466, 1593
BclI TGATCA 1 cut(s) 1195
BcnI CCSGG 4 cut(s) 53, 777, 1551, 1638
BcoDI GTCTC 7 cut(s) 317, 774, 1125, 1331, 1424, 1502, 1571
BfaI CTAG 4 cut(s) 444, 491, 663, 1503
BfuAI ACCTGC 2 cut(s) 962, 1656
BisI GCNGC 5 cut(s) 252, 266, 386, 969, 1354
BlsI GCNGC 5 cut(s) 253, 267, 387, 970, 1355
Bme1390I CCNGG 7 cut(s) 53, 777, 1393, 1466, 1551, 1593, 1638
BmeT110I CYCGRG 2 cut(s) 1413, 1513
BmgBI CACGTC 1 cut(s) 1588
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 2 cut(s) 468, 867
BmrFI CCNGG 7 cut(s) 53, 777, 1393, 1466, 1551, 1593, 1638
BmsI GCATC 1 cut(s) 987
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 4 cut(s) 53, 777, 1551, 1638
BsaAI YACGTR 2 cut(s) 748, 1460
BsaBI GATNNNNATC 2 cut(s) 824, 1194
BsaI GGTCTC 3 cut(s) 317, 774, 1502
BsaJI CCNNGG 5 cut(s) 214, 794, 1105, 1392, 1637
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bsc4I CCNNNNNNNGG 4 cut(s) 342, 411, 859, 1180
Bse1I ACTGG 5 cut(s) 148, 167, 1446, 1451, 1585
Bse21I CCTNAGG 2 cut(s) 337, 1175
Bse8I GATNNNNATC 2 cut(s) 824, 1194
BseBI CCWGG 3 cut(s) 1393, 1466, 1593
BseDI CCNNGG 5 cut(s) 214, 794, 1105, 1392, 1637
BseGI GGATG 7 cut(s) 233, 244, 361, 397, 895, 1185, 1388
BseJI GATNNNNATC 2 cut(s) 824, 1194
BseLI CCNNNNNNNGG 4 cut(s) 342, 411, 859, 1180
BseMII CTCAG 5 cut(s) 33, 330, 975, 1326, 1479
BseNI ACTGG 5 cut(s) 148, 167, 1446, 1451, 1585
BseRI GAGGAG 1 cut(s) 1158
BseSI GKGCMC 1 cut(s) 1636
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 4 cut(s) 799, 868, 1104, 1604
BsiHKAI GWGCWC 1 cut(s) 1636
BsiHKCI CYCGRG 2 cut(s) 1413, 1513
BsiSI CCGG 5 cut(s) 53, 674, 776, 1551, 1637
BslI CCNNNNNNNGG 4 cut(s) 342, 411, 859, 1180
BsmAI GTCTC 7 cut(s) 317, 774, 1125, 1331, 1424, 1502, 1571
BsmBI CGTCTC 2 cut(s) 1125, 1331
BsmI GAATGC 1 cut(s) 1269
BsnI GGCC 4 cut(s) 799, 868, 1104, 1604
Bso31I GGTCTC 3 cut(s) 317, 774, 1502
BsoBI CYCGRG 2 cut(s) 1413, 1513
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 1636
Bsp1407I TGTACA 1 cut(s) 952
BspANI GGCC 4 cut(s) 799, 868, 1104, 1604
BspCNI CTCAG 5 cut(s) 34, 329, 976, 1327, 1480
BspLI GGNNCC 2 cut(s) 468, 867
BspMI ACCTGC 2 cut(s) 962, 1656
BspPI GGATC 6 cut(s) 12, 313, 461, 474, 1476, 1680
BspT104I TTCGAA 1 cut(s) 272
BspTNI GGTCTC 3 cut(s) 317, 774, 1502
BsrBI CCGCTC 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 952
BsrI ACTGG 5 cut(s) 148, 167, 1446, 1451, 1585
BssECI CCNNGG 5 cut(s) 214, 794, 1105, 1392, 1637
BssT1I CCWWGG 1 cut(s) 794
Bst2UI CCWGG 3 cut(s) 1393, 1466, 1593
Bst6I CTCTTC 1 cut(s) 1546
BstAUI TGTACA 1 cut(s) 952
BstBAI YACGTR 2 cut(s) 748, 1460
BstBI TTCGAA 1 cut(s) 272
BstDSI CCRYGG 2 cut(s) 214, 1105
BstF5I GGATG 7 cut(s) 233, 244, 361, 397, 895, 1185, 1388
BstMAI GTCTC 7 cut(s) 317, 774, 1125, 1331, 1424, 1502, 1571
BstMWI GCNNNNNNNGC 2 cut(s) 421, 1560
BstNI CCWGG 3 cut(s) 1393, 1466, 1593
BstNSI RCATGY 2 cut(s) 332, 692
BstSCI CCNGG 7 cut(s) 51, 775, 1391, 1464, 1549, 1591, 1636
BstSLI GKGCMC 1 cut(s) 1636
BstSNI TACGTA 1 cut(s) 748
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 466, 1672
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 2 cut(s) 466, 1672
Bsu36I CCTNAGG 2 cut(s) 337, 1175
BsuRI GGCC 4 cut(s) 799, 868, 1104, 1604
BtgI CCRYGG 2 cut(s) 214, 1105
BtrI CACGTC 1 cut(s) 1588
BtsCI GGATG 7 cut(s) 233, 244, 361, 397, 895, 1185, 1388
BtsIMutI CAGTG 3 cut(s) 155, 229, 1620
BveI ACCTGC 2 cut(s) 962, 1656
CaiI CAGNNNCTG 1 cut(s) 1433
Cfr13I GGNCC 1 cut(s) 866
Csp6I GTAC 2 cut(s) 953, 1596
CviAII CATG 6 cut(s) 59, 329, 689, 1018, 1225, 1349
CviQI GTAC 2 cut(s) 953, 1596
DraI TTTAAA 1 cut(s) 1368
DrdI GACNNNNNNGTC 1 cut(s) 1020
DseDI GACNNNNNNGTC 1 cut(s) 1020
EaeI YGGCCR 1 cut(s) 1102
Eam1104I CTCTTC 1 cut(s) 1546
EarI CTCTTC 1 cut(s) 1546
EciI GGCGGA 1 cut(s) 701
Eco105I TACGTA 1 cut(s) 748
Eco130I CCWWGG 1 cut(s) 794
Eco147I AGGCCT 1 cut(s) 799
Eco31I GGTCTC 3 cut(s) 317, 774, 1502
Eco57I CTGAAG 2 cut(s) 201, 383
Eco81I CCTNAGG 2 cut(s) 337, 1175
Eco88I CYCGRG 2 cut(s) 1413, 1513
EcoRI GAATTC 1 cut(s) 1344
EcoRII CCWGG 3 cut(s) 1391, 1464, 1591
EcoT14I CCWWGG 1 cut(s) 794
EcoT22I ATGCAT 1 cut(s) 1385
ErhI CCWWGG 1 cut(s) 794
Esp3I CGTCTC 2 cut(s) 1125, 1331
FaeI CATG 6 cut(s) 62, 332, 692, 1021, 1228, 1352
FatI CATG 6 cut(s) 58, 328, 688, 1017, 1224, 1348
FauI CCCGC 1 cut(s) 314
FbaI TGATCA 1 cut(s) 1195
Fnu4HI GCNGC 5 cut(s) 252, 266, 386, 969, 1354
FokI GGATG 7 cut(s) 240, 251, 368, 404, 902, 1192, 1375
Fsp4HI GCNGC 5 cut(s) 252, 266, 386, 969, 1354
FspBI CTAG 4 cut(s) 444, 491, 663, 1503
GluI GCNGC 5 cut(s) 252, 266, 386, 969, 1354
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 4 cut(s) 799, 868, 1104, 1604
HapII CCGG 5 cut(s) 53, 674, 776, 1551, 1637
Hin1II CATG 6 cut(s) 62, 332, 692, 1021, 1228, 1352
HincII GTYRAC 2 cut(s) 16, 1316
HindII GTYRAC 2 cut(s) 16, 1316
HindIII AAGCTT 2 cut(s) 741, 1135
HinfI GANTC 9 cut(s) 459, 487, 815, 1021, 1093, 1286, 1400, 1436, 1490
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 5 cut(s) 53, 674, 776, 1551, 1637
HphI GGTGA 5 cut(s) 325, 764, 1163, 1291, 1595
Hpy166II GTNNAC 4 cut(s) 16, 567, 1316, 1634
Hpy188III TCNNGA 5 cut(s) 303, 491, 1097, 1124, 1334
Hpy8I GTNNAC 4 cut(s) 16, 567, 1316, 1634
HpyAV CCTTC 7 cut(s) 176, 279, 358, 480, 511, 1047, 1561
HpyCH4IV ACGT 5 cut(s) 747, 840, 1459, 1587, 1621
HpyCH4V TGCA 7 cut(s) 479, 902, 1247, 1309, 1373, 1383, 1634
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 1560
HpySE526I ACGT 5 cut(s) 747, 840, 1459, 1587, 1621
Hsp92II CATG 6 cut(s) 62, 332, 692, 1021, 1228, 1352
Ksp22I TGATCA 1 cut(s) 1195
KspAI GTTAAC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 987
MaeI CTAG 4 cut(s) 444, 491, 663, 1503
MaeII ACGT 5 cut(s) 747, 840, 1459, 1587, 1621
MaeIII GTNAC 8 cut(s) 331, 439, 752, 1045, 1453, 1534, 1583, 1609
MbiI CCGCTC 1 cut(s) 236
MboII GAAGA 6 cut(s) 836, 1265, 1268, 1409, 1476, 1533
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 466, 1672
MhlI GDGCHC 1 cut(s) 1636
MluCI AATT 6 cut(s) 255, 575, 635, 770, 990, 1344
MlyI GAGTC 3 cut(s) 468, 1030, 1499
Mph1103I ATGCAT 1 cut(s) 1385
MseI TTAA 8 cut(s) 15, 123, 648, 993, 1367, 1559, 1658, 1677
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 5 cut(s) 53, 674, 776, 1551, 1637
MspR9I CCNGG 7 cut(s) 53, 777, 1393, 1466, 1551, 1593, 1638
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 1269
MvaI CCWGG 3 cut(s) 1393, 1466, 1593
MwoI GCNNNNNNNGC 2 cut(s) 421, 1560
NciI CCSGG 4 cut(s) 53, 777, 1551, 1638
NlaIII CATG 6 cut(s) 62, 332, 692, 1021, 1228, 1352
NlaIV GGNNCC 2 cut(s) 468, 867
NmuCI GTSAC 5 cut(s) 331, 752, 1045, 1583, 1609
NsiI ATGCAT 1 cut(s) 1385
NspI RCATGY 2 cut(s) 332, 692
NspV TTCGAA 1 cut(s) 272
PaeR7I CTCGAG 2 cut(s) 1413, 1513
PaqCI CACCTGC 1 cut(s) 1656
PceI AGGCCT 1 cut(s) 799
PciI ACATGT 1 cut(s) 328
PctI GAATGC 1 cut(s) 1269
PfeI GAWTC 6 cut(s) 487, 815, 1093, 1286, 1400, 1436
PfoI TCCNGGA 1 cut(s) 775
PkrI GCNGC 5 cut(s) 253, 267, 387, 970, 1355
PleI GAGTC 3 cut(s) 467, 1029, 1498
PpsI GAGTC 3 cut(s) 467, 1029, 1498
Ppu21I YACGTR 2 cut(s) 748, 1460
PscI ACATGT 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 993
Psp1406I AACGTT 1 cut(s) 840
Psp6I CCWGG 3 cut(s) 1391, 1464, 1591
PspGI CCWGG 3 cut(s) 1391, 1464, 1591
PspN4I GGNNCC 2 cut(s) 468, 867
PspPI GGNCC 1 cut(s) 866
PspXI VCTCGAGB 2 cut(s) 1413, 1513
PstNI CAGNNNCTG 1 cut(s) 1433
PsuI RGATCY 2 cut(s) 466, 1672
RsaI GTAC 2 cut(s) 954, 1597
RsaNI GTAC 2 cut(s) 953, 1596
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 8 cut(s) 15, 123, 648, 993, 1367, 1559, 1658, 1677
SatI GCNGC 5 cut(s) 252, 266, 386, 969, 1354
Sau96I GGNCC 1 cut(s) 866
SchI GAGTC 3 cut(s) 468, 1030, 1499
ScrFI CCNGG 7 cut(s) 53, 777, 1393, 1466, 1551, 1593, 1638
SduI GDGCHC 1 cut(s) 1636
SfaNI GCATC 1 cut(s) 987
Sfr274I CTCGAG 2 cut(s) 1413, 1513
SfuI TTCGAA 1 cut(s) 272
SlaI CTCGAG 2 cut(s) 1413, 1513
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 1413, 1513
SmoI CTYRAG 2 cut(s) 1413, 1513
SnaBI TACGTA 1 cut(s) 748
Sse9I AATT 6 cut(s) 255, 575, 635, 770, 990, 1344
SseBI AGGCCT 1 cut(s) 799
SspI AATATT 1 cut(s) 937
SspMI CTAG 4 cut(s) 444, 491, 663, 1503
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 7 cut(s) 51, 775, 1391, 1464, 1549, 1591, 1636
StyI CCWWGG 1 cut(s) 794
TaiI ACGT 5 cut(s) 750, 843, 1462, 1590, 1624
TaqI TCGA 7 cut(s) 28, 272, 462, 473, 818, 1414, 1514
TasI AATT 6 cut(s) 255, 575, 635, 770, 990, 1344
TatI WGTACW 1 cut(s) 952
TauI GCSGC 4 cut(s) 254, 388, 971, 1356
TfiI GAWTC 6 cut(s) 487, 815, 1093, 1286, 1400, 1436
Tru1I TTAA 8 cut(s) 15, 123, 648, 993, 1367, 1559, 1658, 1677
Tru9I TTAA 8 cut(s) 15, 123, 648, 993, 1367, 1559, 1658, 1677
TscAI CASTG 3 cut(s) 155, 229, 1620
TseFI GTSAC 5 cut(s) 331, 752, 1045, 1583, 1609
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 5 cut(s) 331, 752, 1045, 1583, 1609
TspDTI ATGAA 9 cut(s) 10, 101, 753, 938, 1011, 1104, 1286, 1337, 1377
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 3 cut(s) 155, 229, 1620
VneI GTGCAC 1 cut(s) 1632
VspI ATTAAT 1 cut(s) 993
XapI RAATTY 3 cut(s) 575, 770, 1344
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 2 cut(s) 332, 692
XcmI CCANNNNNNNNNTGG 2 cut(s) 221, 1612
XhoI CTCGAG 2 cut(s) 1413, 1513
XspI CTAG 4 cut(s) 444, 491, 663, 1503
Zsp2I ATGCAT 1 cut(s) 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.