Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003389

Physical Location & Seq

Genomic Coordinates Forward (+)

11361235 .. 11362573

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGTCGGATGGAGGTTCCTTCTGGTATTTCATCTACCGATGGGCAATCCGAATCCAAGGATGGACAAACTGATAATGGCCCATCATCTTCTGATATGATTAGCTTTGAATTCGCAAATGGCAGTCCTTGTGGGCCCCATGTTCCAACCACGATGGACGATGATCAGTATGTAGAATACCAGCTTGATGACCTGGAAGGTTTTCCAAGTGATGTCGATGAGGAAGAAAGGATGTTCATGGAAGCAGTGATGTTATCACTAAAAGACTTAGAAATGAGAGACTCTCAGGCAGAGGAACAATCGCCCTTGGATACACCTGATTCTCTAAATTTGTTGCAAAAAGATGACCAGCCGGATGATGCATCTACTGCAGAGAAGCAAGAGCTGTTGGAGACAGAATCTACTTCCACTTCAGTTAGGCACTTAGGATCCTCGAAAACAGAATCTATTTCTACTTCAGTAAGTAAATCCCACGATTCGAGACCTGAAGATCAAACTCCAACAAGGGTTCCAACAGCAGAACCTGCATCACAAACGCCTCTATCCATAATGGATGGGAGCGCGGGGCCATCTAGCCAAAGCGATACATCAGAAAGCATCCAAAGAACATCAGATAGTGACTTGTCAGCCAAGACGACAGCCACAGTGACGGTGGTAAAAAATCCTGCAAGCAATGTCATGGATGGTTTGATACGGCGTTGGGATTTTAACTTCTTTAGAAACAACCACAGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

246

Amino Acids

26.76

Weight (kDa)

4.2

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23540 AT3G23540 AT3G23540 AT4G14290 AT4G14290 AT4G14290 AT4G14290 AT4G14290
fragaria_vesca	FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200
malus_domestica	MD13G1180700.v1.1 MD16G1181400.v1.1
prunus_persica	Prupe.1G148800_v2.0.a1 Prupe.1G148800_v2.0.a1
pyrus_communis	pycom12g09460 pycom12g09470 pycom12g09480 pycom13g15590 pycom16g15220
rosa_chinensis	RchiOBHm_Chr4g0419001
rosa_laevigata	RLG00000007834
rosa_multiflora	Rmu_sc0010159.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362060
rosa_rugosa	Rorug04G0156000 Rorug04G0156000 Rorug04G0156000 Rorug04G0156100
rosa_samantha	Rh4AG217800 Rh4BG212400 Rh4DG216400
rosa_wichuraiana	Rw4G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccII	CGCG	1 cut(s)	563
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	2 cut(s)	423, 436
AcsI	RAATTY	2 cut(s)	110, 328
AcuI	CTGAAG	3 cut(s)	396, 441, 507
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	105, 184, 385
AluI	AGCT	3 cut(s)	105, 184, 385
Alw26I	GTCTC	3 cut(s)	273, 386, 475
AlwI	GGATC	2 cut(s)	423, 436
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	3 cut(s)	79, 134, 566
ApaI	GGGCCC	1 cut(s)	138
ApoI	RAATTY	2 cut(s)	110, 328
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	4 cut(s)	80, 134, 135, 566
BaeGI	GKGCMC	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	138
BccI	CCATC	8 cut(s)	4, 35, 56, 91, 148, 548, 577, 677
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	304
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	3 cut(s)	273, 386, 475
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	194
BmgT120I	GGNCC	4 cut(s)	80, 134, 135, 566
BmiI	GGNNCC	6 cut(s)	18, 136, 137, 430, 510, 567
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	4 cut(s)	349, 371, 536, 606
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	57, 306
Bse3DI	GCAATG	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	57, 306
BseGI	GGATG	7 cut(s)	15, 67, 237, 361, 559, 597, 688
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	3 cut(s)	81, 136, 568
BsiSI	CCGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	273, 386, 475
BsnI	GGCC	3 cut(s)	81, 136, 568
Bso31I	GGTCTC	1 cut(s)	475
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	163, 428, 490
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	3 cut(s)	81, 136, 568
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	6 cut(s)	18, 136, 137, 430, 510, 567
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	423, 436
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	57, 306
BssMI	GATC	3 cut(s)	163, 428, 490
BssT1I	CCWWGG	2 cut(s)	57, 306
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	646, 652, 731
BstAPI	GCANNNNNTGC	2 cut(s)	368, 524
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	3 cut(s)	268, 285, 424
BstF5I	GGATG	7 cut(s)	15, 67, 237, 361, 559, 597, 688
BstFNI	CGCG	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	3 cut(s)	166, 431, 493
BstMAI	GTCTC	3 cut(s)	273, 386, 475
BstMBI	GATC	3 cut(s)	163, 428, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 524
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	138
BstUI	CGCG	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	81, 136, 568
BtsCI	GGATG	7 cut(s)	15, 67, 237, 361, 559, 597, 688
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 651
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	4 cut(s)	80, 134, 135, 566
CviAII	CATG	3 cut(s)	140, 238, 679
DdeI	CTNAG	3 cut(s)	268, 285, 424
DpnI	GATC	3 cut(s)	165, 430, 492
DpnII	GATC	3 cut(s)	163, 428, 490
Eco130I	CCWWGG	2 cut(s)	57, 306
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	475
Eco57I	CTGAAG	3 cut(s)	396, 441, 507
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	57, 306
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	57, 306
FaeI	CATG	3 cut(s)	143, 241, 682
FaiI	YATR	6 cut(s)	98, 141, 171, 239, 548, 680
FatI	CATG	3 cut(s)	139, 237, 678
FauI	CCCGC	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	163
FokI	GGATG	7 cut(s)	22, 74, 244, 368, 566, 584, 695
FriOI	GRGCYC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	562
HaeIII	GGCC	3 cut(s)	81, 136, 568
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	3 cut(s)	143, 241, 682
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HinfI	GANTC	7 cut(s)	4, 53, 281, 320, 398, 443, 476
HpaII	CCGG	1 cut(s)	353
Hpy188I	TCNGA	5 cut(s)	9, 52, 94, 592, 613
Hpy188III	TCNNGA	1 cut(s)	480
HpyAV	CCTTC	2 cut(s)	30, 191
HpyCH4III	ACNGT	3 cut(s)	646, 652, 731
HpyCH4V	TGCA	5 cut(s)	337, 362, 371, 527, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 524
HpyF3I	CTNAG	3 cut(s)	268, 285, 424
Hsp92II	CATG	3 cut(s)	143, 241, 682
HspAI	GCGC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	163, 428, 490
LmnI	GCTCC	1 cut(s)	558
LweI	GCATC	4 cut(s)	349, 371, 536, 606
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	617, 646
MalI	GATC	3 cut(s)	165, 430, 492
MboI	GATC	3 cut(s)	163, 428, 490
MboII	GAAGA	3 cut(s)	81, 236, 500
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	110, 328
MlyI	GAGTC	2 cut(s)	13, 275
MmeI	TCCRAC	4 cut(s)	170, 369, 524, 536
MnlI	CCTC	5 cut(s)	7, 214, 286, 442, 549
Mph1103I	ATGCAT	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	708
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	368, 524
NdeII	GATC	3 cut(s)	163, 428, 490
NlaIII	CATG	3 cut(s)	143, 241, 682
NlaIV	GGNNCC	6 cut(s)	18, 136, 137, 430, 510, 567
NmuCI	GTSAC	2 cut(s)	617, 646
NsiI	ATGCAT	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	5 cut(s)	53, 320, 398, 443, 476
PleI	GAGTC	2 cut(s)	12, 275
PpsI	GAGTC	2 cut(s)	12, 275
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	6 cut(s)	18, 136, 137, 430, 510, 567
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	4 cut(s)	80, 134, 135, 566
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	708
Sau3AI	GATC	3 cut(s)	163, 428, 490
Sau96I	GGNCC	4 cut(s)	80, 134, 135, 566
SchI	GAGTC	2 cut(s)	13, 275
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	9 cut(s)	18, 107, 186, 195, 202, 319, 387, 487, 526
SfaNI	GCATC	4 cut(s)	349, 371, 536, 606
SfcI	CTRYAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	110, 328
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	57, 306
TaaI	ACNGT	3 cut(s)	646, 652, 731
TaqI	TCGA	4 cut(s)	216, 434, 479, 733
TasI	AATT	2 cut(s)	110, 328
TfiI	GAWTC	5 cut(s)	53, 320, 398, 443, 476
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	2 cut(s)	252, 651
TseFI	GTSAC	2 cut(s)	617, 646
Tsp45I	GTSAC	2 cut(s)	617, 646
TspDTI	ATGAA	2 cut(s)	21, 226
TspRI	CASTG	2 cut(s)	252, 651
XapI	RAATTY	2 cut(s)	110, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	573
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.