Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003389

Physical Location & Seq

Genomic Coordinates Forward (+)

11447718 .. 11448896

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCGAACTTTGCAGAGAGACAAAAACATCATCAAATTTGAGGGAGATCACAATTCTCCACGACCTCAATTCTACTTTGATTCTATAAACATCTTTTTTCACAATGTTTTGCAACCCCCGGAGGATGAGGTTGTGGAAACATTTTTTGACACTCTACAAGAGACCTTTGGTAAGGTAAATAAAACTGAAATTCATCTGGCTGTAAGTTTCTATTGTATAAAAATTGCTAGATTTAACGTTCACAGCCCTTCTCAAATGTTGACTTCTTTTTACCTGCAGGGTAGTTGGAGAAGTGTGCACACACAGCTGATTATGATCACGGATGTTCAACTGCTGCTACAGGTGATTAAAGTGCCTCATTTTCTCTTTAACTTCTCATGTGCACAGGCTGTTCTACCTCTTTCTTACTCAATTTTCAAGAAGACCCATGAGTCGGATGGAGGTTATAAAAAAATATTTTATAAAGGGAGTACGCGGATATTTACAACTGTTTACTGTTCTGCAGGTGGATTAACTTTTCTTTTTTCTTTTTTTTCTTTTGTTATCTTCTATGATTTTACCTGGCCAATCCGAATCCAAGGTATTTTGCCTTTTCTTTTCTTAAACTGCTTCCAAGATCCCATATTTTCTTCCTCTAAAAACAAACCTTTGCGCCACTCTATTTTATGGCGCGTTTGTACCCAAGTGGTTCAAAGTCTTGTCTGGTTCTATCTGTTAACTAGAAGCTTAACAGAGTTAAACTTCTTGATTATGTATGGTGGTGCAGGATGGACAAGCGATAATGGCCCATCATCTTCAGATATGATTAGCTTTGAATTCGCGAATGGCAGTCCTTGTGGGCCCCATGTTCCAACCATGATGAACGACGATCGATATGTAGAATACCAGCTTGATAACCTGGAAGGTTTTCCAAGTGATGTCGAAGAGGAAGAAAGGGTGAGTCATATAGTTGACCTAGATGAGTTCTGGATTCAAGACCTTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

330

Amino Acids

38.28

Weight (kDa)

5.46

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23540 AT3G23540 AT3G23540 AT4G14290 AT4G14290 AT4G14290 AT4G14290 AT4G14290
fragaria_vesca	FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200
malus_domestica	MD13G1180700.v1.1 MD16G1181400.v1.1
prunus_persica	Prupe.1G148800_v2.0.a1 Prupe.1G148800_v2.0.a1
pyrus_communis	pycom12g09460 pycom12g09470 pycom12g09480 pycom13g15590 pycom16g15220
rosa_chinensis	RchiOBHm_Chr4g0419001
rosa_laevigata	RLG00000007834
rosa_multiflora	Rmu_sc0010159.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362060
rosa_rugosa	Rorug04G0156000 Rorug04G0156000 Rorug04G0156000 Rorug04G0156100
rosa_samantha	Rh4AG217800 Rh4BG212400 Rh4DG216400
rosa_wichuraiana	Rw4G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	447, 462
AarI	CACCTGC	1 cut(s)	494
AasI	GACNNNNNNGTC	1 cut(s)	430
Acc36I	ACCTGC	2 cut(s)	282, 494
AccII	CGCG	3 cut(s)	475, 672, 821
AciI	CCGC	1 cut(s)	475
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	563
AcsI	RAATTY	3 cut(s)	35, 189, 815
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	2 cut(s)	472, 679
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	6 cut(s)	329, 418, 692, 815, 974, 986
AjnI	CCWGG	2 cut(s)	560, 897
AluBI	AGCT	4 cut(s)	307, 726, 810, 889
AluI	AGCT	4 cut(s)	307, 726, 810, 889
Alw21I	GWGCWC	2 cut(s)	300, 385
Alw26I	GTCTC	2 cut(s)	12, 155
Alw44I	GTGCAC	2 cut(s)	296, 381
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	3 cut(s)	563, 784, 839
ApaI	GGGCCC	1 cut(s)	843
ApaLI	GTGCAC	2 cut(s)	296, 381
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	3 cut(s)	35, 189, 815
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	654, 672
AspS9I	GGNCC	3 cut(s)	785, 839, 840
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	355, 949
BaeGI	GKGCMC	3 cut(s)	300, 385, 843
BalI	TGGCCA	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	843
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	2 cut(s)	300, 385
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	431, 762, 796
BciT130I	CCWGG	2 cut(s)	562, 899
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	12, 155
BfaI	CTAG	3 cut(s)	228, 720, 956
BfmI	CTRYAG	3 cut(s)	275, 338, 501
BfuAI	ACCTGC	2 cut(s)	282, 494
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	3 cut(s)	119, 562, 899
BmgT120I	GGNCC	3 cut(s)	785, 839, 840
BmiI	GGNNCC	2 cut(s)	841, 842
BmrFI	CCNGG	3 cut(s)	119, 562, 899
BpiI	GAAGAC	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	871
BsaBI	GATNNNNATC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	117, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	562, 899
BseCI	ATCGAT	1 cut(s)	871
BseDI	CCNNGG	2 cut(s)	117, 577
BseGI	GGATG	4 cut(s)	130, 328, 442, 773
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseSI	GKGCMC	3 cut(s)	300, 385, 843
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	783
Bsh1236I	CGCG	3 cut(s)	475, 672, 821
Bsh1285I	CGRYCG	1 cut(s)	871
BshFI	GGCC	3 cut(s)	565, 786, 841
BshVI	ATCGAT	1 cut(s)	871
BsiEI	CGRYCG	1 cut(s)	871
BsiHKAI	GWGCWC	2 cut(s)	300, 385
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	12, 155
BsnI	GGCC	3 cut(s)	565, 786, 841
Bso31I	GGTCTC	1 cut(s)	155
Bsp120I	GGGCCC	1 cut(s)	839
Bsp1286I	GDGCHC	3 cut(s)	300, 385, 843
Bsp143I	GATC	4 cut(s)	46, 315, 616, 868
Bsp68I	TCGCGA	1 cut(s)	821
BspACI	CCGC	1 cut(s)	475
BspANI	GGCC	3 cut(s)	565, 786, 841
BspDI	ATCGAT	1 cut(s)	871
BspFNI	CGCG	3 cut(s)	475, 672, 821
BspLI	GGNNCC	2 cut(s)	841, 842
BspMAI	CTGCAG	2 cut(s)	279, 505
BspMI	ACCTGC	2 cut(s)	282, 494
BspPI	GGATC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	117, 577
BssMI	GATC	4 cut(s)	46, 315, 616, 868
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	562, 899
Bst4CI	ACNGT	2 cut(s)	490, 497
Bst6I	CTCTTC	1 cut(s)	918
BstF5I	GGATG	4 cut(s)	130, 328, 442, 773
BstFNI	CGCG	3 cut(s)	475, 672, 821
BstHHI	GCGC	2 cut(s)	654, 672
BstKTI	GATC	4 cut(s)	49, 318, 619, 871
BstMAI	GTCTC	2 cut(s)	12, 155
BstMBI	GATC	4 cut(s)	46, 315, 616, 868
BstMCI	CGRYCG	1 cut(s)	871
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 304, 783
BstNI	CCWGG	2 cut(s)	562, 899
BstSCI	CCNGG	3 cut(s)	117, 560, 897
BstSFI	CTRYAG	3 cut(s)	275, 338, 501
BstSLI	GKGCMC	3 cut(s)	300, 385, 843
BstUI	CGCG	3 cut(s)	475, 672, 821
BstV1I	GCAGC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	871
BsuRI	GGCC	3 cut(s)	565, 786, 841
BsuTUI	ATCGAT	1 cut(s)	871
BtsCI	GGATG	4 cut(s)	130, 328, 442, 773
BtuMI	TCGCGA	1 cut(s)	821
BveI	ACCTGC	2 cut(s)	282, 494
CfoI	GCGC	2 cut(s)	654, 672
Cfr13I	GGNCC	3 cut(s)	785, 839, 840
ClaI	ATCGAT	1 cut(s)	871
Csp6I	GTAC	2 cut(s)	471, 678
CviAII	CATG	4 cut(s)	378, 428, 845, 856
CviQI	GTAC	2 cut(s)	471, 678
DpnI	GATC	4 cut(s)	48, 317, 618, 870
DpnII	GATC	4 cut(s)	46, 315, 616, 868
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	563
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
Eco130I	CCWWGG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	843
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	840
EcoRI	GAATTC	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	560, 897
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	4 cut(s)	381, 431, 848, 859
FatI	CATG	4 cut(s)	377, 427, 844, 855
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	4 cut(s)	137, 335, 449, 780
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	3 cut(s)	228, 720, 956
GlaI	GCGC	2 cut(s)	653, 671
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	565, 786, 841
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	2 cut(s)	654, 672
Hin1II	CATG	4 cut(s)	381, 431, 848, 859
Hin6I	GCGC	2 cut(s)	652, 670
HinP1I	GCGC	2 cut(s)	652, 670
HincII	GTYRAC	3 cut(s)	261, 717, 952
HindII	GTYRAC	3 cut(s)	261, 717, 952
HindIII	AAGCTT	1 cut(s)	724
HinfI	GANTC	5 cut(s)	80, 431, 573, 940, 970
HpaI	GTTAAC	1 cut(s)	717
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	355, 949
Hpy166II	GTNNAC	7 cut(s)	241, 261, 298, 383, 493, 717, 952
Hpy188I	TCNGA	3 cut(s)	436, 572, 799
Hpy188III	TCNNGA	5 cut(s)	418, 745, 820, 967, 974
Hpy8I	GTNNAC	7 cut(s)	241, 261, 298, 383, 493, 717, 952
Hpy99I	CGWCG	1 cut(s)	869
HpyAV	CCTTC	2 cut(s)	258, 896
HpyCH4III	ACNGT	2 cut(s)	490, 497
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	7 cut(s)	13, 112, 277, 298, 383, 503, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 304, 783
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	381, 431, 848, 859
HspAI	GCGC	2 cut(s)	652, 670
Ksp22I	TGATCA	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	717
Kzo9I	GATC	4 cut(s)	46, 315, 616, 868
Lsp1109I	GCAGC	1 cut(s)	321
MaeI	CTAG	3 cut(s)	228, 720, 956
MaeII	ACGT	1 cut(s)	237
MalI	GATC	4 cut(s)	48, 317, 618, 870
MboI	GATC	4 cut(s)	46, 315, 616, 868
MboII	GAAGA	6 cut(s)	433, 538, 621, 786, 935, 941
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	3 cut(s)	300, 385, 843
MlsI	TGGCCA	1 cut(s)	565
MluCI	AATT	7 cut(s)	35, 52, 68, 189, 222, 411, 815
MluNI	TGGCCA	1 cut(s)	565
MlyI	GAGTC	2 cut(s)	440, 949
MmeI	TCCRAC	3 cut(s)	266, 414, 875
MnlI	CCTC	9 cut(s)	34, 75, 115, 121, 366, 408, 434, 643, 919
Mox20I	TGGCCA	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	906
MscI	TGGCCA	1 cut(s)	565
MseI	TTAA	8 cut(s)	234, 348, 369, 512, 602, 716, 728, 737
Msp20I	TGGCCA	1 cut(s)	565
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	3 cut(s)	119, 562, 899
MvaI	CCWGG	2 cut(s)	562, 899
MvnI	CGCG	3 cut(s)	475, 672, 821
MwoI	GCNNNNNNNGC	3 cut(s)	10, 304, 783
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	46, 315, 616, 868
NlaIII	CATG	4 cut(s)	381, 431, 848, 859
NlaIV	GGNNCC	2 cut(s)	841, 842
NruI	TCGCGA	1 cut(s)	821
PaqCI	CACCTGC	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	80, 573, 970
PkrI	GCNGC	1 cut(s)	336
Ple19I	CGATCG	1 cut(s)	871
PleI	GAGTC	2 cut(s)	439, 948
PpsI	GAGTC	2 cut(s)	439, 948
PsiI	TTATAA	2 cut(s)	447, 462
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	560, 897
PspGI	CCWGG	2 cut(s)	560, 897
PspN4I	GGNNCC	2 cut(s)	841, 842
PspOMI	GGGCCC	1 cut(s)	839
PspPI	GGNCC	3 cut(s)	785, 839, 840
PstI	CTGCAG	2 cut(s)	279, 505
PsuI	RGATCY	1 cut(s)	616
PvuI	CGATCG	1 cut(s)	871
PvuII	CAGCTG	1 cut(s)	307
RruI	TCGCGA	1 cut(s)	821
RsaI	GTAC	2 cut(s)	472, 679
RsaNI	GTAC	2 cut(s)	471, 678
SaqAI	TTAA	8 cut(s)	234, 348, 369, 512, 602, 716, 728, 737
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	4 cut(s)	46, 315, 616, 868
Sau96I	GGNCC	3 cut(s)	785, 839, 840
SbfI	CCTGCAGG	1 cut(s)	279
SchI	GAGTC	2 cut(s)	440, 949
ScrFI	CCNGG	3 cut(s)	119, 562, 899
SdaI	CCTGCAGG	1 cut(s)	279
SduI	GDGCHC	3 cut(s)	300, 385, 843
SfcI	CTRYAG	3 cut(s)	275, 338, 501
Sse8387I	CCTGCAGG	1 cut(s)	279
Sse9I	AATT	7 cut(s)	35, 52, 68, 189, 222, 411, 815
SsiI	CCGC	1 cut(s)	475
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	3 cut(s)	228, 720, 956
StyD4I	CCNGG	3 cut(s)	117, 560, 897
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	490, 497
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	871, 921
TasI	AATT	7 cut(s)	35, 52, 68, 189, 222, 411, 815
TfiI	GAWTC	3 cut(s)	80, 573, 970
Tru1I	TTAA	8 cut(s)	234, 348, 369, 512, 602, 716, 728, 737
Tru9I	TTAA	8 cut(s)	234, 348, 369, 512, 602, 716, 728, 737
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	182, 875
TspGWI	ACGGA	1 cut(s)	335
VneI	GTGCAC	2 cut(s)	296, 381
XapI	RAATTY	3 cut(s)	35, 189, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	3 cut(s)	228, 720, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.