Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003389

Physical Location & Seq

Genomic Coordinates Forward (+)

11448939 .. 11449879

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09470.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTTCATGGAAGCAGTGATGTTATCACTAAAAGACTTAGAAATGAGAGGCCCTCAGGCAGAGGAACAACCGCCCTGGGATACCCCTGATTCTTTAAATTTGTTGCAAAAAGATGACCAGCCAGATGATGCATCTACTGCAGAAAAGCGAGAGCTGTTGGAGACACAATCTACTCCCACTTCAGTTTGGGCACTTGGGATCCTTGAAAACAGAGTCTATTTCTACTTCAGTAATAACCCTCTTTTGACAATTGTAGAGGGATTACTCAAACACGTTCACAAGACTCAAAATAGGCTAAAAACACTCAAAACTGCCTTAAAAACACAATCTGGGCAATTTGGACCAATTAGACACTCTAAGACAATTGGGGATTTGGCAGATTTAGGCGAAATTGATAGAATTAAGTGGATGGTGAGATGGCTAGGAGGTTTTTCTCCACACATGGCATACTCGCATACAACACAATCTTCAGTTGCTTATTCAATGATTTATGAACCTCAACACCCCAAGTTAATTAGGTACGGAATTAGCGCATTGCAATCAAATTATTCCTCAAAAGTTCTCTATATGAAAGCGCATAATAGAAAAACAATCAAAGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

202

Amino Acids

23.02

Weight (kDa)

8.67

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23540 AT3G23540 AT3G23540 AT4G14290 AT4G14290 AT4G14290 AT4G14290 AT4G14290
fragaria_vesca	FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200
malus_domestica	MD13G1180700.v1.1 MD16G1181400.v1.1
prunus_persica	Prupe.1G148800_v2.0.a1 Prupe.1G148800_v2.0.a1
pyrus_communis	pycom12g09460 pycom12g09470 pycom12g09480 pycom13g15590 pycom16g15220
rosa_chinensis	RchiOBHm_Chr4g0419001
rosa_laevigata	RLG00000007834
rosa_multiflora	Rmu_sc0010159.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362060
rosa_rugosa	Rorug04G0156000 Rorug04G0156000 Rorug04G0156000 Rorug04G0156100
rosa_samantha	Rh4AG217800 Rh4BG212400 Rh4DG216400
rosa_wichuraiana	Rw4G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	193, 206
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	3 cut(s)	165, 211, 453
AfaI	GTAC	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	206, 483
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	193, 206
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	533, 577
AspS9I	GGNCC	2 cut(s)	50, 341
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	198
BccI	CCATC	2 cut(s)	403, 411
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	50, 341
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	118, 140
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BsaJI	CCNNGG	2 cut(s)	74, 75
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	74, 75
BseGI	GGATG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	198, 598
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	2 cut(s)	193, 206
BsrDI	GCAATG	1 cut(s)	533
BssECI	CCNNGG	2 cut(s)	74, 75
BssMI	GATC	2 cut(s)	198, 598
Bst2UI	CCWGG	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	37, 54, 357
BstF5I	GGATG	1 cut(s)	414
BstHHI	GCGC	2 cut(s)	533, 577
BstKTI	GATC	2 cut(s)	201, 601
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	198, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
CfoI	GCGC	2 cut(s)	533, 577
Cfr13I	GGNCC	2 cut(s)	50, 341
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	2 cut(s)	7, 442
CviJI	RGCY	5 cut(s)	51, 121, 154, 295, 421
CviKI_1	RGCY	5 cut(s)	51, 121, 154, 295, 421
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	3 cut(s)	37, 54, 357
DpnI	GATC	2 cut(s)	200, 600
DpnII	GATC	2 cut(s)	198, 598
DraI	TTTAAA	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	3 cut(s)	165, 211, 453
Eco81I	CCTNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	2 cut(s)	10, 445
FaiI	YATR	8 cut(s)	8, 443, 448, 456, 492, 567, 569, 579
FatI	CATG	2 cut(s)	6, 441
FokI	GGATG	1 cut(s)	421
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	532, 576
HaeIII	GGCC	1 cut(s)	51
HhaI	GCGC	2 cut(s)	533, 577
Hin1II	CATG	2 cut(s)	10, 445
Hin6I	GCGC	2 cut(s)	531, 575
HinP1I	GCGC	2 cut(s)	531, 575
HinfI	GANTC	3 cut(s)	89, 213, 283
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	4 cut(s)	106, 131, 140, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	3 cut(s)	37, 54, 357
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	10, 445
HspAI	GCGC	2 cut(s)	531, 575
Kzo9I	GATC	2 cut(s)	198, 598
LpnPI	CCDG	7 cut(s)	41, 61, 88, 99, 131, 135, 315
LweI	GCATC	2 cut(s)	118, 140
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	273
MalI	GATC	2 cut(s)	200, 600
MboI	GATC	2 cut(s)	198, 598
MboII	GAAGA	1 cut(s)	459
MfeI	CAATTG	2 cut(s)	249, 363
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	222, 277
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	41, 55, 63, 249, 250, 419, 507, 562
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	4 cut(s)	95, 317, 402, 512
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	2 cut(s)	249, 363
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	198, 598
NlaIII	CATG	2 cut(s)	10, 445
NlaIV	GGNNCC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	133
PasI	CCCWGGG	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	221, 277
PpsI	GAGTC	2 cut(s)	221, 277
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	50, 341
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	4 cut(s)	95, 317, 402, 512
Sau3AI	GATC	2 cut(s)	198, 598
Sau96I	GGNCC	2 cut(s)	50, 341
SchI	GAGTC	2 cut(s)	222, 277
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	5 cut(s)	156, 276, 430, 499, 521
SfaNI	GCATC	2 cut(s)	118, 140
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	341
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	95, 317, 402, 512
Tru9I	TTAA	4 cut(s)	95, 317, 402, 512
TscAI	CASTG	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	507, 584
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.