Rw4G018620

Serine aminopeptidase, S33

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
41328481 .. 41336118
7638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018620.1

Sequence Viewer

Length: 1557 bp
ATGGAGCAGCTTGTCAACTTCATCATTCGGCCTCCTAGGGCTGAATACGACCCAAAAAATGATTTATTGGACGAGGAGTTCATACTCAAGGGGAAATGGTATCAAAGGAAGGATGTGGAGGTTAAAAACAGTCGGGGAGATGTCCTCAAGTGTAGTCATTACATCCCCATTGTTAGTCCTGAAGGAAAGCCTTTGCCCTGTGTCATATATTGTCATGGAAACAGTGGGTGCAGGGCTGATGCAAGTGAAGCGGCCATTATTTTGCTGCCCTCAAATATTACAGTTTTCGCTCTTGATTTCTCAGGATCTGGGCTCTCTGGTGGAGACCACGTCACATTGGGGTGGAATGAAAAGGATGACTTGAAGACTGTAGTTGATTATTTGCGAGCAGATGGAAATGTCTCTTTAATTGGCCTGTGGGGCCGTTCAATGGGTGCTGTCACGAGTCTCTTGTATGGAGCTGAGGACCCTTCAATCGCAGGAGTTGTTCTTGACAGTCCATTCTCTGATTTGGTTGATTTAATGATGGAACTTGTGGACACCTACAAAATTCGTTTACCGAAGTTCACTGTGAAGTTTGCTATCCAATACATGCGAAGAGCTATCCAGAAAAAGGCAAAATTTGACATAACGAACCTGAACACAATTAAGGTGGCAAGCTCCTGCTTTGTTCCAGCTTTGTTTGGACATGCCATTGAGGACGATTTTATACAACCCCATCATTCAGATCGTATATTTGAGGCTTATATGGGAGATAAAAATATCATCAAGTTTGAGGGAGATCACAACTCTCCACGACCTCAGTTCTACTTTGATTCTATAAATATCTTTTTCCACAATGTTTTGCAACCCCCAGAGGATGAGGTTGGGGGTACGTTTTTCGACACCATGCATGATAACTTCGGCAAGGGTAGTTGGAGAACCGTGCGTGAGGTTGATTATGACCACGGAAGTGTAACTGCTTCTTCTAAAGAACCAGCAACGAGTGGCAGCACACAGGATGCCATTAGCCAACTCCGCTCAAGAAGACCCATGAGTCGAACAGATGTTCCTTCTGGTGTATCATCTAAAGATGACGAATCTCATTCTAAGGATGGAAAAGTCGATCATGATCCTTGTCCATCATCTTCTGACATGATTAGCTTTGAATTCTCAAATGGACACCCCCATGTTCCAGCGCCAATGGACAATGATCAGTATGTGGAATACCAACTTGAGGACTTGGCAGGCTTTCCTAGTGATGTGGAGGAGGAAGAAAGGATGTTCATGGAAGCAGTGATATTGTCACTAAAGGACTTAGAAATGAGACACCCAAACCCACAGGCAGAAGAGCAACCACCAGGGAATACCCCCGATTCTTCAAAGATATCAGAAAAAGATGACTATCATGATGCCGTGTCTCCGGTAGAACAGCGAGAACCTGTAGAGACAGCATCAACTTCCGCATCAAGTGCACATCTGGGTCCTCGAAAGCAGAATCTATTTCCAGTTCAGCTGTTAAGGTCGATGATTCGAGACCTGAGCAGCAAATTCCTGACGCAGCTGTACCATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

57.97

Weight (kDa)

5.01

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 64 - 175 6e-11 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 66 - 187 1.6e-08 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1035
AccBSI CCGCTC 1 cut(s) 1020
AciI CCGC 3 cut(s) 251, 1018, 1443
AclWI GGATC 2 cut(s) 313, 1106
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 4 cut(s) 549, 620, 1148, 1529
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 874, 1547
AfiI CCNNNNNNNGG 3 cut(s) 430, 613, 1216
AgsI TTSAA 5 cut(s) 364, 429, 474, 1148, 1362
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 1339
AleI CACNNNNGTG 1 cut(s) 951
AloI GAACNNNNNNTCC 4 cut(s) 62, 94, 1033, 1065
AluBI AGCT 8 cut(s) 10, 461, 602, 660, 677, 1143, 1495, 1543
AluI AGCT 8 cut(s) 10, 461, 602, 660, 677, 1143, 1495, 1543
Alw21I GWGCWC 1 cut(s) 1456
Alw26I GTCTC 7 cut(s) 318, 406, 452, 1300, 1404, 1421, 1509
Alw44I GTGCAC 1 cut(s) 1452
AlwI GGATC 2 cut(s) 313, 1106
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 4 cut(s) 29, 252, 412, 421
ApaLI GTGCAC 1 cut(s) 1452
ApeKI GCWGC 5 cut(s) 7, 265, 990, 1524, 1540
ApoI RAATTY 4 cut(s) 549, 620, 1148, 1529
AspA2I CCTAGG 1 cut(s) 35
AspLEI GCGC 1 cut(s) 1180
AspS9I GGNCC 3 cut(s) 421, 466, 1463
AvaII GGWCC 2 cut(s) 466, 1463
AvrII CCTAGG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 1456
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 442
BbsI GAAGAC 2 cut(s) 371, 1033
Bbv12I GWGCWC 1 cut(s) 1456
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 5 cut(s) 19, 252, 1002, 1536, 1552
BccI CCATC 5 cut(s) 386, 520, 726, 1088, 1129
BceAI ACGGC 2 cut(s) 408, 1379
BciT130I CCWGG 1 cut(s) 1341
BclI TGATCA 1 cut(s) 1192
BcoDI GTCTC 7 cut(s) 318, 406, 452, 1300, 1404, 1421, 1509
BfaI CTAG 2 cut(s) 36, 1236
BfmI CTRYAG 2 cut(s) 369, 1422
BfoI RGCGCY 1 cut(s) 1181
BglI GCCNNNNNGGC 1 cut(s) 420
BisI GCNGC 6 cut(s) 8, 252, 266, 991, 1525, 1541
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 6 cut(s) 9, 253, 267, 992, 1526, 1542
Bme1390I CCNGG 1 cut(s) 1341
Bme18I GGWCC 2 cut(s) 466, 1463
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 421, 466, 1463
BmiI GGNNCC 3 cut(s) 422, 468, 1464
BmrFI CCNGG 1 cut(s) 1341
BmsI GCATC 5 cut(s) 229, 991, 1381, 1442, 1454
BpiI GAAGAC 2 cut(s) 371, 1033
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bpu10I CCTNAGC 2 cut(s) 462, 1520
BpuEI CTTGAG 4 cut(s) 71, 131, 1006, 1235
BsaBI GATNNNNATC 2 cut(s) 1110, 1383
BsaI GGTCTC 2 cut(s) 318, 1509
BsaJI CCNNGG 3 cut(s) 35, 946, 1340
BsaWI WCCGGW 1 cut(s) 1402
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 613, 1216
Bse1I ACTGG 1 cut(s) 1487
Bse8I GATNNNNATC 2 cut(s) 1110, 1383
BseBI CCWGG 1 cut(s) 1341
BseDI CCNNGG 3 cut(s) 35, 946, 1340
BseGI GGATG 7 cut(s) 118, 162, 361, 865, 1006, 1099, 1266
BseJI GATNNNNATC 2 cut(s) 1110, 1383
BseLI CCNNNNNNNGG 3 cut(s) 430, 613, 1216
BseMII CTCAG 4 cut(s) 315, 453, 815, 1511
BseNI ACTGG 1 cut(s) 1487
BseRI GAGGAG 2 cut(s) 89, 1262
BseSI GKGCMC 1 cut(s) 1456
BseXI GCAGC 5 cut(s) 19, 252, 1002, 1536, 1552
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 4 cut(s) 31, 254, 414, 423
BsiHKAI GWGCWC 1 cut(s) 1456
BsiSI CCGG 1 cut(s) 1403
BslI CCNNNNNNNGG 3 cut(s) 430, 613, 1216
BsmAI GTCTC 7 cut(s) 318, 406, 452, 1300, 1404, 1421, 1509
BsnI GGCC 4 cut(s) 31, 254, 414, 423
Bso31I GGTCTC 2 cut(s) 318, 1509
Bsp1286I GDGCHC 2 cut(s) 315, 1456
Bsp143I GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
BspACI CCGC 3 cut(s) 251, 1018, 1443
BspANI GGCC 4 cut(s) 31, 254, 414, 423
BspCNI CTCAG 4 cut(s) 314, 454, 814, 1512
BspHI TCATGA 2 cut(s) 1108, 1387
BspLI GGNNCC 3 cut(s) 422, 468, 1464
BspPI GGATC 2 cut(s) 313, 1106
BspQI GCTCTTC 2 cut(s) 592, 1323
BspTNI GGTCTC 2 cut(s) 318, 1509
BsrBI CCGCTC 1 cut(s) 1020
BsrI ACTGG 1 cut(s) 1487
BssECI CCNNGG 3 cut(s) 35, 946, 1340
BssMI GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
BssSI CACGAG 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 1341
Bst4CI ACNGT 7 cut(s) 131, 224, 283, 370, 497, 571, 925
Bst6I CTCTTC 2 cut(s) 592, 1323
BstAPI GCANNNNNTGC 1 cut(s) 1451
BstC8I GCNNGC 3 cut(s) 387, 658, 1228
BstDEI CTNAG 6 cut(s) 301, 462, 801, 1089, 1297, 1520
BstDSI CCRYGG 1 cut(s) 946
BstF5I GGATG 7 cut(s) 118, 162, 361, 865, 1006, 1099, 1266
BstH2I RGCGCY 1 cut(s) 1181
BstHHI GCGC 1 cut(s) 1180
BstKTI GATC 6 cut(s) 308, 730, 784, 1108, 1114, 1195
BstMAI GTCTC 7 cut(s) 318, 406, 452, 1300, 1404, 1421, 1509
BstMBI GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
BstMWI GCNNNNNNNGC 4 cut(s) 248, 420, 1017, 1451
BstNI CCWGG 1 cut(s) 1341
BstNSI RCATGY 2 cut(s) 595, 692
BstSCI CCNGG 1 cut(s) 1339
BstSFI CTRYAG 2 cut(s) 369, 1422
BstSLI GKGCMC 1 cut(s) 1456
BstV1I GCAGC 5 cut(s) 19, 252, 1002, 1536, 1552
BstV2I GAAGAC 2 cut(s) 371, 1033
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 4 cut(s) 31, 254, 414, 423
BtgI CCRYGG 1 cut(s) 946
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 7 cut(s) 118, 162, 361, 865, 1006, 1099, 1266
BtsI GCAGTG 1 cut(s) 1281
BtsIMutI CAGTG 3 cut(s) 229, 567, 1281
Cac8I GCNNGC 3 cut(s) 387, 658, 1228
CaiI CAGNNNCTG 1 cut(s) 308
CciI TCATGA 2 cut(s) 1108, 1387
CfoI GCGC 1 cut(s) 1180
Cfr13I GGNCC 3 cut(s) 421, 466, 1463
CseI GACGC 1 cut(s) 1546
Csp6I GTAC 2 cut(s) 873, 1546
CspCI CAANNNNNGTGG 2 cut(s) 633, 668
CviQI GTAC 2 cut(s) 873, 1546
DdeI CTNAG 6 cut(s) 301, 462, 801, 1089, 1297, 1520
DpnI GATC 6 cut(s) 307, 729, 783, 1107, 1113, 1194
DpnII GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
DrdI GACNNNNNNGTC 1 cut(s) 1035
DseDI GACNNNNNNGTC 1 cut(s) 1035
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 592, 1323
EarI CTCTTC 2 cut(s) 592, 1323
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 2 cut(s) 318, 1509
Eco32I GATATC 1 cut(s) 1368
Eco47I GGWCC 2 cut(s) 466, 1463
Eco57I CTGAAG 1 cut(s) 201
EcoO109I RGGNCCY 2 cut(s) 466, 1463
EcoRI GAATTC 1 cut(s) 1148
EcoRII CCWGG 1 cut(s) 1339
EcoRV GATATC 1 cut(s) 1368
EcoT14I CCWWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 894
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 35
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FbaI TGATCA 1 cut(s) 1192
Fnu4HI GCNGC 6 cut(s) 8, 252, 266, 991, 1525, 1541
FokI GGATG 7 cut(s) 125, 149, 368, 872, 1013, 1106, 1273
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 6 cut(s) 8, 252, 266, 991, 1525, 1541
FspBI CTAG 2 cut(s) 36, 1236
GlaI GCGC 1 cut(s) 1179
GluI GCNGC 6 cut(s) 8, 252, 266, 991, 1525, 1541
HaeII RGCGCY 1 cut(s) 1181
HaeIII GGCC 4 cut(s) 31, 254, 414, 423
HapII CCGG 1 cut(s) 1403
HgaI GACGC 1 cut(s) 1546
HhaI GCGC 1 cut(s) 1180
Hin6I GCGC 1 cut(s) 1178
HinP1I GCGC 1 cut(s) 1178
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 7 cut(s) 445, 815, 1036, 1079, 1355, 1477, 1510
HpaII CCGG 1 cut(s) 1403
Hpy166II GTNNAC 5 cut(s) 16, 538, 557, 567, 1454
Hpy188I TCNGA 4 cut(s) 508, 727, 1132, 1372
Hpy8I GTNNAC 5 cut(s) 16, 538, 557, 567, 1454
HpyAV CCTTC 4 cut(s) 103, 176, 480, 1062
HpyCH4III ACNGT 7 cut(s) 131, 224, 283, 370, 497, 571, 925
HpyCH4IV ACGT 2 cut(s) 330, 875
HpyCH4V TGCA 5 cut(s) 231, 242, 847, 892, 1454
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 420, 1017, 1451
HpyF3I CTNAG 6 cut(s) 301, 462, 801, 1089, 1297, 1520
HpySE526I ACGT 2 cut(s) 330, 875
HspAI GCGC 1 cut(s) 1178
Ksp22I TGATCA 1 cut(s) 1192
Kzo9I GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
LguI GCTCTTC 2 cut(s) 592, 1323
LmnI GCTCC 3 cut(s) 4, 458, 665
Lsp1109I GCAGC 5 cut(s) 19, 252, 1002, 1536, 1552
LweI GCATC 5 cut(s) 229, 991, 1381, 1442, 1454
MaeI CTAG 2 cut(s) 36, 1236
MaeII ACGT 2 cut(s) 330, 875
MaeIII GTNAC 4 cut(s) 331, 439, 955, 1284
MalI GATC 6 cut(s) 307, 729, 783, 1107, 1113, 1194
MbiI CCGCTC 1 cut(s) 1020
MboI GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
MboII GAAGA 8 cut(s) 376, 609, 957, 1038, 1119, 1265, 1340, 1350
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 2 cut(s) 315, 1456
MluCI AATT 6 cut(s) 408, 549, 620, 645, 1148, 1529
MlyI GAGTC 2 cut(s) 454, 1045
MmeI TCCRAC 1 cut(s) 896
Mph1103I ATGCAT 1 cut(s) 894
MseI TTAA 5 cut(s) 123, 407, 521, 648, 1499
MslI CAYNNNNRTG 3 cut(s) 340, 951, 1167
MspA1I CMGCKG 2 cut(s) 1495, 1543
MspI CCGG 1 cut(s) 1403
MspR9I CCNGG 1 cut(s) 1341
MvaI CCWGG 1 cut(s) 1341
MwoI GCNNNNNNNGC 4 cut(s) 248, 420, 1017, 1451
NdeII GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
NlaIV GGNNCC 3 cut(s) 422, 468, 1464
NmuCI GTSAC 3 cut(s) 331, 439, 1284
NsiI ATGCAT 1 cut(s) 894
NspI RCATGY 2 cut(s) 595, 692
OliI CACNNNNGTG 1 cut(s) 951
PagI TCATGA 2 cut(s) 1108, 1387
PciSI GCTCTTC 2 cut(s) 592, 1323
PfeI GAWTC 5 cut(s) 815, 1079, 1355, 1477, 1510
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 6 cut(s) 9, 253, 267, 992, 1526, 1542
PleI GAGTC 2 cut(s) 453, 1044
PpsI GAGTC 2 cut(s) 453, 1044
PpuMI RGGWCCY 2 cut(s) 466, 1463
Psp5II RGGWCCY 2 cut(s) 466, 1463
Psp6I CCWGG 1 cut(s) 1339
PspGI CCWGG 1 cut(s) 1339
PspN4I GGNNCC 3 cut(s) 422, 468, 1464
PspPI GGNCC 3 cut(s) 421, 466, 1463
PspPPI RGGWCCY 2 cut(s) 466, 1463
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 329
PvuII CAGCTG 2 cut(s) 1495, 1543
RsaI GTAC 2 cut(s) 874, 1547
RsaNI GTAC 2 cut(s) 873, 1546
RseI CAYNNNNRTG 3 cut(s) 340, 951, 1167
SapI GCTCTTC 2 cut(s) 592, 1323
SaqAI TTAA 5 cut(s) 123, 407, 521, 648, 1499
SatI GCNGC 6 cut(s) 8, 252, 266, 991, 1525, 1541
Sau3AI GATC 6 cut(s) 305, 727, 781, 1105, 1111, 1192
Sau96I GGNCC 3 cut(s) 421, 466, 1463
SchI GAGTC 2 cut(s) 454, 1045
ScrFI CCNGG 1 cut(s) 1341
SduI GDGCHC 2 cut(s) 315, 1456
SfaNI GCATC 5 cut(s) 229, 991, 1381, 1442, 1454
SfcI CTRYAG 2 cut(s) 369, 1422
SfiI GGCCNNNNNGGCC 1 cut(s) 420
SinI GGWCC 2 cut(s) 466, 1463
SmiMI CAYNNNNRTG 3 cut(s) 340, 951, 1167
SmlI CTYRAG 4 cut(s) 86, 146, 1021, 1214
SmoI CTYRAG 4 cut(s) 86, 146, 1021, 1214
Sse9I AATT 6 cut(s) 408, 549, 620, 645, 1148, 1529
SsiI CCGC 3 cut(s) 251, 1018, 1443
SspI AATATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 36, 1236
StyD4I CCNGG 1 cut(s) 1339
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 7 cut(s) 131, 224, 283, 370, 497, 571, 925
TaiI ACGT 2 cut(s) 333, 878
TaqI TCGA 6 cut(s) 882, 1039, 1104, 1468, 1505, 1513
TasI AATT 6 cut(s) 408, 549, 620, 645, 1148, 1529
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 5 cut(s) 815, 1079, 1355, 1477, 1510
Tru1I TTAA 5 cut(s) 123, 407, 521, 648, 1499
Tru9I TTAA 5 cut(s) 123, 407, 521, 648, 1499
TscAI CASTG 3 cut(s) 229, 574, 1281
TseFI GTSAC 3 cut(s) 331, 439, 1284
TseI GCWGC 5 cut(s) 7, 265, 990, 1524, 1540
Tsp45I GTSAC 3 cut(s) 331, 439, 1284
TspDTI ATGAA 4 cut(s) 10, 70, 363, 1255
TspGWI ACGGA 1 cut(s) 963
TspRI CASTG 3 cut(s) 229, 574, 1281
Tth111I GACNNNGTC 1 cut(s) 329
VneI GTGCAC 1 cut(s) 1452
VpaK11BI GGWCC 2 cut(s) 466, 1463
XapI RAATTY 4 cut(s) 549, 620, 1148, 1529
XceI RCATGY 2 cut(s) 595, 692
XmaJI CCTAGG 1 cut(s) 35
XspI CTAG 2 cut(s) 36, 1236
Zsp2I ATGCAT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.