Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003389

Physical Location & Seq

Genomic Coordinates Forward (+)

11451273 .. 11452429

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09480.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCTCCTATCAAGATCAAACTCGTACAAGGGTTCCATCGACAGAACCTGCATCACAAATCCTGTATCCATAATGGATGGGAGCTTCGGGCCATCTAGCCAAAACGATACATCAGAAACCACAGTAACAATGGTAAAAAACCCTGCAAGCAATGTCATGGATGGTTTGACACGTCGTGACTCTTTTCCTTCCTTGATTTTTTTCATTTTCTCCGTAGACAATATGATTGTATTTGAAAACCCGAACCGGAAAACGGAAAAGAATAGAAGGATTGTTGTGAAAAATTGTGTTGATTTTAGTTGTAACATAAAAAATAAAATAAAAAAAGGATGTGATATCCACACATCCCATTTTGCTTCTCACACACCTTTTTTATTTTCGGCCTATCAGGGGTGTGTGAGAAGTAAAATGGGGTGTGTGGATAGCACATCCCAAAAAAAAAAAATGGTTTCTTCTGATTATTTTGTTTTTCTTGGTGTTCTGATGTGGAAATTATCTTTCAATATCTTCCTGTCACATGTACCACGTATAATTTTAAACAACCTATTGGTTGGTGAGCAGAATCAGGACTTCAGGTGTAAGGGTGAATTAAGTAGAAATTTGAATGTTGATAATTCGTGTAAATATAATCGCATTTACAGTTTAATTTACATGTGTTTAAGTGAATTTGATGAACTTAGAAGGCAAACATGTTTACAAGATTATTTTGATTTCCACGTATGTAATGAATTTGATGAATACTGCATCATGCTGCTTCATTCCATCCTTCAGCTAGCAACCCCAAAGCAGTCTTTACCAGCGAATGGATTGTCGTGCTGTGCCGGCTCATTCCTACGGTACCAGAGAAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

285

Amino Acids

32.52

Weight (kDa)

8.85

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23540 AT3G23540 AT3G23540 AT4G14290 AT4G14290 AT4G14290 AT4G14290 AT4G14290
fragaria_vesca	FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200
malus_domestica	MD13G1180700.v1.1 MD16G1181400.v1.1
prunus_persica	Prupe.1G148800_v2.0.a1 Prupe.1G148800_v2.0.a1
pyrus_communis	pycom12g09460 pycom12g09470 pycom12g09480 pycom13g15590 pycom16g15220
rosa_chinensis	RchiOBHm_Chr4g0419001
rosa_laevigata	RLG00000007834
rosa_multiflora	Rmu_sc0010159.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362060
rosa_rugosa	Rorug04G0156000 Rorug04G0156000 Rorug04G0156000 Rorug04G0156100
rosa_samantha	Rh4AG217800 Rh4BG212400 Rh4DG216400
rosa_wichuraiana	Rw4G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
Acc65I	GGTACC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	837
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	598, 665, 728
AcuI	CTGAAG	2 cut(s)	556, 752
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	26, 522, 839
AfiI	CCNNNNNNNGG	3 cut(s)	253, 390, 803
AflIII	ACRYGT	4 cut(s)	170, 517, 651, 689
AgsI	TTSAA	3 cut(s)	236, 502, 604
AjiI	CACGTC	1 cut(s)	173
AluBI	AGCT	2 cut(s)	84, 772
AluI	AGCT	2 cut(s)	84, 772
AlwNI	CAGNNNCTG	1 cut(s)	48
AoxI	GGCC	2 cut(s)	89, 381
ApeKI	GCWGC	1 cut(s)	751
ApoI	RAATTY	3 cut(s)	598, 665, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
Asp718I	GGTACC	1 cut(s)	837
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	566, 596
AsuNHI	GCTAGC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	837
BbvI	GCAGC	1 cut(s)	738
BccI	CCATC	5 cut(s)	44, 71, 100, 155, 770
BciVI	GTATCC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	96, 773
BfuAI	ACCTGC	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	752
BlsI	GCNGC	1 cut(s)	753
BmgBI	CACGTC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	34, 839
BmsI	GCATC	2 cut(s)	60, 753
BmtI	GCTAGC	1 cut(s)	776
BsaAI	YACGTR	2 cut(s)	527, 718
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 390, 803
Bse118I	RCCGGY	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	157
BseGI	GGATG	6 cut(s)	82, 166, 335, 344, 428, 762
BseLI	CCNNNNNNNGG	3 cut(s)	253, 390, 803
BseMI	GCAATG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	738
BshFI	GGCC	2 cut(s)	91, 383
BshNI	GGYRCC	1 cut(s)	837
BsiSI	CCGG	2 cut(s)	247, 822
BslI	CCNNNNNNNGG	3 cut(s)	253, 390, 803
BsnI	GGCC	2 cut(s)	91, 383
Bsp143I	GATC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	91, 383
BspLI	GGNNCC	2 cut(s)	34, 839
BspMI	ACCTGC	1 cut(s)	56
BspOI	GCTAGC	1 cut(s)	776
BspT107I	GGYRCC	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	821
BssAI	RCCGGY	1 cut(s)	821
BssMI	GATC	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	124, 641, 837
BstBAI	YACGTR	2 cut(s)	527, 718
BstC8I	GCNNGC	3 cut(s)	148, 774, 823
BstDEI	CTNAG	1 cut(s)	677
BstF5I	GGATG	6 cut(s)	82, 166, 335, 344, 428, 762
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	822
BstNSI	RCATGY	3 cut(s)	521, 655, 693
BstV1I	GCAGC	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	91, 383
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	6 cut(s)	82, 166, 335, 344, 428, 762
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	3 cut(s)	148, 774, 823
CaiI	CAGNNNCTG	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	25, 521, 838
CviAII	CATG	5 cut(s)	157, 518, 652, 690, 748
CviJI	RGCY	6 cut(s)	84, 91, 99, 383, 772, 825
CviKI_1	RGCY	6 cut(s)	84, 91, 99, 383, 772, 825
CviQI	GTAC	3 cut(s)	25, 521, 838
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
DraI	TTTAAA	1 cut(s)	537
DraIII	CACNNNGTG	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	556, 752
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	5 cut(s)	160, 521, 655, 693, 751
FatI	CATG	5 cut(s)	156, 517, 651, 689, 747
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	752
FokI	GGATG	6 cut(s)	89, 173, 331, 342, 415, 749
Fsp4HI	GCNGC	1 cut(s)	752
FspBI	CTAG	2 cut(s)	96, 773
GluI	GCNGC	1 cut(s)	752
HaeIII	GGCC	2 cut(s)	91, 383
HapII	CCGG	2 cut(s)	247, 822
Hin1II	CATG	5 cut(s)	160, 521, 655, 693, 751
HinfI	GANTC	2 cut(s)	179, 562
HpaII	CCGG	2 cut(s)	247, 822
HphI	GGTGA	2 cut(s)	566, 596
Hpy166II	GTNNAC	2 cut(s)	217, 695
Hpy188I	TCNGA	3 cut(s)	115, 457, 483
Hpy188III	TCNNGA	3 cut(s)	12, 176, 566
Hpy8I	GTNNAC	2 cut(s)	217, 695
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	4 cut(s)	198, 261, 675, 776
HpyCH4III	ACNGT	3 cut(s)	124, 641, 837
HpyCH4IV	ACGT	3 cut(s)	172, 526, 717
HpyCH4V	TGCA	3 cut(s)	51, 146, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	822
HpyF3I	CTNAG	1 cut(s)	677
HpySE526I	ACGT	3 cut(s)	172, 526, 717
Hsp92II	CATG	5 cut(s)	160, 521, 655, 693, 751
KpnI	GGTACC	1 cut(s)	841
KroI	GCCGGC	1 cut(s)	821
KroNI	GCCGGC	1 cut(s)	823
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	9, 81
Lsp1109I	GCAGC	1 cut(s)	738
LweI	GCATC	2 cut(s)	60, 753
MaeI	CTAG	2 cut(s)	96, 773
MaeII	ACGT	3 cut(s)	172, 526, 717
MaeIII	GTNAC	4 cut(s)	124, 176, 302, 513
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	444, 499
MluCI	AATT	9 cut(s)	283, 491, 531, 587, 598, 613, 645, 665, 728
MlyI	GAGTC	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	821
MseI	TTAA	4 cut(s)	536, 590, 644, 659
MspI	CCGG	2 cut(s)	247, 822
MwoI	GCNNNNNNNGC	1 cut(s)	822
NaeI	GCCGGC	1 cut(s)	823
NdeII	GATC	1 cut(s)	14
NgoMIV	GCCGGC	1 cut(s)	821
NheI	GCTAGC	1 cut(s)	772
NlaIII	CATG	5 cut(s)	160, 521, 655, 693, 751
NlaIV	GGNNCC	2 cut(s)	34, 839
NmuCI	GTSAC	2 cut(s)	176, 513
NspI	RCATGY	3 cut(s)	521, 655, 693
PciI	ACATGT	3 cut(s)	517, 651, 689
PdiI	GCCGGC	1 cut(s)	823
PfeI	GAWTC	1 cut(s)	562
PflMI	CCANNNNNTGG	1 cut(s)	803
PkrI	GCNGC	1 cut(s)	753
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	2 cut(s)	527, 718
PscI	ACATGT	3 cut(s)	517, 651, 689
PspN4I	GGNNCC	2 cut(s)	34, 839
PspPI	GGNCC	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	48
RsaI	GTAC	3 cut(s)	26, 522, 839
RsaNI	GTAC	3 cut(s)	25, 521, 838
SaqAI	TTAA	4 cut(s)	536, 590, 644, 659
SatI	GCNGC	1 cut(s)	752
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	173
SetI	ASST	9 cut(s)	50, 86, 175, 370, 529, 546, 578, 720, 774
SfaNI	GCATC	2 cut(s)	60, 753
Sse9I	AATT	9 cut(s)	283, 491, 531, 587, 598, 613, 645, 665, 728
SspMI	CTAG	2 cut(s)	96, 773
TaaI	ACNGT	3 cut(s)	124, 641, 837
TaiI	ACGT	3 cut(s)	175, 529, 720
TaqI	TCGA	1 cut(s)	39
TasI	AATT	9 cut(s)	283, 491, 531, 587, 598, 613, 645, 665, 728
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	4 cut(s)	536, 590, 644, 659
Tru9I	TTAA	4 cut(s)	536, 590, 644, 659
TseFI	GTSAC	2 cut(s)	176, 513
TseI	GCWGC	1 cut(s)	751
Tsp45I	GTSAC	2 cut(s)	176, 513
TspDTI	ATGAA	5 cut(s)	193, 687, 741, 746, 750
TspGWI	ACGGA	2 cut(s)	202, 269
Van91I	CCANNNNNTGG	1 cut(s)	803
XapI	RAATTY	3 cut(s)	598, 665, 728
XceI	RCATGY	3 cut(s)	521, 655, 693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	2 cut(s)	96, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.