AT3G23740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011107
Physical Location & Seq
Reverse (-)
8551772 .. 8554839
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23740.1

Sequence Viewer

Length: 1701 bp
ATGGCGGAATCAAATCAAATCCCTCGGAAGAGAATGCGATTCTCGTCTTCTCCAGCTACAGAGATCCTCCCTCAAAGAAAATCACAAAACCAACGAATCGCAACCACCGTATCTCAAAGCAGAAACCGATCTAGCGTCCATCATTCACCATCACTCTATCAAAAAATCGATTCTAAAATCACACCTACGTATCCACGAGCCACCATCAAAGATATTCGTCTCCGACGCGTCTTCTCTCCAACTCCGATCTCCACCGACTGCGAATGTAACTGCAAAGATAAAAATCAAACCAAGAGACAAAATCATGAATGTCTATGCGACTGTGACAATTCAAACAGTGATGATTTTGCACAAACGACGCCACCAGATTCCGAATTGTTAGCTATCAGTGAAGAGATCAATGGATCAGTAGTGAACAAAAGTGATACTAATCTCTGGAGAAAATCGGTTCTTCTTCCATGTTCTCGACCTAAGATATTCAAGAATACTGGTCCTTTCAGCTATAAGAGACTGCTTCCATACTTGATGCAAGCTTCAGATGATGGAACATCATCATCAAGCCGGTGCTCAAAGTCTTTGAGTCAGAACATCACTAAACCGGTTTCGCAGTCTATGGACAGTGTCTATGATAAAGATTCAACCGGAAGCTTCTGTAGAGACACCAGCCCTTTGAAGAGTGTTATTGCATCCACCCCTAACAAAAATGCTGCATTCTCTAGGGGTAAGCTATTTAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGAGGATAATCCTTATCCTCAAAAGAACACAGAGGAGGTTATTTCATCACCGATGTTAAACTCTGAGTCTGATAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATCAGGTACAAGCTCTGATGAAAACGAAGAGCCCCTTCCTTGTGAACGTGTACCTGTAAATCTAGAACAGTCTGATCCTGACAAGGAACAAGAAACACAGATTAAGCATGTCATCCCAGATACTGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTCAAGTGAAGTTAATTCATCTGCATTGCACAACACATTTGTAGACAATTTGGTGGGCGAAGAAAACATGAATGGTGCAGAGATAACAGAAGCAAAGATCAGTGCAGAGGAACTAGAGGCACATAGTTCAGATGCAACAGCTGAACTGGTTGACCCTTCTGTTATATTGGCAACTCCTTCCTCCTTTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCTCTTGTTTGAACTGCTCCTCCTTCCGTCTACACGCCGAAAGAGCATTTGAATTCTCAAGAAATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCAGGGATTTGTTGGAGAAATATAATTCAGCAGATCACAGTGAACCCTACAAAAGTCAGGCTGGTGAAGCTTCGAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGCCTCCACCAGATGAACGATGACCTTCAAATTCACTACAGAATCCCCAACGAACAACGAGCAAGAGTGAAATTTGCTCATTATATACACGAGAAGACGATTGTAAAAGCATCCGAACCTAACAAATTGATCAGTAGATCACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

566

Amino Acids

63.1

Weight (kDa)

6.28

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23740 AT4G14120
fragaria_vesca FvH4_4g12980 FvH4_4g12980 FvH4_4g12980 FvH4_4g12980
malus_domestica MD04G1019900.v1.1
prunus_persica Prupe.1G169400_v2.0.a1
pyrus_communis pycom04g01590
rosa_chinensis RchiOBHm_Chr4g0412661
rosa_laevigata RLG00000008269
rosa_multiflora Rmu_co8037358.1_g000001 Rmu_sc0001238.1_g000004
rosa_roxburghii Rroxscaffold_5G00356860
rosa_rugosa Rorug04G0115700
rosa_samantha Rh4AG174900 Rh4BG174300 Rh4CG185800 Rh4DG170800
rosa_wichuraiana Rw4G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1128, 1354
AccII CGCG 1 cut(s) 228
AciI CCGC 2 cut(s) 5, 1555
AclWI GGATC 5 cut(s) 58, 412, 974, 1045, 1428
AcsI RAATTY 4 cut(s) 1287, 1376, 1584, 1625
AcuI CTGAAG 2 cut(s) 519, 1425
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 2 cut(s) 913, 957
AfiI CCNNNNNNNGG 2 cut(s) 1073, 1283
AflIII ACRYGT 2 cut(s) 226, 952
AgeI ACCGGT 1 cut(s) 598
AjnI CCWGG 1 cut(s) 739
AloI GAACNNNNNNTCC 2 cut(s) 1328, 1360
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 4 cut(s) 224, 289, 502, 651
AlwI GGATC 5 cut(s) 58, 412, 974, 1045, 1428
AlwNI CAGNNNCTG 2 cut(s) 746, 1028
ApeKI GCWGC 2 cut(s) 707, 1535
ApoI RAATTY 4 cut(s) 1287, 1376, 1584, 1625
AsiGI ACCGGT 1 cut(s) 598
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 5 cut(s) 138, 828, 895, 1520, 1686
AsuII TTCGAA 1 cut(s) 1517
AvaII GGWCC 1 cut(s) 491
BaeI ACNNNNGTAYC 6 cut(s) 93, 126, 173, 206, 1392, 1425
BanII GRGCYC 2 cut(s) 939, 1046
BauI CACGAG 2 cut(s) 195, 1643
BbsI GAAGAC 3 cut(s) 39, 223, 1655
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 2 cut(s) 694, 1522
BccI CCATC 4 cut(s) 147, 157, 212, 536
BciT130I CCWGG 1 cut(s) 741
BciVI GTATCC 1 cut(s) 201
BclI TGATCA 1 cut(s) 1683
BcoDI GTCTC 4 cut(s) 224, 289, 502, 651
BfaI CTAG 6 cut(s) 132, 717, 900, 968, 1199, 1424
BfmI CTRYAG 4 cut(s) 57, 652, 1536, 1591
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 3 cut(s) 708, 1536, 1555
BlsI GCNGC 3 cut(s) 709, 1537, 1556
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 4 cut(s) 516, 695, 1207, 1673
BpiI GAAGAC 3 cut(s) 39, 223, 1655
BpmI CTGGAG 2 cut(s) 36, 457
Bpu14I TTCGAA 1 cut(s) 1517
BpuEI CTTGAG 1 cut(s) 1366
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 189
BsaBI GATNNNNATC 2 cut(s) 282, 429
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 2 cut(s) 598, 641
BsaXI ACNNNNNCTCC 2 cut(s) 1328, 1358
Bsc4I CCNNNNNNNGG 2 cut(s) 1073, 1283
Bse118I RCCGGY 2 cut(s) 561, 598
Bse1I ACTGG 2 cut(s) 493, 1236
Bse3DI GCAATG 1 cut(s) 1109
Bse8I GATNNNNATC 2 cut(s) 282, 429
BseBI CCWGG 1 cut(s) 741
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 4 cut(s) 686, 1017, 1316, 1664
BseJI GATNNNNATC 2 cut(s) 282, 429
BseLI CCNNNNNNNGG 2 cut(s) 1073, 1283
BseMI GCAATG 1 cut(s) 1109
BseMII CTCAG 3 cut(s) 843, 1038, 1459
BseNI ACTGG 2 cut(s) 493, 1236
BseRI GAGGAG 3 cut(s) 836, 1056, 1333
BseXI GCAGC 2 cut(s) 694, 1522
BsgI GTGCAG 2 cut(s) 1182, 1209
Bsh1236I CGCG 1 cut(s) 228
BshTI ACCGGT 1 cut(s) 598
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 569
BsiSI CCGG 3 cut(s) 562, 599, 642
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 2 cut(s) 1073, 1283
BsmAI GTCTC 4 cut(s) 224, 289, 502, 651
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 883
BsmI GAATGC 3 cut(s) 39, 710, 768
Bsp119I TTCGAA 1 cut(s) 1517
Bsp1286I GDGCHC 3 cut(s) 569, 939, 1046
BspACI CCGC 2 cut(s) 5, 1555
BspCNI CTCAG 3 cut(s) 844, 1039, 1458
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 1540
BspPI GGATC 5 cut(s) 58, 412, 974, 1045, 1428
BspQI GCTCTTC 1 cut(s) 927
BspT104I TTCGAA 1 cut(s) 1517
BsrDI GCAATG 1 cut(s) 1109
BsrFI RCCGGY 2 cut(s) 561, 598
BsrI ACTGG 2 cut(s) 493, 1236
BssAI RCCGGY 2 cut(s) 561, 598
BssECI CCNNGG 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 359
BssSI CACGAG 2 cut(s) 195, 1643
Bst2BI CACGAG 2 cut(s) 195, 1643
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 6 cut(s) 109, 323, 338, 620, 975, 1484
Bst6I CTCTTC 5 cut(s) 23, 387, 668, 927, 1514
BstACI GRCGYC 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 1544
BstBAI YACGTR 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 1517
BstC8I GCNNGC 2 cut(s) 531, 1545
BstDEI CTNAG 4 cut(s) 471, 852, 1047, 1445
BstF5I GGATG 4 cut(s) 686, 1017, 1316, 1664
BstFNI CGCG 1 cut(s) 228
BstMAI GTCTC 4 cut(s) 224, 289, 502, 651
BstMWI GCNNNNNNNGC 4 cut(s) 1367, 1511, 1532, 1544
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 1016
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 4 cut(s) 57, 652, 1536, 1591
BstSNI TACGTA 1 cut(s) 189
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 694, 1522
BstV2I GAAGAC 3 cut(s) 39, 223, 1655
BstX2I RGATCY 3 cut(s) 63, 1050, 1420
BstYI RGATCY 3 cut(s) 63, 1050, 1420
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 4 cut(s) 686, 1017, 1316, 1664
BtsIMutI CAGTG 5 cut(s) 343, 394, 625, 1192, 1489
Cac8I GCNNGC 2 cut(s) 531, 1545
CaiI CAGNNNCTG 2 cut(s) 746, 1028
CciI TCATGA 1 cut(s) 304
Cfr10I RCCGGY 2 cut(s) 561, 598
Cfr13I GGNCC 1 cut(s) 491
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 4 cut(s) 124, 217, 234, 367
CsiI ACCWGGT 1 cut(s) 739
Csp6I GTAC 2 cut(s) 912, 956
CspAI ACCGGT 1 cut(s) 598
CviAII CATG 4 cut(s) 305, 459, 1013, 1153
CviQI GTAC 2 cut(s) 912, 956
DdeI CTNAG 4 cut(s) 471, 852, 1047, 1445
Eam1104I CTCTTC 5 cut(s) 23, 387, 668, 927, 1514
EarI CTCTTC 5 cut(s) 23, 387, 668, 927, 1514
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 189
Eco24I GRGCYC 2 cut(s) 939, 1046
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 519, 1425
EcoRI GAATTC 2 cut(s) 1287, 1376
EcoRII CCWGG 1 cut(s) 739
EcoT38I GRGCYC 2 cut(s) 939, 1046
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 4 cut(s) 308, 462, 1016, 1156
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 1 cut(s) 883
FatI CATG 4 cut(s) 304, 458, 1012, 1152
FbaI TGATCA 1 cut(s) 1683
FblI GTMKAC 2 cut(s) 1128, 1354
Fnu4HI GCNGC 3 cut(s) 708, 1536, 1555
FokI GGATG 4 cut(s) 673, 1004, 1323, 1651
FriOI GRGCYC 2 cut(s) 939, 1046
Fsp4HI GCNGC 3 cut(s) 708, 1536, 1555
FspBI CTAG 6 cut(s) 132, 717, 900, 968, 1199, 1424
GluI GCNGC 3 cut(s) 708, 1536, 1555
GsuI CTGGAG 2 cut(s) 36, 457
HapII CCGG 3 cut(s) 562, 599, 642
HgaI GACGC 4 cut(s) 124, 217, 234, 367
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 4 cut(s) 308, 462, 1016, 1156
HincII GTYRAC 1 cut(s) 1237
HindII GTYRAC 1 cut(s) 1237
HindIII AAGCTT 3 cut(s) 531, 646, 1512
HpaII CCGG 3 cut(s) 562, 599, 642
HphI GGTGA 5 cut(s) 138, 828, 895, 1520, 1686
Hpy166II GTNNAC 7 cut(s) 415, 950, 956, 1129, 1237, 1355, 1487
Hpy188III TCNNGA 9 cut(s) 305, 436, 465, 481, 788, 968, 983, 1080, 1383
Hpy8I GTNNAC 7 cut(s) 415, 950, 956, 1129, 1237, 1355, 1487
Hpy99I CGWCG 2 cut(s) 228, 361
HpyAV CCTTC 6 cut(s) 860, 950, 1251, 1272, 1357, 1589
HpyCH4III ACNGT 6 cut(s) 109, 323, 338, 620, 975, 1484
HpyCH4IV ACGT 2 cut(s) 188, 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 1367, 1511, 1532, 1544
HpyF3I CTNAG 4 cut(s) 471, 852, 1047, 1445
HpySE526I ACGT 2 cut(s) 188, 952
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 4 cut(s) 308, 462, 1016, 1156
Ksp22I TGATCA 1 cut(s) 1683
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 1 cut(s) 1346
Lsp1109I GCAGC 2 cut(s) 694, 1522
LweI GCATC 4 cut(s) 516, 695, 1207, 1673
MabI ACCWGGT 1 cut(s) 739
MaeI CTAG 6 cut(s) 132, 717, 900, 968, 1199, 1424
MaeII ACGT 2 cut(s) 188, 952
MaeIII GTNAC 5 cut(s) 266, 323, 883, 895, 1392
MflI RGATCY 3 cut(s) 63, 1050, 1420
MhlI GDGCHC 3 cut(s) 569, 939, 1046
MluI ACGCGT 1 cut(s) 226
MlyI GAGTC 2 cut(s) 589, 863
MmeI TCCRAC 4 cut(s) 247, 263, 1408, 1437
MseI TTAA 5 cut(s) 732, 750, 845, 1008, 1098
MspA1I CMGCKG 1 cut(s) 1226
MspI CCGG 3 cut(s) 562, 599, 642
MspR9I CCNGG 1 cut(s) 741
Mva1269I GAATGC 3 cut(s) 39, 710, 768
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 1367, 1511, 1532, 1544
NlaIII CATG 4 cut(s) 308, 462, 1016, 1156
NmuCI GTSAC 2 cut(s) 323, 883
NspI RCATGY 1 cut(s) 1016
NspV TTCGAA 1 cut(s) 1517
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 3 cut(s) 39, 710, 768
PfeI GAWTC 8 cut(s) 8, 39, 96, 170, 368, 635, 905, 1596
PflFI GACNNNGTC 1 cut(s) 620
PinAI ACCGGT 1 cut(s) 598
PkrI GCNGC 3 cut(s) 709, 1537, 1556
PleI GAGTC 2 cut(s) 588, 862
PpsI GAGTC 2 cut(s) 588, 862
Ppu21I YACGTR 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 739
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 1540
PstNI CAGNNNCTG 2 cut(s) 746, 1028
PsuI RGATCY 3 cut(s) 63, 1050, 1420
PsyI GACNNNGTC 1 cut(s) 620
PvuII CAGCTG 1 cut(s) 1226
RsaI GTAC 2 cut(s) 913, 957
RsaNI GTAC 2 cut(s) 912, 956
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 732, 750, 845, 1008, 1098
SatI GCNGC 3 cut(s) 708, 1536, 1555
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 2 cut(s) 589, 863
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 3 cut(s) 569, 939, 1046
SexAI ACCWGGT 1 cut(s) 739
SfaNI GCATC 4 cut(s) 516, 695, 1207, 1673
SfcI CTRYAG 4 cut(s) 57, 652, 1536, 1591
SfuI TTCGAA 1 cut(s) 1517
SinI GGWCC 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 1381
SmoI CTYRAG 1 cut(s) 1381
SnaBI TACGTA 1 cut(s) 189
SsiI CCGC 2 cut(s) 5, 1555
SspMI CTAG 6 cut(s) 132, 717, 900, 968, 1199, 1424
StyD4I CCNGG 1 cut(s) 739
TaaI ACNGT 6 cut(s) 109, 323, 338, 620, 975, 1484
TaiI ACGT 2 cut(s) 191, 955
TaqI TCGA 4 cut(s) 168, 466, 1280, 1517
TauI GCSGC 1 cut(s) 1557
TfiI GAWTC 8 cut(s) 8, 39, 96, 170, 368, 635, 905, 1596
Tru1I TTAA 5 cut(s) 732, 750, 845, 1008, 1098
Tru9I TTAA 5 cut(s) 732, 750, 845, 1008, 1098
TscAI CASTG 5 cut(s) 343, 394, 625, 1192, 1489
TseFI GTSAC 2 cut(s) 323, 883
TseI GCWGC 2 cut(s) 707, 1535
Tsp45I GTSAC 2 cut(s) 323, 883
TspDTI ATGAA 7 cut(s) 321, 822, 879, 939, 1092, 1169, 1583
TspGWI ACGGA 1 cut(s) 1340
TspRI CASTG 5 cut(s) 343, 394, 625, 1192, 1489
Tth111I GACNNNGTC 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 4 cut(s) 1287, 1376, 1584, 1625
XbaI TCTAGA 1 cut(s) 967
XceI RCATGY 1 cut(s) 1016
XmiI GTMKAC 2 cut(s) 1128, 1354
XspI CTAG 6 cut(s) 132, 717, 900, 968, 1199, 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.