Rorug04G0115700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011107
Physical Location & Seq
Reverse (-)
18182860 .. 18195630
12771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0115700.1

Sequence Viewer

Length: 1965 bp
ATGAAGAAGGGAAGAAAGAGGATATCTGAGCAGGAGCGGCTTATCCGTCATCTGGAGCCCTTGAAGAACCTTTGTCTGGACGATATTGTGAACCGACTTCGCTCTACGTACCCATCTTTTTACCAACGCATCAAGCTCCCTATTTTCACCACGAAAGTCGAGAAAACCCTAGCGTCGCTTTCCGTTAAGCAGCAGTCAATGGCCAAACAACCGCGTATCAGAAGCATAGAACAAGAAGAAGAAGAAGAAATTGGTCAAGGAAATTTCCACAAAAGGCGTCGGCTGAACTATGCTGCCAGTGAGAGCGAGGAGGATTCAGGCGATCGAGGAGGATTCGGGCAAGGAGGATCCGGGCTTGGCCGTCTGCTGCTTGGAGTACGCCATACCCAACATACCCAACAACATGTTGAGTGGGATGGAGAAGCGCAAAACGAGCTGGAGAGGTTTGTGATGTTGCCATTTCGACATCCGGAGCTGGCGATATCGCTTGGAGTCAAGCCAGTATCTGGGGTTCTCTTGCACGGACCACCAGGTTCATCCGAAGAGAATATACGAGACCTTTTTTCCAAAGCTTATAGAACGGCCCCTTCAATTGTATTTATTGACGAAATTGATGCAATCGCTACAAAAAGAGAGGATGTGCAACGTGCAATGGAGGGGCGGATCGTGACACAACTCATGACTTCGATGGATGAATCTCACAGACCTACTGTATTACCAGCTGCTCATGATGATCCAAATTCCAACTCGCAATCTTCAGATCAGAAATATCCCCGTGTTCTCGTCATTGGAGCTACCAATAGGCCTGATGTTATTGACTCTGCTCTAAGGAGGCCTGGACGCTTTGAACTTGAGATTTTTTTAGGCCCTCCAGATGAAAGTGCGAGGCTCCAGATTCTCTCTTTGCTCACTCGCAATCTCACATTACAAAGTGGTTCCTTTGATCTTCTCAAAATAGCCAGGTCTACCTCCGGGTTTGTCGGAGCTGATTTGACCGCCTTGGTCAACAGGGCTGGTTCCATTGCACTGGAAAGGATCGTAAACAACATGGTTGCTGCTGATGTCTCCATTCATTCTGCGTCTCCCAAGTGCAATCAAGATTCTGGGCCTCAAGTACTCACTATGGCTGATTTTGAGGACACAGTTAAAGCAGTCCAACCCTCCTTAAAAAGAGAAGGATTCGCTGCAATACCTAATGTGAAATGGGAAGACGTTGGCGGCCTAGATTCTTTAAGGGAGGACCTTTACCGTTCCATAGTTAGGCGTATTAAACATCCAGACATCTATAAGAATTTCGGATTAGATTTAGAGACGGGATTTTTGCTCTACGGGCCTCCAGGATGTGGCAAAACCCTGATTGCAAAGGCTGTTGCAAGTGAGGCAGGAGCTAATTTTAGATACGTCAAGGGTGCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAACTGGCAGTCCGAACCTTGTTTAGCCGTGCAAGGACGTGCTCGCCATGCATTATTTTCTTTGATGAGGTGGATGCTTTGACAACAAAGCGGGGCAGACAAGGGGGATGGGTTGTTGAGCGGCTACTGAACCAGTTACTTGCAGAGTTAGATGGTGGAGATCAGCAACAGGGTGTATTTGGTATTGGTGCTACCAATAGACCTGATGCGATGGATCCTGCTGTTTTACGGCCGGGCAGGTTTGGTAAACATATTTATGTCTCCCTGCCGAGTAGAGATGAGCGCTGTTTGATCCTAAAAGCTCTTGCAAGGAAGAAGCCTATAGATCCCGGTGTAGATCTCAATGAGATCGGTCGATGGAAGGCTCTTGAAAATTTTAGTGGAGCTGATCTCTCTGCAATGATGAATGAAGCTGCTATGGCTGCTCTTGAAGAGGGATCAACATCAACTGATGTGAGTGTGGGTTCATATACACAGACTATTAAGAAGTCCAATCCGTTGCTAAAATCTCACCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

654

Amino Acids

72.35

Weight (kDa)

8.08

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 178 - 289 3.6e-22 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 314 - 350 3.7e-10 AAA+ lid domain
AAA PF00004 441 - 569 2.5e-41 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 593 - 630 2e-08 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23740 AT4G14120
fragaria_vesca FvH4_4g12980 FvH4_4g12980 FvH4_4g12980 FvH4_4g12980
malus_domestica MD04G1019900.v1.1
prunus_persica Prupe.1G169400_v2.0.a1
pyrus_communis pycom04g01590
rosa_chinensis RchiOBHm_Chr4g0412661
rosa_laevigata RLG00000008269
rosa_multiflora Rmu_co8037358.1_g000001 Rmu_sc0001238.1_g000004
rosa_roxburghii Rroxscaffold_5G00356860
rosa_rugosa Rorug04G0115700
rosa_samantha Rh4AG174900 Rh4BG174300 Rh4CG185800 Rh4DG170800
rosa_wichuraiana Rw4G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1671
AccB7I CCANNNNNTGG 2 cut(s) 506, 1343
AccBSI CCGCTC 2 cut(s) 37, 1564
AccI GTMKAC 1 cut(s) 965
AccII CGCG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 7 cut(s) 37, 212, 661, 996, 1218, 1534, 1564
AcoI YGGCCR 3 cut(s) 201, 358, 1673
AcsI RAATTY 4 cut(s) 262, 739, 1291, 1816
AcuI CTGAAG 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 3 cut(s) 110, 378, 1116
AfeI AGCGCT 1 cut(s) 1727
AfiI CCNNNNNNNGG 5 cut(s) 52, 76, 506, 1260, 1343
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 5 cut(s) 64, 591, 848, 1814, 1874
AjiI CACGTC 1 cut(s) 1482
AjnI CCWGG 4 cut(s) 529, 835, 959, 1336
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AloI GAACNNNNNNTCC 2 cut(s) 1437, 1469
Alw21I GWGCWC 1 cut(s) 1487
Alw26I GTCTC 5 cut(s) 549, 1069, 1086, 1304, 1708
AlwNI CAGNNNCTG 1 cut(s) 506
Aor13HI TCCGGA 1 cut(s) 469
Aor51HI AGCGCT 1 cut(s) 1727
ApeKI GCWGC 8 cut(s) 190, 293, 367, 722, 1055, 1184, 1856, 1865
ApoI RAATTY 4 cut(s) 262, 739, 1291, 1816
ArsI GACNNNNNNTTYG 2 cut(s) 1303, 1335
AspLEI GCGC 2 cut(s) 427, 1728
AspS9I GGNCC 6 cut(s) 524, 583, 866, 1106, 1240, 1331
AsuC2I CCSGG 4 cut(s) 352, 973, 1677, 1773
AsuHPI GGTGA 2 cut(s) 139, 1946
AvaII GGWCC 2 cut(s) 524, 1240
BalI TGGCCA 1 cut(s) 203
BamHI GGATCC 2 cut(s) 347, 1657
BanII GRGCYC 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 534, 566
BbsI GAAGAC 1 cut(s) 1215
Bbv12I GWGCWC 1 cut(s) 1487
BbvI GCAGC 8 cut(s) 202, 280, 354, 709, 1042, 1171, 1843, 1852
BccI CCATC 7 cut(s) 121, 410, 682, 1545, 1589, 1648, 1794
BceAI ACGGC 4 cut(s) 345, 597, 1455, 1688
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 4 cut(s) 531, 837, 961, 1338
BcnI CCSGG 4 cut(s) 352, 973, 1677, 1773
BcoDI GTCTC 5 cut(s) 549, 1069, 1086, 1304, 1708
BfaI CTAG 2 cut(s) 170, 1223
BfmI CTRYAG 1 cut(s) 1764
BfoI RGCGCY 1 cut(s) 1729
BfuAI ACCTGC 1 cut(s) 1671
BglII AGATCT 1 cut(s) 1780
BmcAI AGTACT 1 cut(s) 1116
Bme1390I CCNGG 8 cut(s) 352, 531, 837, 961, 973, 1338, 1677, 1773
Bme18I GGWCC 2 cut(s) 524, 1240
BmgBI CACGTC 1 cut(s) 1482
BmgT120I GGNCC 6 cut(s) 524, 583, 866, 1106, 1240, 1331
BmiI GGNNCC 7 cut(s) 57, 349, 585, 890, 937, 1018, 1659
BmrFI CCNGG 8 cut(s) 352, 531, 837, 961, 973, 1338, 1677, 1773
BmsI GCATC 4 cut(s) 138, 604, 1507, 1639
BpiI GAAGAC 1 cut(s) 1215
BplI GAGNNNNNCTC 2 cut(s) 1818, 1850
BpmI CTGGAG 5 cut(s) 74, 458, 855, 875, 1320
BpuEI CTTGAG 2 cut(s) 872, 1095
BpuMI CCSGG 4 cut(s) 352, 973, 1677, 1773
BsaAI YACGTR 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 1885
BsaHI GRCGYC 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 549
BsaJI CCNNGG 1 cut(s) 999
BsaWI WCCGGW 1 cut(s) 469
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 76, 506, 1260, 1343
Bse1I ACTGG 5 cut(s) 297, 500, 1032, 1452, 1576
Bse3DI GCAATG 3 cut(s) 657, 1020, 1848
Bse8I GATNNNNATC 1 cut(s) 1885
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 4 cut(s) 531, 837, 961, 1338
BseDI CCNNGG 1 cut(s) 999
BseGI GGATG 9 cut(s) 421, 466, 536, 643, 697, 1273, 1346, 1522, 1556
BseJI GATNNNNATC 1 cut(s) 1885
BseLI CCNNNNNNNGG 5 cut(s) 52, 76, 506, 1260, 1343
BseMI GCAATG 3 cut(s) 657, 1020, 1848
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 5 cut(s) 297, 500, 1032, 1452, 1576
BseRI GAGGAG 2 cut(s) 323, 342
BseX3I CGGCCG 1 cut(s) 1673
BseXI GCAGC 8 cut(s) 202, 280, 354, 709, 1042, 1171, 1843, 1852
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 3 cut(s) 325, 1676, 1798
BsiEI CGRYCG 3 cut(s) 325, 1676, 1798
BsiHKAI GWGCWC 1 cut(s) 1487
BsiSI CCGG 5 cut(s) 351, 470, 972, 1676, 1773
BslI CCNNNNNNNGG 5 cut(s) 52, 76, 506, 1260, 1343
BsmAI GTCTC 5 cut(s) 549, 1069, 1086, 1304, 1708
BsmBI CGTCTC 2 cut(s) 1086, 1304
Bso31I GGTCTC 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 60, 1487
Bsp13I TCCGGA 1 cut(s) 469
BspACI CCGC 7 cut(s) 37, 212, 661, 996, 1218, 1534, 1564
BspCNI CTCAG 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 1 cut(s) 214
BspHI TCATGA 2 cut(s) 678, 727
BspLI GGNNCC 7 cut(s) 57, 349, 585, 890, 937, 1018, 1659
BspMI ACCTGC 1 cut(s) 1671
BspTNI GGTCTC 1 cut(s) 549
BsrBI CCGCTC 2 cut(s) 37, 1564
BsrDI GCAATG 3 cut(s) 657, 1020, 1848
BsrI ACTGG 5 cut(s) 297, 500, 1032, 1452, 1576
BssECI CCNNGG 1 cut(s) 999
BssNI GRCGYC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 999
Bst2UI CCWGG 4 cut(s) 531, 837, 961, 1338
Bst4CI ACNGT 3 cut(s) 712, 1144, 1250
Bst6I CTCTTC 2 cut(s) 537, 1869
BstACI GRCGYC 1 cut(s) 277
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 477, 1487
BstDEI CTNAG 2 cut(s) 27, 827
BstF5I GGATG 9 cut(s) 421, 466, 536, 643, 697, 1273, 1346, 1522, 1556
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 1729
BstHHI GCGC 2 cut(s) 427, 1728
BstMAI GTCTC 5 cut(s) 549, 1069, 1086, 1304, 1708
BstMCI CGRYCG 3 cut(s) 325, 1676, 1798
BstMWI GCNNNNNNNGC 7 cut(s) 37, 433, 1330, 1379, 1491, 1862, 1865
BstNI CCWGG 4 cut(s) 531, 837, 961, 1338
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 8 cut(s) 350, 529, 835, 959, 971, 1336, 1675, 1771
BstSFI CTRYAG 1 cut(s) 1764
BstSNI TACGTA 1 cut(s) 108
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 8 cut(s) 202, 280, 354, 709, 1042, 1171, 1843, 1852
BstV2I GAAGAC 1 cut(s) 1215
BstX2I RGATCY 4 cut(s) 347, 1657, 1768, 1780
BstXI CCANNNNNNTGG 1 cut(s) 1027
BstYI RGATCY 4 cut(s) 347, 1657, 1768, 1780
BstZI CGGCCG 1 cut(s) 1673
BtgZI GCGATG 1 cut(s) 1667
BtrI CACGTC 1 cut(s) 1482
BtsCI GGATG 9 cut(s) 421, 466, 536, 643, 697, 1273, 1346, 1522, 1556
BtsIMutI CAGTG 2 cut(s) 304, 1025
BveI ACCTGC 1 cut(s) 1671
Cac8I GCNNGC 2 cut(s) 477, 1487
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 2 cut(s) 678, 727
CfoI GCGC 2 cut(s) 427, 1728
Cfr13I GGNCC 6 cut(s) 524, 583, 866, 1106, 1240, 1331
CseI GACGC 4 cut(s) 162, 266, 849, 1068
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 3 cut(s) 109, 377, 1115
CviAII CATG 5 cut(s) 404, 679, 728, 1048, 1491
CviQI GTAC 3 cut(s) 109, 377, 1115
DdeI CTNAG 2 cut(s) 27, 827
EaeI YGGCCR 3 cut(s) 201, 358, 1673
EagI CGGCCG 1 cut(s) 1673
Eam1104I CTCTTC 2 cut(s) 537, 1869
EarI CTCTTC 2 cut(s) 537, 1869
EciI GGCGGA 1 cut(s) 676
EclXI CGGCCG 1 cut(s) 1673
Eco105I TACGTA 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 999
Eco147I AGGCCT 2 cut(s) 805, 835
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 549
Eco32I GATATC 2 cut(s) 24, 483
Eco47I GGWCC 2 cut(s) 524, 1240
Eco47III AGCGCT 1 cut(s) 1727
Eco52I CGGCCG 1 cut(s) 1673
Eco57I CTGAAG 1 cut(s) 741
EcoO109I RGGNCCY 2 cut(s) 866, 1240
EcoRII CCWGG 4 cut(s) 529, 835, 959, 1336
EcoRV GATATC 2 cut(s) 24, 483
EcoT14I CCWWGG 1 cut(s) 999
EcoT22I ATGCAT 1 cut(s) 1496
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 999
Esp3I CGTCTC 2 cut(s) 1086, 1304
FaeI CATG 5 cut(s) 407, 682, 731, 1051, 1494
FatI CATG 5 cut(s) 403, 678, 727, 1047, 1490
FauI CCCGC 1 cut(s) 1527
FblI GTMKAC 1 cut(s) 965
FokI GGATG 9 cut(s) 428, 453, 523, 650, 704, 1260, 1353, 1529, 1563
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 2 cut(s) 170, 1223
GlaI GCGC 2 cut(s) 426, 1727
GsuI CTGGAG 5 cut(s) 74, 458, 855, 875, 1320
HaeII RGCGCY 1 cut(s) 1729
HapII CCGG 5 cut(s) 351, 470, 972, 1676, 1773
HgaI GACGC 4 cut(s) 162, 266, 849, 1068
HhaI GCGC 2 cut(s) 427, 1728
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 5 cut(s) 407, 682, 731, 1051, 1494
Hin6I GCGC 2 cut(s) 425, 1726
HinP1I GCGC 2 cut(s) 425, 1726
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 9 cut(s) 314, 333, 492, 695, 818, 895, 1100, 1179, 1226
HpaII CCGG 5 cut(s) 351, 470, 972, 1676, 1773
HphI GGTGA 2 cut(s) 139, 1946
Hpy166II GTNNAC 6 cut(s) 91, 966, 1006, 1042, 1445, 1691
Hpy188I TCNGA 8 cut(s) 28, 221, 541, 760, 765, 983, 1298, 1457
Hpy8I GTNNAC 6 cut(s) 91, 966, 1006, 1042, 1445, 1691
Hpy99I CGWCG 2 cut(s) 178, 282
HpyAV CCTTC 3 cut(s) 597, 1169, 1798
HpyCH4III ACNGT 3 cut(s) 712, 1144, 1250
HpyCH4IV ACGT 5 cut(s) 107, 646, 1212, 1401, 1481
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 433, 1330, 1379, 1491, 1862, 1865
HpyF3I CTNAG 2 cut(s) 27, 827
HpySE526I ACGT 5 cut(s) 107, 646, 1212, 1401, 1481
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 5 cut(s) 407, 682, 731, 1051, 1494
HspAI GCGC 2 cut(s) 425, 1726
Kpn2I TCCGGA 1 cut(s) 469
LmnI GCTCC 9 cut(s) 34, 55, 141, 472, 791, 894, 983, 1385, 1826
Lsp1109I GCAGC 8 cut(s) 202, 280, 354, 709, 1042, 1171, 1843, 1852
LweI GCATC 4 cut(s) 138, 604, 1507, 1639
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 2 cut(s) 170, 1223
MaeII ACGT 5 cut(s) 107, 646, 1212, 1401, 1481
MaeIII GTNAC 2 cut(s) 667, 1578
MbiI CCGCTC 2 cut(s) 37, 1564
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 4 cut(s) 347, 1657, 1768, 1780
MhlI GDGCHC 2 cut(s) 60, 1487
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 8 cut(s) 249, 262, 591, 609, 739, 1291, 1390, 1816
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 2 cut(s) 501, 812
MmeI TCCRAC 4 cut(s) 768, 961, 1180, 1414
Mox20I TGGCCA 1 cut(s) 203
Mph1103I ATGCAT 1 cut(s) 1496
MroI TCCGGA 1 cut(s) 469
MscI TGGCCA 1 cut(s) 203
MseI TTAA 6 cut(s) 186, 1146, 1166, 1232, 1269, 1926
MslI CAYNNNNRTG 1 cut(s) 1698
Msp20I TGGCCA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 5 cut(s) 351, 470, 972, 1676, 1773
MspR9I CCNGG 8 cut(s) 352, 531, 837, 961, 973, 1338, 1677, 1773
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 4 cut(s) 531, 837, 961, 1338
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 7 cut(s) 37, 433, 1330, 1379, 1491, 1862, 1865
NciI CCSGG 4 cut(s) 352, 973, 1677, 1773
NlaIII CATG 5 cut(s) 407, 682, 731, 1051, 1494
NlaIV GGNNCC 7 cut(s) 57, 349, 585, 890, 937, 1018, 1659
NmeAIII GCCGAG 1 cut(s) 1737
NmuCI GTSAC 1 cut(s) 667
NsiI ATGCAT 1 cut(s) 1496
NspI RCATGY 1 cut(s) 407
PagI TCATGA 2 cut(s) 678, 727
PceI AGGCCT 2 cut(s) 805, 835
PciI ACATGT 1 cut(s) 403
PfeI GAWTC 7 cut(s) 314, 333, 695, 895, 1100, 1179, 1226
PflMI CCANNNNNTGG 2 cut(s) 506, 1343
PfoI TCCNGGA 1 cut(s) 1336
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 2 cut(s) 500, 812
PpsI GAGTC 2 cut(s) 500, 812
Ppu21I YACGTR 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 1240
PscI ACATGT 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 1240
Psp6I CCWGG 4 cut(s) 529, 835, 959, 1336
PspGI CCWGG 4 cut(s) 529, 835, 959, 1336
PspN4I GGNNCC 7 cut(s) 57, 349, 585, 890, 937, 1018, 1659
PspPI GGNCC 6 cut(s) 524, 583, 866, 1106, 1240, 1331
PspPPI RGGWCCY 1 cut(s) 1240
PsrI GAACNNNNNNTAC 2 cut(s) 495, 527
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 4 cut(s) 347, 1657, 1768, 1780
PvuI CGATCG 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 3 cut(s) 110, 378, 1116
RsaNI GTAC 3 cut(s) 109, 377, 1115
RseI CAYNNNNRTG 1 cut(s) 1698
SaqAI TTAA 6 cut(s) 186, 1146, 1166, 1232, 1269, 1926
Sau96I GGNCC 6 cut(s) 524, 583, 866, 1106, 1240, 1331
ScaI AGTACT 1 cut(s) 1116
SchI GAGTC 2 cut(s) 501, 812
ScrFI CCNGG 8 cut(s) 352, 531, 837, 961, 973, 1338, 1677, 1773
SduI GDGCHC 2 cut(s) 60, 1487
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 4 cut(s) 138, 604, 1507, 1639
SfcI CTRYAG 1 cut(s) 1764
SinI GGWCC 2 cut(s) 524, 1240
SmiMI CAYNNNNRTG 1 cut(s) 1698
SmlI CTYRAG 2 cut(s) 851, 1110
SmoI CTYRAG 2 cut(s) 851, 1110
SnaBI TACGTA 1 cut(s) 108
Sse9I AATT 8 cut(s) 249, 262, 591, 609, 739, 1291, 1390, 1816
SseBI AGGCCT 2 cut(s) 805, 835
SsiI CCGC 7 cut(s) 37, 212, 661, 996, 1218, 1534, 1564
SspMI CTAG 2 cut(s) 170, 1223
StuI AGGCCT 2 cut(s) 805, 835
StyD4I CCNGG 8 cut(s) 350, 529, 835, 959, 971, 1336, 1675, 1771
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 3 cut(s) 712, 1144, 1250
TaiI ACGT 5 cut(s) 110, 649, 1215, 1404, 1484
TaqI TCGA 5 cut(s) 159, 325, 463, 686, 1798
TaqII GACCGA 1 cut(s) 1784
TasI AATT 8 cut(s) 249, 262, 591, 609, 739, 1291, 1390, 1816
TatI WGTACW 1 cut(s) 1114
TauI GCSGC 3 cut(s) 40, 1221, 1567
TfiI GAWTC 7 cut(s) 314, 333, 695, 895, 1100, 1179, 1226
Tru1I TTAA 6 cut(s) 186, 1146, 1166, 1232, 1269, 1926
Tru9I TTAA 6 cut(s) 186, 1146, 1166, 1232, 1269, 1926
TscAI CASTG 2 cut(s) 304, 1032
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 8 cut(s) 190, 293, 367, 722, 1055, 1184, 1856, 1865
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 8 cut(s) 17, 525, 708, 891, 1061, 1862, 1866, 1899
TspGWI ACGGA 4 cut(s) 35, 172, 537, 1929
TspRI CASTG 2 cut(s) 304, 1032
Van91I CCANNNNNTGG 2 cut(s) 506, 1343
VpaK11BI GGWCC 2 cut(s) 524, 1240
XapI RAATTY 4 cut(s) 262, 739, 1291, 1816
XceI RCATGY 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 965
XspI CTAG 2 cut(s) 170, 1223
ZrmI AGTACT 1 cut(s) 1116
Zsp2I ATGCAT 1 cut(s) 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.