Rmu_co8037358.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8037358.1
OG0011107
Physical Location & Seq
Reverse (-)
137 .. 532
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8037358.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
ctgattaaggacctccgcgtcaaacgggtcttttcccaaacctacaagccgcccgagaatctaatcaacgacgccaaatccagcgccgtattctctctggctgaaccggacggtaattcaaaggaggcgaagagtgatcaggtcgagagttgtggaaatcggtttgattgctcagctccagatatggataagtccaagagtaaagaacctgaaaatttgggattagggtttctggctgaatccccaaattctgcagataagattggcggtggttccggttccgatccggaatcttctcagacctcaccacctgaggcgaaggcaaatggagttgagctcaaaatcgataacgaaaccaaaatggtattttctactcaagttattagtgttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.97

Weight (kDa)

4.79

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23740 AT4G14120
fragaria_vesca FvH4_4g12980 FvH4_4g12980 FvH4_4g12980 FvH4_4g12980
malus_domestica MD04G1019900.v1.1
prunus_persica Prupe.1G169400_v2.0.a1
pyrus_communis pycom04g01590
rosa_chinensis RchiOBHm_Chr4g0412661
rosa_laevigata RLG00000008269
rosa_multiflora Rmu_co8037358.1_g000001 Rmu_sc0001238.1_g000004
rosa_roxburghii Rroxscaffold_5G00356860
rosa_rugosa Rorug04G0115700
rosa_samantha Rh4AG174900 Rh4BG174300 Rh4CG185800 Rh4DG170800
rosa_wichuraiana Rw4G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccII CGCG 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 3 cut(s) 16, 50, 267
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 2 cut(s) 214, 247
AcyI GRCGYC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 120
AluBI AGCT 2 cut(s) 176, 337
AluI AGCT 2 cut(s) 176, 337
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 286
ApoI RAATTY 2 cut(s) 214, 247
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 1 cut(s) 10
AxyI CCTNAGG 1 cut(s) 312
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 339
BceAI ACGGC 1 cut(s) 71
BclI TGATCA 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 274, 280
BplI GAGNNNNNCTC 2 cut(s) 321, 353
BpmI CTGGAG 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 72
BsaWI WCCGGW 3 cut(s) 106, 275, 286
Bse21I CCTNAGG 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 345
BseMII CTCAG 3 cut(s) 186, 303, 311
Bsh1236I CGCG 1 cut(s) 18
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 3 cut(s) 107, 276, 287
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 339
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 2 cut(s) 136, 283
Bsp1720I GCTNAGC 1 cut(s) 172
BspACI CCGC 3 cut(s) 16, 50, 267
BspCNI CTCAG 3 cut(s) 185, 304, 310
BspDI ATCGAT 1 cut(s) 345
BspEI TCCGGA 1 cut(s) 286
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 274, 280
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 278
BssMI GATC 2 cut(s) 136, 283
BssNI GRCGYC 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 72
BstDEI CTNAG 3 cut(s) 172, 297, 312
BstFNI CGCG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 2 cut(s) 139, 286
BstMBI GATC 2 cut(s) 136, 283
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 345
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 2 cut(s) 7, 80
CviJI RGCY 5 cut(s) 49, 101, 176, 236, 337
CviKI_1 RGCY 5 cut(s) 49, 101, 176, 236, 337
DdeI CTNAG 3 cut(s) 172, 297, 312
DpnI GATC 2 cut(s) 138, 285
DpnII GATC 2 cut(s) 136, 283
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 337
Eco81I CCTNAGG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 339
FaiI YATR 1 cut(s) 185
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 50
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 87
HapII CCGG 3 cut(s) 107, 276, 287
HgaI GACGC 2 cut(s) 7, 80
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 72
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 3 cut(s) 58, 239, 290
HpaII CCGG 3 cut(s) 107, 276, 287
HphI GGTGA 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 283, 300
Hpy188III TCNNGA 3 cut(s) 145, 179, 287
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 172, 297, 312
Hsp92I GRCGYC 1 cut(s) 72
HspAI GCGC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 136, 283
LmnI GCTCC 1 cut(s) 181
MalI GATC 2 cut(s) 138, 285
MboI GATC 2 cut(s) 136, 283
MboII GAAGA 2 cut(s) 142, 285
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 3 cut(s) 115, 214, 247
MnlI CCTC 4 cut(s) 23, 118, 307, 313
MroI TCCGGA 1 cut(s) 286
MseI TTAA 2 cut(s) 6, 394
MspI CCGG 3 cut(s) 107, 276, 287
MvnI CGCG 1 cut(s) 18
NdeII GATC 2 cut(s) 136, 283
NlaIV GGNNCC 2 cut(s) 274, 280
PfeI GAWTC 3 cut(s) 58, 239, 290
PkrI GCNGC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 10
Psp124BI GAGCTC 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 274, 280
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
PstI CTGCAG 1 cut(s) 256
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 6, 394
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 136, 283
Sau96I GGNCC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 339
SetI ASST 8 cut(s) 15, 44, 144, 178, 211, 305, 313, 339
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
Sse9I AATT 3 cut(s) 115, 214, 247
SsiI CCGC 3 cut(s) 16, 50, 267
SstI GAGCTC 1 cut(s) 339
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 144, 345
TasI AATT 3 cut(s) 115, 214, 247
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 3 cut(s) 58, 239, 290
Tru1I TTAA 2 cut(s) 6, 394
Tru9I TTAA 2 cut(s) 6, 394
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 2 cut(s) 214, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.