AT4G14120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011107
Physical Location & Seq
Forward (+)
8135124 .. 8137401
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14120.1

Sequence Viewer

Length: 1107 bp
ATGGCCGAATCAGATCCTATATTGAGGAAGAAGATGCGATTTTCGTCTTCTTCAGTTCGTTATACTACCTCTCAGAACCTTATGGCAAGCAAATTACGAACTCAGAGCAATCGTTCCTCCGTTCGATTTGCATCCCCATTGTCTCACATTGTCACGGATCTTCGTCACCATCATGCGTCACCGATCAAAGGGAAAATTGTTACTCAAATGCCCCGAACTTGTTCTCGTGTCACCGTGAAGAATCTGTGTCTCAGACGCGTATTCTCTCCTAGTTCCATCTCTAGTGATTGGGACTTTCATGTGAAAGGGGGAAATCTAACCAAGGAGCTAAATGTGGAATCTCCTTGCGATACTCCGAATTCTAATGTTATGAGAGAAGGAAGCAAATATCTTGTTGATGGATTAGTGGCTACTGGAGGTGATTTAGAAGTAGTGGAATGCTCACAAACGACGCCACCGGATTTAGGAATGTTCACCGGTGAGCTTTCTTTGGTGAAAAATGAAGCAGGTTCTATCAATCAAGAGATCAGTGAGGTCTCTGGGAAGAAAGTTGGTACCAATCTCGGCAGCAAAGTGATTCGTCATCCGGAAAAGATTTTCAAGAACCCTGGCTCTGTGAGCTATAGAAGAATGCTTCCTTACTTGATGGAAGCTGCAGATGTTACCCGAGATGGTGATGCAAAAGATCCTAAGGATGAAAGAGGTGAATTGATGGCAGCAAATTACCGACTTCCTGAAACCGTATCTGCCAATAGCTTTGTTAAAGCTCATGGAAACAATAGCCCTTTCAAGAAGATGACTTCATCCAGTGGCAACAAAATTTCTCTGTGCTGCCGGCGCAAGCTATTTAAAGTGCCAGGTTCTGTAAATTACAGAAGAATGCTTTCATATCTCAAAGAGAACTCAGAGGATAATCATGGAACTCCTGAAACCACGCATACAGATCCTCAGAAGAATATAGAGGAGAATGCTTCAGCTATTGAGGCTAAAGGGGCATCAAATGAAGTTACAGATTTAGATACATGCTCTAACAACGTTGAGACGCCACTAGCTGATCCAAAGAATGAGCAAGAAACTCAACTTTTGTTAGCTGAGTTTAGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

40.59

Weight (kDa)

8.66

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23740 AT4G14120
fragaria_vesca FvH4_4g12980 FvH4_4g12980 FvH4_4g12980 FvH4_4g12980
malus_domestica MD04G1019900.v1.1
prunus_persica Prupe.1G169400_v2.0.a1
pyrus_communis pycom04g01590
rosa_chinensis RchiOBHm_Chr4g0412661
rosa_laevigata RLG00000008269
rosa_multiflora Rmu_co8037358.1_g000001 Rmu_sc0001238.1_g000004
rosa_roxburghii Rroxscaffold_5G00356860
rosa_rugosa Rorug04G0115700
rosa_samantha Rh4AG174900 Rh4BG174300 Rh4CG185800 Rh4DG170800
rosa_wichuraiana Rw4G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 497
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 586
AclI AACGTT 1 cut(s) 1035
AclWI GGATC 5 cut(s) 8, 165, 680, 938, 1049
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 358, 819
AcuI CTGAAG 2 cut(s) 36, 957
AcyI GRCGYC 2 cut(s) 452, 1043
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 2 cut(s) 188, 464
AflIII ACRYGT 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 2 cut(s) 601, 790
AjnI CCWGG 2 cut(s) 607, 856
Alw26I GTCTC 4 cut(s) 147, 254, 541, 1034
AlwI GGATC 5 cut(s) 8, 165, 680, 938, 1049
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 666
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 567, 653, 716, 831
ApoI RAATTY 2 cut(s) 358, 819
AsiGI ACCGGT 1 cut(s) 476
Asp700I GAANNNNTTC 2 cut(s) 220, 883
Asp718I GGTACC 1 cut(s) 554
AspLEI GCGC 1 cut(s) 840
AsuHPI GGTGA 9 cut(s) 158, 171, 223, 431, 466, 491, 505, 686, 716
AvaI CYCGRG 1 cut(s) 666
AxyI CCTNAGG 1 cut(s) 690
BanI GGYRCC 1 cut(s) 554
BauI CACGAG 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 579, 640, 728, 818
BccI CCATC 6 cut(s) 177, 284, 392, 640, 665, 706
BciT130I CCWGG 2 cut(s) 609, 858
BcoDI GTCTC 4 cut(s) 147, 254, 541, 1034
BfaI CTAG 3 cut(s) 270, 282, 1049
BfmI CTRYAG 2 cut(s) 622, 654
BfuAI ACCTGC 1 cut(s) 497
BisI GCNGC 4 cut(s) 568, 654, 717, 832
BlsI GCNGC 4 cut(s) 569, 655, 718, 833
Bme1390I CCNGG 2 cut(s) 609, 858
BmeT110I CYCGRG 1 cut(s) 666
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 2 cut(s) 609, 858
BmsI GCATC 4 cut(s) 24, 140, 667, 1004
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 130
BsaHI GRCGYC 2 cut(s) 452, 1043
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 321, 607
BsaWI WCCGGW 3 cut(s) 457, 476, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 464
Bse118I RCCGGY 2 cut(s) 476, 834
Bse1I ACTGG 2 cut(s) 418, 807
Bse21I CCTNAGG 1 cut(s) 690
Bse8I GATNNNNATC 1 cut(s) 130
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 2 cut(s) 609, 858
BseDI CCNNGG 2 cut(s) 321, 607
BseGI GGATG 4 cut(s) 131, 583, 700, 803
BseJI GATNNNNATC 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 188, 464
BseMII CTCAG 6 cut(s) 86, 116, 265, 918, 962, 1083
BseNI ACTGG 2 cut(s) 418, 807
BseRI GAGGAG 1 cut(s) 977
BseXI GCAGC 4 cut(s) 579, 640, 728, 818
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 554
BshTI ACCGGT 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 4 cut(s) 458, 477, 587, 835
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 188, 464
BsmAI GTCTC 4 cut(s) 147, 254, 541, 1034
BsmBI CGTCTC 1 cut(s) 1034
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 4 cut(s) 443, 636, 885, 973
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 666
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 6 cut(s) 85, 115, 264, 917, 961, 1084
BspEI TCCGGA 1 cut(s) 586
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 556
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 5 cut(s) 8, 165, 680, 938, 1049
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 541
BsrFI RCCGGY 2 cut(s) 476, 834
BsrI ACTGG 2 cut(s) 418, 807
BssAI RCCGGY 2 cut(s) 476, 834
BssECI CCNNGG 2 cut(s) 321, 607
BssMI GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
BssNI GRCGYC 2 cut(s) 452, 1043
BssSI CACGAG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 609, 858
Bst4CI ACNGT 2 cut(s) 235, 742
BstACI GRCGYC 2 cut(s) 452, 1043
BstC8I GCNNGC 3 cut(s) 88, 836, 842
BstDEI CTNAG 7 cut(s) 72, 102, 251, 690, 904, 948, 1092
BstF5I GGATG 4 cut(s) 131, 583, 700, 803
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 840
BstKTI GATC 7 cut(s) 16, 160, 186, 528, 688, 946, 1057
BstMAI GTCTC 4 cut(s) 147, 254, 541, 1034
BstMBI GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 618, 837, 983, 992
BstNI CCWGG 2 cut(s) 609, 858
BstNSI RCATGY 1 cut(s) 1026
BstSCI CCNGG 2 cut(s) 607, 856
BstSFI CTRYAG 2 cut(s) 622, 654
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 579, 640, 728, 818
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 4 cut(s) 13, 157, 685, 943
BstYI RGATCY 4 cut(s) 13, 157, 685, 943
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 131, 583, 700, 803
BtsIMutI CAGTG 2 cut(s) 535, 814
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 3 cut(s) 88, 836, 842
CaiI CAGNNNCTG 1 cut(s) 863
CfoI GCGC 1 cut(s) 840
Cfr10I RCCGGY 2 cut(s) 476, 834
CseI GACGC 4 cut(s) 165, 264, 460, 1051
Csp6I GTAC 1 cut(s) 555
CspAI ACCGGT 1 cut(s) 476
CviAII CATG 5 cut(s) 173, 299, 770, 917, 1023
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 7 cut(s) 72, 102, 251, 690, 904, 948, 1092
DpnI GATC 7 cut(s) 15, 159, 185, 527, 687, 945, 1056
DpnII GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
DraI TTTAAA 1 cut(s) 850
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 36, 957
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 666
EcoRI GAATTC 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 607, 856
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 1034
FaeI CATG 5 cut(s) 176, 302, 773, 920, 1026
FaqI GGGAC 1 cut(s) 305
FatI CATG 5 cut(s) 172, 298, 769, 916, 1022
Fnu4HI GCNGC 4 cut(s) 568, 654, 717, 832
FokI GGATG 4 cut(s) 118, 570, 707, 790
Fsp4HI GCNGC 4 cut(s) 568, 654, 717, 832
FspBI CTAG 3 cut(s) 270, 282, 1049
GlaI GCGC 1 cut(s) 839
GluI GCNGC 4 cut(s) 568, 654, 717, 832
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 458, 477, 587, 835
HgaI GACGC 4 cut(s) 165, 264, 460, 1051
HhaI GCGC 1 cut(s) 840
Hin1I GRCGYC 2 cut(s) 452, 1043
Hin1II CATG 5 cut(s) 176, 302, 773, 920, 1026
Hin6I GCGC 1 cut(s) 838
HinP1I GCGC 1 cut(s) 838
HinfI GANTC 4 cut(s) 8, 241, 338, 577
HpaII CCGG 4 cut(s) 458, 477, 587, 835
HphI GGTGA 9 cut(s) 158, 171, 223, 431, 466, 491, 505, 686, 716
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 7 cut(s) 13, 75, 105, 254, 357, 907, 951
Hpy188III TCNNGA 6 cut(s) 521, 587, 601, 734, 790, 926
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 235, 742
HpyCH4IV ACGT 1 cut(s) 1035
HpyCH4V TGCA 3 cut(s) 131, 656, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 618, 837, 983, 992
HpyF3I CTNAG 7 cut(s) 72, 102, 251, 690, 904, 948, 1092
HpySE526I ACGT 1 cut(s) 1035
Hsp92I GRCGYC 2 cut(s) 452, 1043
Hsp92II CATG 5 cut(s) 176, 302, 773, 920, 1026
HspAI GCGC 1 cut(s) 838
Kpn2I TCCGGA 1 cut(s) 586
KpnI GGTACC 1 cut(s) 558
KroI GCCGGC 1 cut(s) 834
KroNI GCCGGC 1 cut(s) 836
Kzo9I GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 4 cut(s) 579, 640, 728, 818
LweI GCATC 4 cut(s) 24, 140, 667, 1004
MaeI CTAG 3 cut(s) 270, 282, 1049
MaeII ACGT 1 cut(s) 1035
MaeIII GTNAC 7 cut(s) 151, 164, 177, 199, 229, 661, 1006
MalI GATC 7 cut(s) 15, 159, 185, 527, 687, 945, 1056
MboI GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
MflI RGATCY 4 cut(s) 13, 157, 685, 943
MluCI AATT 7 cut(s) 92, 195, 358, 707, 721, 819, 868
MluI ACGCGT 1 cut(s) 256
MroI TCCGGA 1 cut(s) 586
MroNI GCCGGC 1 cut(s) 834
MroXI GAANNNNTTC 2 cut(s) 220, 883
MseI TTAA 2 cut(s) 762, 849
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 4 cut(s) 458, 477, 587, 835
MspR9I CCNGG 2 cut(s) 609, 858
Mva1269I GAATGC 4 cut(s) 443, 636, 885, 973
MvaI CCWGG 2 cut(s) 609, 858
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 618, 837, 983, 992
NaeI GCCGGC 1 cut(s) 836
NdeII GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
NgoMIV GCCGGC 1 cut(s) 834
NlaIII CATG 5 cut(s) 176, 302, 773, 920, 1026
NlaIV GGNNCC 1 cut(s) 556
NmeAIII GCCGAG 1 cut(s) 543
NmuCI GTSAC 4 cut(s) 151, 164, 177, 229
NspI RCATGY 1 cut(s) 1026
PctI GAATGC 4 cut(s) 443, 636, 885, 973
PdiI GCCGGC 1 cut(s) 836
PdmI GAANNNNTTC 2 cut(s) 220, 883
PfeI GAWTC 4 cut(s) 8, 241, 338, 577
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 4 cut(s) 569, 655, 718, 833
Psp1406I AACGTT 1 cut(s) 1035
Psp6I CCWGG 2 cut(s) 607, 856
PspGI CCWGG 2 cut(s) 607, 856
PspN4I GGNNCC 1 cut(s) 556
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 4 cut(s) 13, 157, 685, 943
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 2 cut(s) 762, 849
SatI GCNGC 4 cut(s) 568, 654, 717, 832
Sau3AI GATC 7 cut(s) 13, 157, 183, 525, 685, 943, 1054
ScrFI CCNGG 2 cut(s) 609, 858
SfaNI GCATC 4 cut(s) 24, 140, 667, 1004
SfcI CTRYAG 2 cut(s) 622, 654
SgrAI CRCCGGYG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 7 cut(s) 92, 195, 358, 707, 721, 819, 868
SspMI CTAG 3 cut(s) 270, 282, 1049
StyD4I CCNGG 2 cut(s) 607, 856
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 235, 742
TaiI ACGT 1 cut(s) 1038
TaqI TCGA 1 cut(s) 124
TasI AATT 7 cut(s) 92, 195, 358, 707, 721, 819, 868
TfiI GAWTC 4 cut(s) 8, 241, 338, 577
Tru1I TTAA 2 cut(s) 762, 849
Tru9I TTAA 2 cut(s) 762, 849
TscAI CASTG 2 cut(s) 535, 814
TseFI GTSAC 4 cut(s) 151, 164, 177, 229
TseI GCWGC 4 cut(s) 567, 653, 716, 831
Tsp45I GTSAC 4 cut(s) 151, 164, 177, 229
TspDTI ATGAA 6 cut(s) 287, 516, 711, 792, 876, 1017
TspGWI ACGGA 2 cut(s) 109, 170
TspRI CASTG 2 cut(s) 535, 814
XapI RAATTY 2 cut(s) 358, 819
XceI RCATGY 1 cut(s) 1026
XmnI GAANNNNTTC 2 cut(s) 220, 883
XspI CTAG 3 cut(s) 270, 282, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.