Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014377

Physical Location & Seq

Genomic Coordinates Forward (+)

8685739 .. 8687726

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCTCTGTACCGGAAGAGGAAGAAGACGACGACGAACATACGCAACCACCGAGGAATATTACTCGCCGGAAAACTGGATTACGGCCAACAGACTCCTTCGGTCTCTTTAATACCGACGACCTTGGAGTGGTTGAAGAAGAGGATTTGGAATGGATTTCAAACAAAAATGCTTTTCCGGTGATTGAAACATTCGTCGGTGTATTACCGTCGGAGCATTTTCCTATAACGTCTCTTCTGGAAAGAGAAGCGACTGAGGTAAAACAGCTGAGTCCGGTTTCAGTACTTGAGACGAGTAGCCATAGCTCCACAACGACTACCTCAAACAGTAGCGGCGGAAGTAACGGAAGCACGGCCGTGGCTACGACCACCACCACTCCAACAATAATGAGCTGTTGCGTTGGTTTTAAAGCGCCGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTACGAGTTTTGTGGACAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGATGACTGTGGCGGCGGCTGCGTTGATTATGGGAAGGAAGTGTCAACACTGTGGAGCGGAGAAGACTCCGCAATGGAGGGCAGGACCAGCGGGGCCTAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCCGGGAGGCTAGTTCCGGAGTATCGTCCAGCGAACAGTCCAACTTTCACGGCGGAGTTACATTCGAATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATCAGTCCGGTGACGGTGACGGTGATCGGAAAGATTGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

274

Amino Acids

30.11

Weight (kDa)

7.01

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	196 - 230	1.9e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24050
fragaria_vesca	FvH4_4g05560
malus_domestica	MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis	pycom16g19570
rosa_chinensis	RchiOBHm_Chr4g0396671
rosa_laevigata	RLG00000009510
rosa_multiflora	Rmu_sc0006586.1_g000011
rosa_roxburghii	Rroxscaffold_5G00341530
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana	Rw4G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	602
AccIII	TCCGGA	1 cut(s)	694
AciI	CCGC	8 cut(s)	366, 369, 557, 560, 602, 614, 635, 731
AcoI	YGGCCR	2 cut(s)	119, 387
AcsI	RAATTY	1 cut(s)	745
AcyI	GRCGYC	1 cut(s)	484
AfaI	GTAC	3 cut(s)	45, 318, 478
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	34, 170, 195, 221
AleI	CACNNNNGTG	1 cut(s)	389
AluBI	AGCT	3 cut(s)	301, 339, 426
AluI	AGCT	3 cut(s)	301, 339, 426
Alw26I	GTCTC	3 cut(s)	143, 270, 317
Aor13HI	TCCGGA	1 cut(s)	694
AoxI	GGCC	3 cut(s)	119, 387, 638
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	629, 638
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	5 cut(s)	226, 743, 803, 809, 815
AsuII	TTCGAA	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	629
BbsI	GAAGAC	3 cut(s)	66, 548, 614
BbvI	GCAGC	1 cut(s)	550
BceAI	ACGGC	5 cut(s)	134, 374, 402, 471, 744
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	3 cut(s)	143, 270, 317
BfaI	CTAG	1 cut(s)	689
BfoI	RGCGCY	1 cut(s)	449
BisI	GCNGC	4 cut(s)	367, 558, 561, 564
BlsI	GCNGC	4 cut(s)	368, 559, 562, 565
BmcAI	AGTACT	1 cut(s)	318
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	629, 638
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	1 cut(s)	682
BpiI	GAAGAC	3 cut(s)	66, 548, 614
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	682
BsaHI	GRCGYC	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	86, 157, 390
BsaWI	WCCGGW	6 cut(s)	46, 211, 307, 694, 753, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	623
BseAI	TCCGGA	1 cut(s)	694
BseDI	CCNNGG	3 cut(s)	86, 157, 390
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	279, 293
BseNI	ACTGG	1 cut(s)	115
BseX3I	CGGCCG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	550
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	3 cut(s)	121, 389, 640
BsiEI	CGRYCG	1 cut(s)	390
BsiSI	CCGG	9 cut(s)	47, 103, 212, 308, 449, 681, 695, 754, 789
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	3 cut(s)	143, 270, 317
BsmBI	CGTCTC	2 cut(s)	270, 317
BsnI	GGCC	3 cut(s)	121, 389, 640
Bso31I	GGTCTC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	743
Bsp13I	TCCGGA	1 cut(s)	694
Bsp143I	GATC	1 cut(s)	805
BspACI	CCGC	8 cut(s)	366, 369, 557, 560, 602, 614, 635, 731
BspANI	GGCC	3 cut(s)	121, 389, 640
BspCNI	CTCAG	2 cut(s)	280, 294
BspEI	TCCGGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	3 cut(s)	86, 157, 390
BssMI	GATC	1 cut(s)	805
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	7 cut(s)	243, 362, 553, 596, 716, 797, 803
Bst6I	CTCTTC	3 cut(s)	45, 168, 273
BstACI	GRCGYC	1 cut(s)	484
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	450, 467
BstDEI	CTNAG	3 cut(s)	288, 302, 642
BstDSI	CCRYGG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	808
BstMAI	GTCTC	3 cut(s)	143, 270, 317
BstMBI	GATC	1 cut(s)	805
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 632
BstSCI	CCNGG	1 cut(s)	680
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	3 cut(s)	66, 548, 614
BstZI	CGGCCG	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	121, 389, 640
BtgI	CCRYGG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	450, 467
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	629, 638
CseI	GACGC	2 cut(s)	458, 492
Csp6I	GTAC	3 cut(s)	44, 317, 477
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	3 cut(s)	44, 317, 477
DdeI	CTNAG	3 cut(s)	288, 302, 642
DpnI	GATC	1 cut(s)	807
DpnII	GATC	1 cut(s)	805
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	119, 387
EagI	CGGCCG	1 cut(s)	387
Eam1104I	CTCTTC	3 cut(s)	45, 168, 273
EarI	CTCTTC	3 cut(s)	45, 168, 273
EciI	GGCGGA	2 cut(s)	384, 746
EclXI	CGGCCG	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	629
Eco52I	CGGCCG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	2 cut(s)	270, 317
FaeI	CATG	1 cut(s)	22
FaiI	YATR	6 cut(s)	20, 75, 260, 336, 575, 675
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	628
Fnu4HI	GCNGC	4 cut(s)	367, 558, 561, 564
Fsp4HI	GCNGC	4 cut(s)	367, 558, 561, 564
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	4 cut(s)	367, 558, 561, 564
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	121, 389, 640
HapII	CCGG	9 cut(s)	47, 103, 212, 308, 449, 681, 695, 754, 789
HgaI	GACGC	2 cut(s)	458, 492
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HinfI	GANTC	5 cut(s)	11, 128, 304, 610, 646
HpaII	CCGG	9 cut(s)	47, 103, 212, 308, 449, 681, 695, 754, 789
HphI	GGTGA	5 cut(s)	226, 743, 803, 809, 815
Hpy166II	GTNNAC	2 cut(s)	507, 590
Hpy188I	TCNGA	2 cut(s)	247, 810
Hpy188III	TCNNGA	2 cut(s)	272, 695
Hpy8I	GTNNAC	2 cut(s)	507, 590
Hpy99I	CGWCG	7 cut(s)	68, 71, 155, 233, 247, 474, 477
HpyAV	CCTTC	2 cut(s)	142, 573
HpyCH4III	ACNGT	7 cut(s)	243, 362, 553, 596, 716, 797, 803
HpyCH4IV	ACGT	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 632
HpyF3I	CTNAG	3 cut(s)	288, 302, 642
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	446
Kpn2I	TCCGGA	1 cut(s)	694
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Kzo9I	GATC	1 cut(s)	805
LmnI	GCTCC	3 cut(s)	247, 344, 599
Lsp1109I	GCAGC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	5 cut(s)	374, 653, 735, 791, 797
MalI	GATC	1 cut(s)	807
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	1 cut(s)	805
MluCI	AATT	1 cut(s)	745
MlyI	GAGTC	4 cut(s)	122, 313, 604, 640
MmeI	TCCRAC	3 cut(s)	225, 437, 743
MroI	TCCGGA	1 cut(s)	694
MroNI	GCCGGC	1 cut(s)	448
MseI	TTAA	2 cut(s)	144, 441
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	2 cut(s)	301, 635
MspI	CCGG	9 cut(s)	47, 103, 212, 308, 449, 681, 695, 754, 789
MspR9I	CCNGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	2 cut(s)	563, 632
NaeI	GCCGGC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	682
NdeII	GATC	1 cut(s)	805
NgoMIV	GCCGGC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	2 cut(s)	791, 797
NspV	TTCGAA	1 cut(s)	743
OliI	CACNNNNGTG	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 663
PdiI	GCCGGC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	680
PkrI	GCNGC	4 cut(s)	368, 559, 562, 565
PleI	GAGTC	4 cut(s)	122, 312, 604, 640
PpsI	GAGTC	4 cut(s)	122, 312, 604, 640
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	2 cut(s)	629, 638
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	3 cut(s)	45, 318, 478
RsaNI	GTAC	3 cut(s)	44, 317, 477
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	144, 441
SatI	GCNGC	4 cut(s)	367, 558, 561, 564
Sau3AI	GATC	1 cut(s)	805
Sau96I	GGNCC	2 cut(s)	629, 638
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	4 cut(s)	122, 313, 604, 640
ScrFI	CCNGG	1 cut(s)	682
SetI	ASST	9 cut(s)	30, 159, 266, 294, 303, 341, 356, 428, 674
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	745
SsiI	CCGC	8 cut(s)	366, 369, 557, 560, 602, 614, 635, 731
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	689
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	7 cut(s)	243, 362, 553, 596, 716, 797, 803
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	743
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	745
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	3 cut(s)	369, 560, 563
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	144, 441
Tru9I	TTAA	2 cut(s)	144, 441
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	2 cut(s)	791, 797
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	2 cut(s)	791, 797
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	745
XspI	CTAG	1 cut(s)	689
ZrmI	AGTACT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.