RLG00000009510

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014377
Physical Location & Seq
Reverse (-)
53789138 .. 53790441
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009510

Sequence Viewer

Length: 681 bp
ATGGTGCCACTTGACCCAGCGGCCTGTCTCGTCGACGACCTCCGTAACTTCTTGTCCGACGTCGGCGACCACGACGGCCGGCCCGATGATCCTAGCCGTCCGTTAATCGCAACTGAGGAAGCAGAAGAAGAGCTGGAATGGATATCGAACAAGGACGCGTTCCCGGCGGTGGAAACGTTCATTCTCTCGGAGCAGGTGGGCGGCATTGCGATTGCCAAGCACCAGAGCCCTGTCTCGGTGCTGGAGAACAGCGCAAACAGCAGCAGCGCCTCCCTCATGAGCTCGTGTGGGGGGCTAAAGCCGCCCCACCGAGCGCGGACCAAAGGCCGCCGCAGGCGGAGTGAAATTCCTGCGCAGCAGCTATTTTGGAACCAACCGATTGAGAGCAAACCCAGCAGGAGTGCCAGTGCCAGTGCCAGCAAGCTGGATATTGGGAGAAAGTGCCTGCATTGCGGGACTGATCAGACACCGCAATGGCGGGCGGGTCCCCGTGGACCCAAAACCTTGTGTAATGCCTGTGGGGTGAGGTACAAGTCAGGGCGGCTTTGCCCCGAGTACCGCCCTGCGAGTAGCCCGACGTTCTCGAGCGAGATGCATTCGAACTCCCACAGGAAGGTATTGGAGATGAGGAAGCAAAAGTATGGAATGGGGATGGTTGTGAAGCCTGAGGTTAAAGGTTAG

Protein Analysis

227

Amino Acids

24.77

Weight (kDa)

8.99

Isoelectric Point (pI)

69.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 148 - 182 2.2e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24050
fragaria_vesca FvH4_4g05560
malus_domestica MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis pycom16g19570
rosa_chinensis RchiOBHm_Chr4g0396671
rosa_laevigata RLG00000009510
rosa_multiflora Rmu_sc0006586.1_g000011
rosa_roxburghii Rroxscaffold_5G00341530
rosa_rugosa Rorug03G0348200
rosa_samantha Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana Rw4G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
AatII GACGTC 1 cut(s) 63
Acc16I TGCGCA 1 cut(s) 354
Acc36I ACCTGC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 33
AccII CGCG 2 cut(s) 158, 316
AclI AACGTT 1 cut(s) 176
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 2 cut(s) 530, 557
AfiI CCNNNNNNNGG 3 cut(s) 169, 235, 613
AflIII ACRYGT 1 cut(s) 156
AluBI AGCT 4 cut(s) 133, 282, 361, 424
AluI AGCT 4 cut(s) 133, 282, 361, 424
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 32, 238
AlwI GGATC 1 cut(s) 83
Ama87I CYCGRG 2 cut(s) 551, 583
AoxI GGCC 4 cut(s) 21, 76, 80, 325
ApeKI GCWGC 4 cut(s) 261, 264, 355, 358
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 4 cut(s) 254, 269, 316, 355
AspS9I GGNCC 4 cut(s) 81, 318, 485, 494
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 535
AsuII TTCGAA 1 cut(s) 599
AvaI CYCGRG 2 cut(s) 551, 583
AvaII GGWCC 3 cut(s) 318, 485, 494
AxyI CCTNAGG 1 cut(s) 666
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 230, 284
BauI CACGAG 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 4 cut(s) 273, 276, 367, 370
BccI CCATC 1 cut(s) 646
BceAI ACGGC 2 cut(s) 81, 91
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 32, 238
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 3 cut(s) 318, 485, 494
BmeT110I CYCGRG 2 cut(s) 551, 583
BmgT120I GGNCC 4 cut(s) 81, 318, 485, 494
BmiI GGNNCC 5 cut(s) 6, 371, 486, 487, 496
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 490
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 235, 613
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 405, 411
Bse21I CCTNAGG 1 cut(s) 666
Bse3DI GCAATG 3 cut(s) 204, 448, 479
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 3 cut(s) 169, 235, 613
BseMI GCAATG 3 cut(s) 204, 448, 479
BseMII CTCAG 2 cut(s) 105, 657
BseNI ACTGG 2 cut(s) 405, 411
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 4 cut(s) 273, 276, 367, 370
BseYI CCCAGC 2 cut(s) 16, 392
Bsh1236I CGCG 2 cut(s) 158, 316
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 4 cut(s) 23, 78, 82, 327
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 2 cut(s) 551, 583
BsiSI CCGG 2 cut(s) 79, 164
BslFI GGGAC 2 cut(s) 469, 471
BslI CCNNNNNNNGG 3 cut(s) 169, 235, 613
BsmAI GTCTC 2 cut(s) 32, 238
BsmFI GGGAC 2 cut(s) 469, 471
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 4 cut(s) 23, 78, 82, 327
BsoBI CYCGRG 2 cut(s) 551, 583
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 230, 284
Bsp143I GATC 2 cut(s) 88, 460
BspANI GGCC 4 cut(s) 23, 78, 82, 327
BspCNI CTCAG 2 cut(s) 106, 658
BspFNI CGCG 2 cut(s) 158, 316
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 5 cut(s) 6, 371, 486, 487, 496
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 3 cut(s) 204, 448, 479
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 2 cut(s) 405, 411
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 2 cut(s) 88, 460
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 6 cut(s) 80, 335, 418, 422, 446, 480
BstDEI CTNAG 2 cut(s) 114, 666
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 1 cut(s) 657
BstFNI CGCG 2 cut(s) 158, 316
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 4 cut(s) 254, 269, 316, 355
BstKTI GATC 2 cut(s) 91, 463
BstMAI GTCTC 2 cut(s) 32, 238
BstMBI GATC 2 cut(s) 88, 460
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 5 cut(s) 164, 258, 301, 393, 450
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 2 cut(s) 158, 316
BstV1I GCAGC 4 cut(s) 273, 276, 367, 370
BstXI CCANNNNNNTGG 1 cut(s) 424
BstZI CGGCCG 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 4 cut(s) 23, 78, 82, 327
BtgI CCRYGG 1 cut(s) 490
BtsCI GGATG 1 cut(s) 657
BtsIMutI CAGTG 2 cut(s) 412, 418
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 6 cut(s) 80, 335, 418, 422, 446, 480
CciI TCATGA 1 cut(s) 276
CfoI GCGC 4 cut(s) 254, 269, 316, 355
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 4 cut(s) 81, 318, 485, 494
CseI GACGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 529, 556
CviAII CATG 1 cut(s) 277
CviQI GTAC 2 cut(s) 529, 556
DdeI CTNAG 2 cut(s) 114, 666
DpnI GATC 2 cut(s) 90, 462
DpnII GATC 2 cut(s) 88, 460
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 282
EclXI CGGCCG 1 cut(s) 76
Eco24I GRGCYC 2 cut(s) 230, 284
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 3 cut(s) 318, 485, 494
Eco52I CGGCCG 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 282
Eco81I CCTNAGG 1 cut(s) 666
Eco88I CYCGRG 2 cut(s) 551, 583
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 485
EcoRV GATATC 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 597
EcoT38I GRGCYC 2 cut(s) 230, 284
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 278, 642
FaqI GGGAC 2 cut(s) 469, 471
FatI CATG 1 cut(s) 276
FauI CCCGC 3 cut(s) 446, 471, 475
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 33
FokI GGATG 1 cut(s) 664
FriOI GRGCYC 2 cut(s) 230, 284
FseI GGCCGGCC 1 cut(s) 82
FspBI CTAG 1 cut(s) 93
FspI TGCGCA 1 cut(s) 354
GlaI GCGC 4 cut(s) 253, 268, 315, 354
GsaI CCCAGC 2 cut(s) 20, 396
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 4 cut(s) 23, 78, 82, 327
HapII CCGG 2 cut(s) 79, 164
HgaI GACGC 1 cut(s) 164
HhaI GCGC 4 cut(s) 254, 269, 316, 355
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 4 cut(s) 252, 267, 314, 353
HinP1I GCGC 4 cut(s) 252, 267, 314, 353
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HpaII CCGG 2 cut(s) 79, 164
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 2 cut(s) 34, 494
Hpy188I TCNGA 3 cut(s) 58, 190, 465
Hpy188III TCNNGA 2 cut(s) 277, 583
Hpy8I GTNNAC 2 cut(s) 34, 494
Hpy99I CGWCG 6 cut(s) 35, 38, 62, 65, 77, 580
HpyAV CCTTC 1 cut(s) 607
HpyCH4IV ACGT 3 cut(s) 60, 176, 578
HpyCH4V TGCA 2 cut(s) 448, 595
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 258, 301, 393, 450
HpyF3I CTNAG 2 cut(s) 114, 666
HpySE526I ACGT 3 cut(s) 60, 176, 578
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 4 cut(s) 252, 267, 314, 353
KflI GGGWCCC 1 cut(s) 485
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 2 cut(s) 88, 460
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 4 cut(s) 273, 276, 367, 370
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 93
MaeII ACGT 3 cut(s) 60, 176, 578
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 90, 462
MboI GATC 2 cut(s) 88, 460
MboII GAAGA 2 cut(s) 137, 140
MhlI GDGCHC 2 cut(s) 230, 284
MluCI AATT 1 cut(s) 345
MluI ACGCGT 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 7 cut(s) 50, 109, 280, 284, 519, 621, 661
Mph1103I ATGCAT 1 cut(s) 597
MroNI GCCGGC 1 cut(s) 78
MseI TTAA 2 cut(s) 104, 672
MslI CAYNNNNRTG 1 cut(s) 472
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 79, 164
MspR9I CCNGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 2 cut(s) 158, 316
MwoI GCNNNNNNNGC 5 cut(s) 164, 258, 301, 393, 450
NaeI GCCGGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 164
NdeII GATC 2 cut(s) 88, 460
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 5 cut(s) 6, 371, 486, 487, 496
NsbI TGCGCA 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 597
NspV TTCGAA 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 583
PagI TCATGA 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 81
PctI GAATGC 1 cut(s) 595
PdiI GCCGGC 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 284
Psp1406I AACGTT 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 485
PspFI CCCAGC 2 cut(s) 16, 392
PspN4I GGNNCC 5 cut(s) 6, 371, 486, 487, 496
PspPI GGNCC 4 cut(s) 81, 318, 485, 494
PspPPI RGGWCCY 1 cut(s) 485
RigI GGCCGGCC 1 cut(s) 82
RsaI GTAC 2 cut(s) 530, 557
RsaNI GTAC 2 cut(s) 529, 556
RseI CAYNNNNRTG 1 cut(s) 472
SacI GAGCTC 1 cut(s) 284
SalI GTCGAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 104, 672
Sau3AI GATC 2 cut(s) 88, 460
Sau96I GGNCC 4 cut(s) 81, 318, 485, 494
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 2 cut(s) 230, 284
SfaNI GCATC 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 583
SfuI TTCGAA 1 cut(s) 599
SgrDI CGTCGACG 1 cut(s) 32
SinI GGWCC 3 cut(s) 318, 485, 494
SlaI CTCGAG 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 1 cut(s) 345
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 162
TaiI ACGT 3 cut(s) 63, 179, 581
TaqI TCGA 4 cut(s) 33, 146, 584, 599
TasI AATT 1 cut(s) 345
TauI GCSGC 6 cut(s) 23, 204, 304, 330, 333, 544
Tru1I TTAA 2 cut(s) 104, 672
Tru9I TTAA 2 cut(s) 104, 672
TscAI CASTG 2 cut(s) 412, 418
TseI GCWGC 4 cut(s) 261, 264, 355, 358
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 2 cut(s) 32, 90
TspRI CASTG 2 cut(s) 412, 418
VpaK11BI GGWCC 3 cut(s) 318, 485, 494
XapI RAATTY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.