Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014377

Physical Location & Seq

Genomic Coordinates Reverse (-)

24163808 .. 24165065

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1234600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGTCGCTGGAATCCTTCGACGAGTTACTCGACTTCCCCTCAGACGTCGGCGAAGAAGACAAAGACGAAGACTTTGAAGCCTCCAATGCGCTGCCTGGTGATGATCCTAGCTGTCAATTTTCTGAAACCGAGTGTTCAGAGGAAGTGCTAGAATGGTTGTCGAACAAAGACGCTTTCCCTCCTGTCGAGACATTCTTCGGCATTGACCTCAGCTTCGCAGGAATTCCGTGGGAAGGGGAGCAGCTTTCTACGAACCAATCTGATAACTCCGGCAAGGATGACATGACTAAAGCGGAAACACCAATGATGGCGAAGACGGTTGGGAGACAATGTCACCATTGTGGGACTCGAAAGACCTCGCGGTGGCAGGCTGGTCCCCTTGGACCGAAAACCCTGTGTAATGCTTGTTGGTGTTGGTACAAGTCCGTGATGATTGGGGGAAAATGCCAGCATTGCGGGACTCTGAACACCCCACAATGGCGGCGGGTTGGAAGGGATACTCTTTGTAATGCTTGTGCGATCAAGCTTAAGCACAGGTCTGAGATTCTTCGGAGAAAATGCCAGGATTGCGAGACTAAAAAAAGTACCCCGCAATGGCGGGAAGACTGTCCCAAGGGAAAGAAAGCCTTGTGTGATGCTTGTTATGTTAGGTACAAGTCCGACATTATTGGGAGGAAATGCCAGCGTTGTGGGGTAGGAAAAACCAAGCCGTGGCAGAATTGGGGAGAAGGTCCCCTCGGAAAGAATACACTCTGTAACAATTGTCATATAAGGTACAAGGTCGAGATCAATGGGAGAAAATGCCAGCATGCGGGACTGGAAACTCCCTGCGATGGCGCGCAGGTCCCCTTGGAACGAACACCCTGTGTGACAACTGTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

296

Amino Acids

33.07

Weight (kDa)

6.33

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	112 - 143	3.2e-09	GATA zinc finger
GATA	PF00320	150 - 180	1e-09	GATA zinc finger
GATA	PF00320	188 - 221	1e-08	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24050
fragaria_vesca	FvH4_4g05560
malus_domestica	MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis	pycom16g19570
rosa_chinensis	RchiOBHm_Chr4g0396671
rosa_laevigata	RLG00000009510
rosa_multiflora	Rmu_sc0006586.1_g000011
rosa_roxburghii	Rroxscaffold_5G00341530
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana	Rw4G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	835
AccB7I	CCANNNNNTGG	1 cut(s)	714
AccII	CGCG	2 cut(s)	364, 842
AciI	CCGC	8 cut(s)	296, 364, 459, 484, 487, 593, 601, 815
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	48
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	4 cut(s)	422, 589, 656, 779
AfiI	CCNNNNNNNGG	7 cut(s)	236, 366, 480, 597, 714, 814, 836
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	97, 564
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	4 cut(s)	114, 216, 247, 529
AluI	AGCT	4 cut(s)	114, 216, 247, 529
Alw26I	GTCTC	3 cut(s)	185, 322, 569
AlwI	GGATC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	94, 244
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	4 cut(s)	59, 91, 200, 232
AspLEI	GCGC	3 cut(s)	94, 842, 844
AspS9I	GGNCC	4 cut(s)	377, 386, 734, 847
AsuHPI	GGTGA	2 cut(s)	113, 329
AvaII	GGWCC	4 cut(s)	377, 386, 734, 847
BbsI	GAAGAC	4 cut(s)	66, 78, 323, 612
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	81, 256
BccI	CCATC	2 cut(s)	304, 830
BceAI	ACGGC	1 cut(s)	697
BciT130I	CCWGG	2 cut(s)	99, 566
BciVI	GTATCC	1 cut(s)	493
BcoDI	GTCTC	3 cut(s)	185, 322, 569
BfaI	CTAG	2 cut(s)	111, 152
BfrI	CTTAAG	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	835
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	3 cut(s)	95, 245, 485
BlsI	GCNGC	3 cut(s)	96, 246, 486
Bme1390I	CCNGG	2 cut(s)	99, 566
Bme18I	GGWCC	4 cut(s)	377, 386, 734, 847
BmgT120I	GGNCC	4 cut(s)	377, 386, 734, 847
BmiI	GGNNCC	3 cut(s)	379, 736, 849
BmrFI	CCNGG	2 cut(s)	99, 566
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	4 cut(s)	66, 78, 323, 612
Bpu10I	CCTNAGC	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	6 cut(s)	230, 382, 615, 713, 739, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	7 cut(s)	236, 366, 480, 597, 714, 814, 836
Bse1I	ACTGG	1 cut(s)	825
Bse3DI	GCAATG	2 cut(s)	454, 602
BseBI	CCWGG	2 cut(s)	99, 566
BseDI	CCNNGG	6 cut(s)	230, 382, 615, 713, 739, 852
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	7 cut(s)	236, 366, 480, 597, 714, 814, 836
BseMI	GCAATG	2 cut(s)	454, 602
BseMII	CTCAG	3 cut(s)	57, 226, 534
BseNI	ACTGG	1 cut(s)	825
BsePI	GCGCGC	1 cut(s)	840
BseXI	GCAGC	2 cut(s)	81, 256
Bsh1236I	CGCG	2 cut(s)	364, 842
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	7 cut(s)	361, 363, 475, 597, 720, 831, 833
BslI	CCNNNNNNNGG	7 cut(s)	236, 366, 480, 597, 714, 814, 836
BsmAI	GTCTC	3 cut(s)	185, 322, 569
BsmFI	GGGAC	7 cut(s)	361, 363, 475, 597, 720, 831, 833
Bsp143I	GATC	3 cut(s)	106, 522, 789
BspACI	CCGC	8 cut(s)	296, 364, 459, 484, 487, 593, 601, 815
BspCNI	CTCAG	3 cut(s)	56, 225, 535
BspFNI	CGCG	2 cut(s)	364, 842
BspLI	GGNNCC	3 cut(s)	379, 736, 849
BspMI	ACCTGC	1 cut(s)	835
BspPI	GGATC	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	530
BsrDI	GCAATG	2 cut(s)	454, 602
BsrI	ACTGG	1 cut(s)	825
BssECI	CCNNGG	6 cut(s)	230, 382, 615, 713, 739, 852
BssHII	GCGCGC	1 cut(s)	840
BssMI	GATC	3 cut(s)	106, 522, 789
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	3 cut(s)	382, 615, 852
Bst2UI	CCWGG	2 cut(s)	99, 566
Bst4CI	ACNGT	3 cut(s)	322, 611, 880
BstACI	GRCGYC	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	530
BstC8I	GCNNGC	6 cut(s)	372, 452, 686, 809, 813, 842
BstDEI	CTNAG	3 cut(s)	43, 212, 543
BstDSI	CCRYGG	2 cut(s)	230, 713
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	2 cut(s)	364, 842
BstHHI	GCGC	3 cut(s)	94, 842, 844
BstKTI	GATC	3 cut(s)	109, 525, 792
BstMAI	GTCTC	3 cut(s)	185, 322, 569
BstMBI	GATC	3 cut(s)	106, 522, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 456, 570
BstNI	CCWGG	2 cut(s)	99, 566
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	2 cut(s)	97, 564
BstUI	CGCG	2 cut(s)	364, 842
BstV1I	GCAGC	2 cut(s)	81, 256
BstV2I	GAAGAC	4 cut(s)	66, 78, 323, 612
BstXI	CCANNNNNNTGG	1 cut(s)	692
BsuI	GTATCC	1 cut(s)	493
BtgI	CCRYGG	2 cut(s)	230, 713
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	835
Cac8I	GCNNGC	6 cut(s)	372, 452, 686, 809, 813, 842
CfoI	GCGC	3 cut(s)	94, 842, 844
Cfr13I	GGNCC	4 cut(s)	377, 386, 734, 847
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	421, 588, 655, 778
CviAII	CATG	2 cut(s)	286, 812
CviJI	RGCY	8 cut(s)	83, 114, 216, 247, 374, 529, 629, 712
CviKI_1	RGCY	8 cut(s)	83, 114, 216, 247, 374, 529, 629, 712
CviQI	GTAC	4 cut(s)	421, 588, 655, 778
DdeI	CTNAG	3 cut(s)	43, 212, 543
DpnI	GATC	3 cut(s)	108, 524, 791
DpnII	GATC	3 cut(s)	106, 522, 789
DraIII	CACNNNGTG	1 cut(s)	869
Eco130I	CCWWGG	3 cut(s)	382, 615, 852
Eco47I	GGWCC	4 cut(s)	377, 386, 734, 847
EcoO109I	RGGNCCY	2 cut(s)	734, 847
EcoRI	GAATTC	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	97, 564
EcoT14I	CCWWGG	3 cut(s)	382, 615, 852
ErhI	CCWWGG	3 cut(s)	382, 615, 852
FaeI	CATG	2 cut(s)	289, 815
FaiI	YATR	5 cut(s)	287, 648, 771, 773, 813
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	7 cut(s)	361, 363, 475, 597, 720, 831, 833
FatI	CATG	2 cut(s)	285, 811
FauI	CCCGC	5 cut(s)	452, 480, 594, 600, 808
Fnu4HI	GCNGC	3 cut(s)	95, 245, 485
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	95, 245, 485
FspBI	CTAG	2 cut(s)	111, 152
GlaI	GCGC	3 cut(s)	93, 841, 843
GluI	GCNGC	3 cut(s)	95, 245, 485
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	3 cut(s)	94, 842, 844
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	289, 815
Hin6I	GCGC	3 cut(s)	92, 840, 842
HinP1I	GCGC	3 cut(s)	92, 840, 842
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	5 cut(s)	5, 14, 349, 463, 547
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	113, 329
Hpy188I	TCNGA	9 cut(s)	46, 127, 142, 265, 468, 544, 555, 664, 743
Hpy188III	TCNNGA	2 cut(s)	190, 787
Hpy99I	CGWCG	2 cut(s)	26, 53
HpyAV	CCTTC	4 cut(s)	28, 230, 489, 725
HpyCH4III	ACNGT	3 cut(s)	322, 611, 880
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 456, 570
HpyF3I	CTNAG	3 cut(s)	43, 212, 543
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	289, 815
HspAI	GCGC	3 cut(s)	92, 840, 842
Kzo9I	GATC	3 cut(s)	106, 522, 789
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	2 cut(s)	81, 256
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	111, 152
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	4 cut(s)	27, 335, 758, 871
MalI	GATC	3 cut(s)	108, 524, 791
MboI	GATC	3 cut(s)	106, 522, 789
MboII	GAAGA	7 cut(s)	68, 71, 83, 190, 328, 542, 617
MfeI	CAATTG	1 cut(s)	763
MluCI	AATT	4 cut(s)	119, 225, 721, 763
MlyI	GAGTC	3 cut(s)	14, 343, 457
MmeI	TCCRAC	2 cut(s)	472, 687
MnlI	CCTC	8 cut(s)	52, 94, 136, 192, 221, 370, 669, 749
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	342
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	99, 566
MunI	CAATTG	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	99, 566
MvnI	CGCG	2 cut(s)	364, 842
MwoI	GCNNNNNNNGC	3 cut(s)	89, 456, 570
NdeII	GATC	3 cut(s)	106, 522, 789
NlaIII	CATG	2 cut(s)	289, 815
NlaIV	GGNNCC	3 cut(s)	379, 736, 849
NmuCI	GTSAC	2 cut(s)	335, 871
NspI	RCATGY	1 cut(s)	815
OliI	CACNNNNGTG	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	815
PauI	GCGCGC	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	14, 547
PflFI	GACNNNGTC	1 cut(s)	333
PflMI	CCANNNNNTGG	1 cut(s)	714
PkrI	GCNGC	3 cut(s)	96, 246, 486
PleI	GAGTC	3 cut(s)	13, 343, 457
PpsI	GAGTC	3 cut(s)	13, 343, 457
PpuMI	RGGWCCY	2 cut(s)	734, 847
Psp5II	RGGWCCY	2 cut(s)	734, 847
Psp6I	CCWGG	2 cut(s)	97, 564
PspGI	CCWGG	2 cut(s)	97, 564
PspN4I	GGNNCC	3 cut(s)	379, 736, 849
PspPI	GGNCC	4 cut(s)	377, 386, 734, 847
PspPPI	RGGWCCY	2 cut(s)	734, 847
PsyI	GACNNNGTC	1 cut(s)	333
PteI	GCGCGC	1 cut(s)	840
RsaI	GTAC	4 cut(s)	422, 589, 656, 779
RsaNI	GTAC	4 cut(s)	421, 588, 655, 778
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	3 cut(s)	95, 245, 485
Sau3AI	GATC	3 cut(s)	106, 522, 789
Sau96I	GGNCC	4 cut(s)	377, 386, 734, 847
SchI	GAGTC	3 cut(s)	14, 343, 457
ScrFI	CCNGG	2 cut(s)	99, 566
SfaNI	GCATC	1 cut(s)	628
SinI	GGWCC	4 cut(s)	377, 386, 734, 847
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SphI	GCATGC	1 cut(s)	815
Sse9I	AATT	4 cut(s)	119, 225, 721, 763
SsiI	CCGC	8 cut(s)	296, 364, 459, 484, 487, 593, 601, 815
SspMI	CTAG	2 cut(s)	111, 152
StyD4I	CCNGG	2 cut(s)	97, 564
StyI	CCWWGG	3 cut(s)	382, 615, 852
TaaI	ACNGT	3 cut(s)	322, 611, 880
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	6 cut(s)	21, 33, 164, 189, 352, 786
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	4 cut(s)	119, 225, 721, 763
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	2 cut(s)	14, 547
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseFI	GTSAC	2 cut(s)	335, 871
TseI	GCWGC	2 cut(s)	94, 244
Tsp45I	GTSAC	2 cut(s)	335, 871
TspGWI	ACGGA	2 cut(s)	219, 418
Tth111I	GACNNNGTC	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	714
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	4 cut(s)	377, 386, 734, 847
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	815
XspI	CTAG	2 cut(s)	111, 152
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.