Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014377

Physical Location & Seq

Genomic Coordinates Forward (+)

4837038 .. 4838860

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTGCCACTCGACCCCGCGGCCTGCCTCGTCGACGACCTCCGTAACTTCCTCTCCGACGTCGCCGACCACGACGCCCGCCCCGACGATCCTTCCCGTCCGTTAGTCCCAACTGAGGAAGCAGAAGAAGAGCTGGAATGGATATCGAACAAGGACGCATTCCCGGCGGTGGAGACCTTCATTCTGTCGGAGCAAGTCGGCGGCATTGCGATTGCGAAGCACCAGAGCCCGGTCTCGGTGCTGGAGACTAGCACAAACAGCAGCAGCGCCTCCCTCATGAGCTCGTGTGGGGGGCTAAAGCCGCCCCACCGAGCACGAACCAAAGGCCGCCGGAGACGGAGCGAGATTCCCCCGCAGCAGCTCTTTTGGAACCAGCCCCCCATTGAGAGCAGCAAACCCAGCAGGAGTAGTGGCAGTGCCAGCAAGCTGGATATCGGGAGGAAATGCCTGCATTGCGGGACTGATCAGACCCCGCAATGGCGGGCGGGTCCTCATGGACCCAAGACCTTGTGTAATGCGTGTGGGGTGAGGTACAAGTCGGGGCGGCTTTGCCCCGAGTACCGCCCTGCGAGCAGCCCGAGTTTCTCGAGCCAGATGCATTCGAATTCCCACAGGAAGGTGTTGGAGATGAGGAAGCATAAGTATGGAGTCGGGATGGTTGTGAAGCCTGAGGATAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

228

Amino Acids

24.91

Weight (kDa)

8.85

Isoelectric Point (pI)

73.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	149 - 183	1.5e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24050
fragaria_vesca	FvH4_4g05560
malus_domestica	MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis	pycom16g19570
rosa_chinensis	RchiOBHm_Chr4g0396671
rosa_laevigata	RLG00000009510
rosa_multiflora	Rmu_sc0006586.1_g000011
rosa_roxburghii	Rroxscaffold_5G00341530
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana	Rw4G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	20
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	604
AcyI	GRCGYC	2 cut(s)	60, 75
AfaI	GTAC	2 cut(s)	533, 560
AfiI	CCNNNNNNNGG	6 cut(s)	115, 169, 229, 235, 477, 616
AluBI	AGCT	4 cut(s)	133, 282, 361, 427
AluI	AGCT	4 cut(s)	133, 282, 361, 427
Alw21I	GWGCWC	2 cut(s)	284, 316
Alw26I	GTCTC	4 cut(s)	167, 238, 239, 328
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	3 cut(s)	554, 577, 586
AoxI	GGCC	2 cut(s)	21, 325
ApeKI	GCWGC	6 cut(s)	261, 264, 355, 358, 390, 573
ApoI	RAATTY	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	488, 497
AsuC2I	CCSGG	2 cut(s)	164, 230
AsuHPI	GGTGA	1 cut(s)	538
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	3 cut(s)	554, 577, 586
AvaII	GGWCC	2 cut(s)	488, 497
AxyI	CCTNAGG	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	230, 284
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	284, 316
BbvI	GCAGC	6 cut(s)	273, 276, 367, 370, 402, 585
BccI	CCATC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	577, 611
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	2 cut(s)	164, 230
BcoDI	GTCTC	4 cut(s)	167, 238, 239, 328
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	164, 230
Bme18I	GGWCC	2 cut(s)	488, 497
BmeT110I	CYCGRG	3 cut(s)	554, 577, 586
BmgT120I	GGNCC	2 cut(s)	488, 497
BmiI	GGNNCC	4 cut(s)	6, 371, 489, 499
BmrFI	CCNGG	2 cut(s)	164, 230
BmsI	GCATC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	164, 230
BsaHI	GRCGYC	2 cut(s)	60, 75
BsaI	GGTCTC	2 cut(s)	167, 238
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 169, 229, 235, 477, 616
Bse21I	CCTNAGG	1 cut(s)	669
Bse3DI	GCAATG	3 cut(s)	204, 451, 482
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	6 cut(s)	115, 169, 229, 235, 477, 616
BseMI	GCAATG	3 cut(s)	204, 451, 482
BseMII	CTCAG	2 cut(s)	105, 660
BseXI	GCAGC	6 cut(s)	273, 276, 367, 370, 402, 585
BseYI	CCCAGC	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	23, 327
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	284, 316
BsiHKCI	CYCGRG	3 cut(s)	554, 577, 586
BsiSI	CCGG	3 cut(s)	164, 230, 331
BslFI	GGGAC	2 cut(s)	92, 472
BslI	CCNNNNNNNGG	6 cut(s)	115, 169, 229, 235, 477, 616
BsmAI	GTCTC	4 cut(s)	167, 238, 239, 328
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	92, 472
BsmI	GAATGC	2 cut(s)	158, 598
BsnI	GGCC	2 cut(s)	23, 327
Bso31I	GGTCTC	2 cut(s)	167, 238
BsoBI	CYCGRG	3 cut(s)	554, 577, 586
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	3 cut(s)	230, 284, 316
Bsp143I	GATC	2 cut(s)	88, 463
BspANI	GGCC	2 cut(s)	23, 327
BspCNI	CTCAG	2 cut(s)	106, 661
BspFNI	CGCG	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	4 cut(s)	6, 371, 489, 499
BspPI	GGATC	1 cut(s)	83
BspQI	GCTCTTC	1 cut(s)	123
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	167, 238
BsrDI	GCAATG	3 cut(s)	204, 451, 482
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	88, 463
BssNI	GRCGYC	2 cut(s)	60, 75
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	2 cut(s)	60, 75
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	7 cut(s)	25, 79, 421, 425, 449, 483, 571
BstDEI	CTNAG	2 cut(s)	114, 669
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	660
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	91, 466
BstMAI	GTCTC	4 cut(s)	167, 238, 239, 328
BstMBI	GATC	2 cut(s)	88, 463
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 258, 301, 399, 420, 453, 570
BstSCI	CCNGG	2 cut(s)	162, 228
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	6 cut(s)	273, 276, 367, 370, 402, 585
BstXI	CCANNNNNNTGG	1 cut(s)	427
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	23, 327
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	660
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	7 cut(s)	25, 79, 421, 425, 449, 483, 571
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	488, 497
Cfr42I	CCGCGG	1 cut(s)	21
CseI	GACGC	2 cut(s)	83, 164
Csp6I	GTAC	2 cut(s)	532, 559
CviAII	CATG	2 cut(s)	277, 494
CviQI	GTAC	2 cut(s)	532, 559
DdeI	CTNAG	2 cut(s)	114, 669
DpnI	GATC	2 cut(s)	90, 465
DpnII	GATC	2 cut(s)	88, 463
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	230, 284
Eco31I	GGTCTC	2 cut(s)	167, 238
Eco32I	GATATC	2 cut(s)	144, 433
Eco47I	GGWCC	2 cut(s)	488, 497
Eco53kI	GAGCTC	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	669
Eco88I	CYCGRG	3 cut(s)	554, 577, 586
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	604
EcoRV	GATATC	2 cut(s)	144, 433
EcoT22I	ATGCAT	1 cut(s)	600
EcoT38I	GRGCYC	2 cut(s)	230, 284
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	2 cut(s)	280, 497
FaiI	YATR	4 cut(s)	278, 495, 639, 645
FaqI	GGGAC	2 cut(s)	92, 472
FatI	CATG	2 cut(s)	276, 493
FauI	CCCGC	7 cut(s)	25, 86, 360, 449, 474, 478, 480
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	2 cut(s)	230, 284
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	268
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	23, 327
HapII	CCGG	3 cut(s)	164, 230, 331
HgaI	GACGC	2 cut(s)	83, 164
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	2 cut(s)	60, 75
Hin1II	CATG	2 cut(s)	280, 497
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	346, 648
HpaII	CCGG	3 cut(s)	164, 230, 331
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	58, 190, 468
Hpy188III	TCNNGA	4 cut(s)	277, 436, 586, 652
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	6 cut(s)	35, 38, 62, 65, 77, 89
HpyAV	CCTTC	3 cut(s)	102, 187, 610
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	451, 598
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 258, 301, 399, 420, 453, 570
HpyF3I	CTNAG	2 cut(s)	114, 669
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	60, 75
Hsp92II	CATG	2 cut(s)	280, 497
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	463
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	88, 463
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	190, 339
Lsp1109I	GCAGC	6 cut(s)	273, 276, 367, 370, 402, 585
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	90, 465
MboI	GATC	2 cut(s)	88, 463
MboII	GAAGA	2 cut(s)	137, 140
MhlI	GDGCHC	3 cut(s)	230, 284, 316
MluCI	AATT	1 cut(s)	604
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	3 cut(s)	81, 168, 603
Mph1103I	ATGCAT	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	164, 230, 331
MspR9I	CCNGG	2 cut(s)	164, 230
Mva1269I	GAATGC	2 cut(s)	158, 598
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	7 cut(s)	164, 258, 301, 399, 420, 453, 570
NciI	CCSGG	2 cut(s)	164, 230
NdeII	GATC	2 cut(s)	88, 463
NlaIII	CATG	2 cut(s)	280, 497
NlaIV	GGNNCC	4 cut(s)	6, 371, 489, 499
NsiI	ATGCAT	1 cut(s)	600
NspV	TTCGAA	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	586
PagI	TCATGA	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 81
PctI	GAATGC	2 cut(s)	158, 598
PfeI	GAWTC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PpuMI	RGGWCCY	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	398
PspN4I	GGNNCC	4 cut(s)	6, 371, 489, 499
PspPI	GGNCC	2 cut(s)	488, 497
PspPPI	RGGWCCY	1 cut(s)	488
RsaI	GTAC	2 cut(s)	533, 560
RsaNI	GTAC	2 cut(s)	532, 559
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	284
SacII	CCGCGG	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	88, 463
Sau96I	GGNCC	2 cut(s)	488, 497
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	2 cut(s)	164, 230
SduI	GDGCHC	3 cut(s)	230, 284, 316
SfaNI	GCATC	1 cut(s)	585
Sfr274I	CTCGAG	1 cut(s)	586
Sfr303I	CCGCGG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	602
SgrBI	CCGCGG	1 cut(s)	21
SgrDI	CGTCGACG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	488, 497
SlaI	CTCGAG	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
Sse9I	AATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	162, 228
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	12, 33, 146, 587, 602
TasI	AATT	1 cut(s)	604
TauI	GCSGC	5 cut(s)	23, 204, 304, 330, 547
TfiI	GAWTC	1 cut(s)	346
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	6 cut(s)	261, 264, 355, 358, 390, 573
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	3 cut(s)	32, 90, 352
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	488, 497
XapI	RAATTY	1 cut(s)	604
XhoI	CTCGAG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.