Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014377

Physical Location & Seq

Genomic Coordinates Forward (+)

12796864 .. 12799062

Gene Structure 2199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36904

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGTGCCACTTGACCCAGCGTCTTGTCTCGTCGACGACCTCCGTAACTTCTTGTCCGACGTCGGCGACCACGACGGCCGGCCCGATGATCCTAGCCGTCCGTTAATCGCAACTGAGGAAGCAGAAGAGGAGCTGGAATGGATATCGAACAAGGACGCTTTCCCGGCGGTGGAAACGTTCATTCTGTCGGAGCAGGTGGGCGGCATTGCGATTGCCAAGCACCAGAGTCCGGTCTCGGTGCTGGAGAACAGCACAAACAGCAGCAGCGCCTCCCTCATGAGCTCGTGTGGGGGGCTAAAGCCGCCCCACAGAGCGCGAACCAAAGGCCGCCGCAGGCGGAGTGAAATTCCTGCACAGCAGCTATTTTGGAACCAACCGATTGAGAGCAAACCCAGCAGGAGTCACAGTGCCAGTGCCAGCGCCAGCAAGCTGGATATTGGGAGAAAGTGCCTGCATTGCGGGACTGATCAGACACCGCAATGGCGGGCGGGTCCCTTTGGACCCAAAACCTTGTGTAATGCCTGTGGGGTGAGGTACAAGTCAGGGCGGCTTTGCCCCGAGTACCGCCCTGCGAGCAGCCCAACGTTCTCGAGCGAGATGCATTCGAACTCCCACAGGAAGGTATTGGAGATGAGGAAGCAAAAGTATGGAATGGGGATGGTTGTGAAGCCTGAGGATACAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

228

Amino Acids

25.02

Weight (kDa)

8.47

Isoelectric Point (pI)

70.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	150 - 184	3.9e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24050
fragaria_vesca	FvH4_4g05560
malus_domestica	MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis	pycom16g19570
rosa_chinensis	RchiOBHm_Chr4g0396671
rosa_laevigata	RLG00000009510
rosa_multiflora	Rmu_sc0006586.1_g000011
rosa_roxburghii	Rroxscaffold_5G00341530
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana	Rw4G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	316
AclI	AACGTT	2 cut(s)	176, 584
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	536, 563
AfiI	CCNNNNNNNGG	3 cut(s)	169, 229, 619
AhdI	GACNNNNNGTC	1 cut(s)	19
AluBI	AGCT	4 cut(s)	133, 282, 361, 430
AluI	AGCT	4 cut(s)	133, 282, 361, 430
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	2 cut(s)	32, 238
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	2 cut(s)	557, 589
AoxI	GGCC	3 cut(s)	76, 80, 325
ApeKI	GCWGC	4 cut(s)	261, 264, 358, 576
ApoI	RAATTY	1 cut(s)	345
AspLEI	GCGC	3 cut(s)	269, 316, 422
AspS9I	GGNCC	3 cut(s)	81, 491, 500
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	541
AsuII	TTCGAA	1 cut(s)	605
AvaI	CYCGRG	2 cut(s)	557, 589
AvaII	GGWCC	2 cut(s)	491, 500
AxyI	CCTNAGG	1 cut(s)	672
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	273, 276, 370, 588
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	2 cut(s)	81, 91
BcgI	CGANNNNNNTGC	2 cut(s)	580, 614
BciVI	GTATCC	1 cut(s)	670
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	32, 238
BfaI	CTAG	1 cut(s)	93
BfoI	RGCGCY	2 cut(s)	270, 423
BfuAI	ACCTGC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	9 cut(s)	202, 262, 265, 302, 328, 331, 359, 548, 577
BlsI	GCNGC	9 cut(s)	203, 263, 266, 303, 329, 332, 360, 549, 578
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	2 cut(s)	491, 500
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	2 cut(s)	557, 589
BmgT120I	GGNCC	3 cut(s)	81, 491, 500
BmiI	GGNNCC	5 cut(s)	6, 371, 492, 493, 502
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 229, 619
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	411
Bse21I	CCTNAGG	1 cut(s)	672
Bse3DI	GCAATG	3 cut(s)	204, 454, 485
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	3 cut(s)	169, 229, 619
BseMI	GCAATG	3 cut(s)	204, 454, 485
BseMII	CTCAG	2 cut(s)	105, 663
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	143
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	273, 276, 370, 588
BseYI	CCCAGC	2 cut(s)	16, 392
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	78, 82, 327
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	2 cut(s)	557, 589
BsiSI	CCGG	3 cut(s)	79, 164, 230
BslFI	GGGAC	2 cut(s)	475, 477
BslI	CCNNNNNNNGG	3 cut(s)	169, 229, 619
BsmAI	GTCTC	2 cut(s)	32, 238
BsmFI	GGGAC	2 cut(s)	475, 477
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	3 cut(s)	78, 82, 327
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	2 cut(s)	557, 589
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	88, 466
BspANI	GGCC	3 cut(s)	78, 82, 327
BspCNI	CTCAG	2 cut(s)	106, 664
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	5 cut(s)	6, 371, 492, 493, 502
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	3 cut(s)	204, 454, 485
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	2 cut(s)	88, 466
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	8 cut(s)	80, 335, 418, 424, 428, 452, 486, 574
BstDEI	CTNAG	2 cut(s)	114, 672
BstF5I	GGATG	1 cut(s)	663
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	2 cut(s)	270, 423
BstHHI	GCGC	3 cut(s)	269, 316, 422
BstKTI	GATC	2 cut(s)	91, 469
BstMAI	GTCTC	2 cut(s)	32, 238
BstMBI	GATC	2 cut(s)	88, 466
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 258, 301, 393, 456, 573
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	4 cut(s)	273, 276, 370, 588
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstZI	CGGCCG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	672
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	78, 82, 327
BtsCI	GGATG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	412, 418
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	8 cut(s)	80, 335, 418, 424, 428, 452, 486, 574
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	3 cut(s)	269, 316, 422
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	81, 491, 500
CseI	GACGC	2 cut(s)	9, 164
Csp6I	GTAC	2 cut(s)	535, 562
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	2 cut(s)	535, 562
DdeI	CTNAG	2 cut(s)	114, 672
DpnI	GATC	2 cut(s)	90, 468
DpnII	GATC	2 cut(s)	88, 466
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	76
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	282
EclXI	CGGCCG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	238
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	491, 500
Eco52I	CGGCCG	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	672
Eco88I	CYCGRG	2 cut(s)	557, 589
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	1 cut(s)	280
FaiI	YATR	2 cut(s)	278, 648
FaqI	GGGAC	2 cut(s)	475, 477
FatI	CATG	1 cut(s)	276
FauI	CCCGC	3 cut(s)	452, 477, 481
FbaI	TGATCA	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	9 cut(s)	202, 262, 265, 302, 328, 331, 359, 548, 577
FokI	GGATG	1 cut(s)	670
FriOI	GRGCYC	1 cut(s)	284
FseI	GGCCGGCC	1 cut(s)	82
Fsp4HI	GCNGC	9 cut(s)	202, 262, 265, 302, 328, 331, 359, 548, 577
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	3 cut(s)	268, 315, 421
GluI	GCNGC	9 cut(s)	202, 262, 265, 302, 328, 331, 359, 548, 577
GsaI	CCCAGC	2 cut(s)	20, 396
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	2 cut(s)	270, 423
HaeIII	GGCC	3 cut(s)	78, 82, 327
HapII	CCGG	3 cut(s)	79, 164, 230
HgaI	GACGC	2 cut(s)	9, 164
HhaI	GCGC	3 cut(s)	269, 316, 422
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	3 cut(s)	267, 314, 420
HinP1I	GCGC	3 cut(s)	267, 314, 420
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	226, 400
HpaII	CCGG	3 cut(s)	79, 164, 230
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	58, 190, 471
Hpy188III	TCNNGA	2 cut(s)	277, 589
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	5 cut(s)	35, 38, 62, 65, 77
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	3 cut(s)	60, 176, 584
HpyCH4V	TGCA	3 cut(s)	353, 454, 601
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 258, 301, 393, 456, 573
HpyF3I	CTNAG	2 cut(s)	114, 672
HpySE526I	ACGT	3 cut(s)	60, 176, 584
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	3 cut(s)	267, 314, 420
KflI	GGGWCCC	1 cut(s)	491
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	88, 466
LmnI	GCTCC	2 cut(s)	130, 190
Lsp1109I	GCAGC	4 cut(s)	273, 276, 370, 588
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	3 cut(s)	60, 176, 584
MaeIII	GTNAC	2 cut(s)	44, 401
MalI	GATC	2 cut(s)	90, 468
MboI	GATC	2 cut(s)	88, 466
MboII	GAAGA	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	235, 409
MmeI	TCCRAC	2 cut(s)	81, 168
MnlI	CCTC	8 cut(s)	50, 109, 121, 280, 284, 525, 627, 667
Mph1103I	ATGCAT	1 cut(s)	603
MroNI	GCCGGC	1 cut(s)	78
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	478
MspI	CCGG	3 cut(s)	79, 164, 230
MspR9I	CCNGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	601
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	6 cut(s)	164, 258, 301, 393, 456, 573
NaeI	GCCGGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	2 cut(s)	88, 466
NgoMIV	GCCGGC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	5 cut(s)	6, 371, 492, 493, 502
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	603
NspV	TTCGAA	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	589
PagI	TCATGA	1 cut(s)	276
PaqCI	CACCTGC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 81
PctI	GAATGC	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	80
PkrI	GCNGC	9 cut(s)	203, 263, 266, 303, 329, 332, 360, 549, 578
PleI	GAGTC	2 cut(s)	234, 408
PpsI	GAGTC	2 cut(s)	234, 408
PpuMI	RGGWCCY	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	284
Psp1406I	AACGTT	2 cut(s)	176, 584
Psp5II	RGGWCCY	1 cut(s)	491
PspFI	CCCAGC	2 cut(s)	16, 392
PspN4I	GGNNCC	5 cut(s)	6, 371, 492, 493, 502
PspPI	GGNCC	3 cut(s)	81, 491, 500
PspPPI	RGGWCCY	1 cut(s)	491
RigI	GGCCGGCC	1 cut(s)	82
RsaI	GTAC	2 cut(s)	536, 563
RsaNI	GTAC	2 cut(s)	535, 562
RseI	CAYNNNNRTG	1 cut(s)	478
SacI	GAGCTC	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	9 cut(s)	202, 262, 265, 302, 328, 331, 359, 548, 577
Sau3AI	GATC	2 cut(s)	88, 466
Sau96I	GGNCC	3 cut(s)	81, 491, 500
SchI	GAGTC	2 cut(s)	235, 409
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	588
Sfr274I	CTCGAG	1 cut(s)	589
SfuI	TTCGAA	1 cut(s)	605
SgrDI	CGTCGACG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	491, 500
SlaI	CTCGAG	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
Sse9I	AATT	1 cut(s)	345
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	3 cut(s)	63, 179, 587
TaqI	TCGA	4 cut(s)	33, 146, 590, 605
TasI	AATT	1 cut(s)	345
TauI	GCSGC	5 cut(s)	204, 304, 330, 333, 550
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	2 cut(s)	412, 418
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	4 cut(s)	261, 264, 358, 576
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	2 cut(s)	32, 90
TspRI	CASTG	2 cut(s)	412, 418
VpaK11BI	GGWCC	2 cut(s)	491, 500
XapI	RAATTY	1 cut(s)	345
XhoI	CTCGAG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.