Rh4AG071200

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
14646255 .. 14647518
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG071200.1

Sequence Viewer

Length: 693 bp
ATGGTGCCACTTGACCCAGCGTCTTGTCTCGTCGACGACCTCCGTAACTTCTTGTCCGACGTCGGCGACCACGACGGCCGGCCCGATGATCCTAGCCGTCCGTTAATCGCAACTGAGGAAGCAGAGGAGGAGCTGGAATGGATATCGAACAAGGACGCGTTCCCGGCGGTGGAAACGTTCATTCTGTCGGAGCAGGTGGGCGGCATTGCGAATGCCAAGCACCAGAGCCCGGTCTCGGTGCTGGAGAACAGCACAAACAGCAGCAGCGCCTCCCTCATGAGCTCGTGTGGGGGGCTAAAGCCGCCCCACAGAGCGCGAACCAAAGGCCGCCGCAGGCGGAGTGAAATTCCTGCGCAGCAGCTATTTTGGAACCAACCAATCGAGAGCAAACCCAGCAGGAGTCACAGTGCCAGTGCCAGTGCCAGTGCTAGCAAGCTGGATATTGGGAGAAAGTGCCTGCATTGCGGGACTGATCAGACACCGCAATGGCGGGCAGGTCCCTGTGGACCCAAAACCTTGTGTAATGCCTGTGGGGTGAGGTACAAGTCAGGGCGGCTTTGCCCCGAGTACCGCCCTGCGAGTAGCCCAACGTTCTCGAGCGAGATGCATTCGAACTCCCACAGGAAGGTATTGGAGATGAGGAAGCAAAAGTATGGAATGGGGATGGTTGTGAAGCCTGAGGATAAAGGTTAG

Protein Analysis

230

Amino Acids

25.16

Weight (kDa)

8.62

Isoelectric Point (pI)

68.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 152 - 186 1.2e-13 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014377)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
AatII GACGTC 1 cut(s) 63
Acc16I TGCGCA 1 cut(s) 354
Acc36I ACCTGC 2 cut(s) 184, 485
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 33
AccII CGCG 2 cut(s) 158, 316
AclI AACGTT 2 cut(s) 176, 590
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 2 cut(s) 542, 569
AfiI CCNNNNNNNGG 4 cut(s) 169, 229, 235, 625
AflIII ACRYGT 1 cut(s) 156
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 4 cut(s) 133, 282, 361, 436
AluI AGCT 4 cut(s) 133, 282, 361, 436
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 32, 238
AlwI GGATC 1 cut(s) 83
Ama87I CYCGRG 2 cut(s) 563, 595
AoxI GGCC 3 cut(s) 76, 80, 325
ApeKI GCWGC 4 cut(s) 261, 264, 355, 358
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 3 cut(s) 269, 316, 355
AspS9I GGNCC 3 cut(s) 81, 497, 506
AsuC2I CCSGG 2 cut(s) 164, 230
AsuHPI GGTGA 1 cut(s) 547
AsuII TTCGAA 1 cut(s) 611
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 563, 595
AvaII GGWCC 2 cut(s) 497, 506
AxyI CCTNAGG 1 cut(s) 678
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 230, 284
BauI CACGAG 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 4 cut(s) 273, 276, 367, 370
BccI CCATC 1 cut(s) 658
BceAI ACGGC 2 cut(s) 81, 91
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 164, 230
BcoDI GTCTC 2 cut(s) 32, 238
BfaI CTAG 2 cut(s) 93, 429
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 2 cut(s) 184, 485
BisI GCNGC 9 cut(s) 202, 262, 265, 302, 328, 331, 356, 359, 554
BlsI GCNGC 9 cut(s) 203, 263, 266, 303, 329, 332, 357, 360, 555
Bme1390I CCNGG 2 cut(s) 164, 230
Bme18I GGWCC 2 cut(s) 497, 506
BmeRI GACNNNNNGTC 1 cut(s) 19
BmeT110I CYCGRG 2 cut(s) 563, 595
BmgT120I GGNCC 3 cut(s) 81, 497, 506
BmiI GGNNCC 4 cut(s) 6, 371, 499, 508
BmrFI CCNGG 2 cut(s) 164, 230
BmsI GCATC 1 cut(s) 594
BmtI GCTAGC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 611
BpuMI CCSGG 2 cut(s) 164, 230
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 229, 235, 625
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 3 cut(s) 411, 417, 423
Bse21I CCTNAGG 1 cut(s) 678
Bse3DI GCAATG 3 cut(s) 204, 460, 491
BseGI GGATG 1 cut(s) 669
BseLI CCNNNNNNNGG 4 cut(s) 169, 229, 235, 625
BseMI GCAATG 3 cut(s) 204, 460, 491
BseMII CTCAG 2 cut(s) 105, 669
BseNI ACTGG 3 cut(s) 411, 417, 423
BseRI GAGGAG 2 cut(s) 140, 143
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 4 cut(s) 273, 276, 367, 370
BseYI CCCAGC 2 cut(s) 16, 392
Bsh1236I CGCG 2 cut(s) 158, 316
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 3 cut(s) 78, 82, 327
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 2 cut(s) 563, 595
BsiSI CCGG 3 cut(s) 79, 164, 230
BslFI GGGAC 2 cut(s) 481, 483
BslI CCNNNNNNNGG 4 cut(s) 169, 229, 235, 625
BsmAI GTCTC 2 cut(s) 32, 238
BsmFI GGGAC 2 cut(s) 481, 483
BsmI GAATGC 2 cut(s) 217, 607
BsnI GGCC 3 cut(s) 78, 82, 327
Bso31I GGTCTC 1 cut(s) 238
BsoBI CYCGRG 2 cut(s) 563, 595
Bsp119I TTCGAA 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 230, 284
Bsp143I GATC 2 cut(s) 88, 472
BspANI GGCC 3 cut(s) 78, 82, 327
BspCNI CTCAG 2 cut(s) 106, 670
BspFNI CGCG 2 cut(s) 158, 316
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 4 cut(s) 6, 371, 499, 508
BspMI ACCTGC 2 cut(s) 184, 485
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 238
BsrDI GCAATG 3 cut(s) 204, 460, 491
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 3 cut(s) 411, 417, 423
BssAI RCCGGY 1 cut(s) 78
BssMI GATC 2 cut(s) 88, 472
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 6 cut(s) 80, 335, 430, 434, 458, 492
BstDEI CTNAG 2 cut(s) 114, 678
BstF5I GGATG 1 cut(s) 669
BstFNI CGCG 2 cut(s) 158, 316
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 269, 316, 355
BstKTI GATC 2 cut(s) 91, 475
BstMAI GTCTC 2 cut(s) 32, 238
BstMBI GATC 2 cut(s) 88, 472
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 5 cut(s) 164, 258, 301, 393, 462
BstSCI CCNGG 2 cut(s) 162, 228
BstUI CGCG 2 cut(s) 158, 316
BstV1I GCAGC 4 cut(s) 273, 276, 367, 370
BstZI CGGCCG 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 678
BsuRI GGCC 3 cut(s) 78, 82, 327
BtsCI GGATG 1 cut(s) 669
BtsIMutI CAGTG 4 cut(s) 412, 418, 424, 430
BveI ACCTGC 2 cut(s) 184, 485
Cac8I GCNNGC 6 cut(s) 80, 335, 430, 434, 458, 492
CciI TCATGA 1 cut(s) 276
CfoI GCGC 3 cut(s) 269, 316, 355
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 81, 497, 506
CseI GACGC 2 cut(s) 9, 164
Csp6I GTAC 2 cut(s) 541, 568
CviAII CATG 1 cut(s) 277
CviQI GTAC 2 cut(s) 541, 568
DdeI CTNAG 2 cut(s) 114, 678
DpnI GATC 2 cut(s) 90, 474
DpnII GATC 2 cut(s) 88, 472
DriI GACNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
Eam1105I GACNNNNNGTC 1 cut(s) 19
EciI GGCGGA 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 282
EclXI CGGCCG 1 cut(s) 76
Eco24I GRGCYC 2 cut(s) 230, 284
Eco31I GGTCTC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 497, 506
Eco52I CGGCCG 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 282
Eco81I CCTNAGG 1 cut(s) 678
Eco88I CYCGRG 2 cut(s) 563, 595
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 497
EcoRV GATATC 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 609
EcoT38I GRGCYC 2 cut(s) 230, 284
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 278, 654
FaqI GGGAC 2 cut(s) 481, 483
FatI CATG 1 cut(s) 276
FauI CCCGC 2 cut(s) 458, 483
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 9 cut(s) 202, 262, 265, 302, 328, 331, 356, 359, 554
FokI GGATG 1 cut(s) 676
FriOI GRGCYC 2 cut(s) 230, 284
FseI GGCCGGCC 1 cut(s) 82
Fsp4HI GCNGC 9 cut(s) 202, 262, 265, 302, 328, 331, 356, 359, 554
FspBI CTAG 2 cut(s) 93, 429
FspI TGCGCA 1 cut(s) 354
GlaI GCGC 3 cut(s) 268, 315, 354
GluI GCNGC 9 cut(s) 202, 262, 265, 302, 328, 331, 356, 359, 554
GsaI CCCAGC 2 cut(s) 20, 396
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 3 cut(s) 78, 82, 327
HapII CCGG 3 cut(s) 79, 164, 230
HgaI GACGC 2 cut(s) 9, 164
HhaI GCGC 3 cut(s) 269, 316, 355
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 3 cut(s) 267, 314, 353
HinP1I GCGC 3 cut(s) 267, 314, 353
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 1 cut(s) 400
HpaII CCGG 3 cut(s) 79, 164, 230
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 2 cut(s) 34, 506
Hpy188I TCNGA 3 cut(s) 58, 190, 477
Hpy188III TCNNGA 3 cut(s) 277, 382, 595
Hpy8I GTNNAC 2 cut(s) 34, 506
Hpy99I CGWCG 5 cut(s) 35, 38, 62, 65, 77
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 3 cut(s) 60, 176, 590
HpyCH4V TGCA 2 cut(s) 460, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 258, 301, 393, 462
HpyF3I CTNAG 2 cut(s) 114, 678
HpySE526I ACGT 3 cut(s) 60, 176, 590
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 3 cut(s) 267, 314, 353
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 2 cut(s) 88, 472
LmnI GCTCC 2 cut(s) 130, 190
Lsp1109I GCAGC 4 cut(s) 273, 276, 367, 370
LweI GCATC 1 cut(s) 594
MaeI CTAG 2 cut(s) 93, 429
MaeII ACGT 3 cut(s) 60, 176, 590
MaeIII GTNAC 2 cut(s) 44, 401
MalI GATC 2 cut(s) 90, 474
MboI GATC 2 cut(s) 88, 472
MhlI GDGCHC 2 cut(s) 230, 284
MluCI AATT 1 cut(s) 345
MluI ACGCGT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 2 cut(s) 81, 168
MnlI CCTC 9 cut(s) 50, 109, 118, 121, 280, 284, 531, 633, 673
Mph1103I ATGCAT 1 cut(s) 609
MroNI GCCGGC 1 cut(s) 78
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 484
MspI CCGG 3 cut(s) 79, 164, 230
MspR9I CCNGG 2 cut(s) 164, 230
Mva1269I GAATGC 2 cut(s) 217, 607
MvnI CGCG 2 cut(s) 158, 316
MwoI GCNNNNNNNGC 5 cut(s) 164, 258, 301, 393, 462
NaeI GCCGGC 1 cut(s) 80
NciI CCSGG 2 cut(s) 164, 230
NdeII GATC 2 cut(s) 88, 472
NgoMIV GCCGGC 1 cut(s) 78
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 4 cut(s) 6, 371, 499, 508
NmuCI GTSAC 1 cut(s) 401
NsbI TGCGCA 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 609
NspV TTCGAA 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 595
PagI TCATGA 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 184
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 81
PctI GAATGC 2 cut(s) 217, 607
PdiI GCCGGC 1 cut(s) 80
PkrI GCNGC 9 cut(s) 203, 263, 266, 303, 329, 332, 357, 360, 555
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 284
Psp1406I AACGTT 2 cut(s) 176, 590
Psp5II RGGWCCY 1 cut(s) 497
PspFI CCCAGC 2 cut(s) 16, 392
PspN4I GGNNCC 4 cut(s) 6, 371, 499, 508
PspPI GGNCC 3 cut(s) 81, 497, 506
PspPPI RGGWCCY 1 cut(s) 497
RigI GGCCGGCC 1 cut(s) 82
RsaI GTAC 2 cut(s) 542, 569
RsaNI GTAC 2 cut(s) 541, 568
RseI CAYNNNNRTG 1 cut(s) 484
SacI GAGCTC 1 cut(s) 284
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 9 cut(s) 202, 262, 265, 302, 328, 331, 356, 359, 554
Sau3AI GATC 2 cut(s) 88, 472
Sau96I GGNCC 3 cut(s) 81, 497, 506
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 164, 230
SduI GDGCHC 2 cut(s) 230, 284
SfaNI GCATC 1 cut(s) 594
Sfr274I CTCGAG 1 cut(s) 595
SfuI TTCGAA 1 cut(s) 611
SgrDI CGTCGACG 1 cut(s) 32
SinI GGWCC 2 cut(s) 497, 506
SlaI CTCGAG 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 1 cut(s) 345
SspMI CTAG 2 cut(s) 93, 429
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 162, 228
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 3 cut(s) 63, 179, 593
TaqI TCGA 5 cut(s) 33, 146, 381, 596, 611
TasI AATT 1 cut(s) 345
TauI GCSGC 5 cut(s) 204, 304, 330, 333, 556
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 4 cut(s) 412, 418, 424, 430
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 4 cut(s) 261, 264, 355, 358
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 2 cut(s) 32, 90
TspRI CASTG 4 cut(s) 412, 418, 424, 430
VpaK11BI GGWCC 2 cut(s) 497, 506
XapI RAATTY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 93, 429
ZraI GACGTC 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.