Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014377

Physical Location & Seq

Genomic Coordinates Reverse (-)

24170820 .. 24171050

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1234700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGATCGGGAGAAAATGCCAGCATTGTGGGACTGAAAAGACCTCTCAATGGCGACCAGGTCCCCATGGAAATAAAACCTTGTGTGATGCTTGTGGGGTTAGGTACCGAAAGTCTGGGAAGCTTGTCCCAGAATACCGCCCAGCAAGTAGCCCAACTTTCTCGAGGGAGTTGCATTTGAATAGGCTCAGCAAGGTAACAGTGAGTACGCATTTTCGTGTTGTTTCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

77

Amino Acids

8.58

Weight (kDa)

10.24

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	6 - 40	2.8e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0014377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24050
fragaria_vesca	FvH4_4g05560
malus_domestica	MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis	pycom16g19570
rosa_chinensis	RchiOBHm_Chr4g0396671
rosa_laevigata	RLG00000009510
rosa_multiflora	Rmu_sc0006586.1_g000011
rosa_roxburghii	Rroxscaffold_5G00341530
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana	Rw4G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	102
AciI	CCGC	1 cut(s)	136
AfaI	GTAC	2 cut(s)	104, 205
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	160
Asp718I	GGTACC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	102
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	57
BlpI	GCTNAGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	61, 104
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	160
BslFI	GGGAC	3 cut(s)	43, 45, 110
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmFI	GGGAC	3 cut(s)	43, 45, 110
BsoBI	CYCGRG	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	61, 104
BspT107I	GGYRCC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	64
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	103, 204
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	3 cut(s)	121, 150, 184
CviKI_1	RGCY	3 cut(s)	121, 150, 184
CviQI	GTAC	2 cut(s)	103, 204
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	68
FaiI	YATR	1 cut(s)	66
FaqI	GGGAC	3 cut(s)	43, 45, 110
FatI	CATG	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	7, 160
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	6 cut(s)	32, 42, 69, 99, 141, 153
LweI	GCATC	1 cut(s)	76
MabI	ACCWGGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MnlI	CCTC	2 cut(s)	52, 156
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	61, 104
PaeR7I	CTCGAG	1 cut(s)	160
PflFI	GACNNNGTC	1 cut(s)	57
PpuMI	RGGWCCY	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	61, 104
PspPI	GGNCC	1 cut(s)	59
PspPPI	RGGWCCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	104, 205
RsaNI	GTAC	2 cut(s)	103, 204
RseI	CAYNNNNRTG	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	6 cut(s)	44, 61, 80, 104, 123, 195
SexAI	ACCWGGT	1 cut(s)	55
SfaNI	GCATC	1 cut(s)	76
Sfr274I	CTCGAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
SsiI	CCGC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	204
TspRI	CASTG	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.