Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014377

Physical Location & Seq

Genomic Coordinates Forward (+)

10062487 .. 10063972

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGCCACTTGACCCAGCGGCCTGTCTCGTCGACGACCTCCGTAACTTCTTGTCCGACGTCGGCGACCACGACGGCCGGCCCGATGATCCTAGCCGTCCGTTAATCGCAACTGAGGAAGCAGAAGAAGACCTGGAATGGATATCGAACAAGGACGCGTTCCCGGCGGTGGAAACGTTCATTCTCTCGGAGCAGGCGATTGCCAAGCACCAGAGCCCGGTCTCGGTGCTGGAGAACAGCACAAACAGCAGCAGCGCCTCCCTCATGAGCTCGTGTGGGGGGCTAAAGCCGCCCCACAGAGCGCGAACCAAAGGCCGCCGCAGGCGGAGTGAAATTCCTGCGCAGCAGCTATTTTGGAACCAACCGATTGAGAGCAAACCCAGCAGGAGTCACAGTGCCAGTGCCAGTGCCAGCAAGCTGGATATTGGGAGAAAGTGCCTGCATTGCGGGACTGATCAGACACCGCAATGGCGGGCGGGTCCCCATGGACCCAAAACCTTGTGTAATGCCTGTGGGGTGAGGTACAAGTCAGGGCGGCTTTGCCCCGAGTACCGCCCTGCGAGTAGCCCGACGTTCTCAAGCGAGGTGCATTCGAACTCCCACAGGAAGGTATTGGAGATGAGGAAGCAAAAGTATGGAATGGGGATGGTTGTGAAGCCTGAGGATAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

224

Amino Acids

24.65

Weight (kDa)

8.68

Isoelectric Point (pI)

67.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	146 - 180	1.5e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24050
fragaria_vesca	FvH4_4g05560
malus_domestica	MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis	pycom16g19570
rosa_chinensis	RchiOBHm_Chr4g0396671
rosa_laevigata	RLG00000009510
rosa_multiflora	Rmu_sc0006586.1_g000011
rosa_roxburghii	Rroxscaffold_5G00341530
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana	Rw4G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc16I	TGCGCA	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	2 cut(s)	158, 304
AclI	AACGTT	1 cut(s)	176
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	524, 551
AfiI	CCNNNNNNNGG	4 cut(s)	169, 217, 223, 607
AflIII	ACRYGT	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	270, 349, 418
AluI	AGCT	3 cut(s)	270, 349, 418
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	32, 226
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	4 cut(s)	21, 76, 80, 313
ApeKI	GCWGC	4 cut(s)	249, 252, 343, 346
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	3 cut(s)	257, 304, 343
AspS9I	GGNCC	3 cut(s)	81, 479, 488
AsuC2I	CCSGG	2 cut(s)	164, 218
AsuHPI	GGTGA	1 cut(s)	529
AsuII	TTCGAA	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	479, 488
AxyI	CCTNAGG	1 cut(s)	660
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	218, 272
BauI	CACGAG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	261, 264, 355, 358
BccI	CCATC	1 cut(s)	640
BceAI	ACGGC	2 cut(s)	81, 91
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	2 cut(s)	164, 218
BcoDI	GTCTC	2 cut(s)	32, 226
BfaI	CTAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	9 cut(s)	21, 250, 253, 290, 316, 319, 344, 347, 536
BlsI	GCNGC	9 cut(s)	22, 251, 254, 291, 317, 320, 345, 348, 537
Bme1390I	CCNGG	3 cut(s)	134, 164, 218
Bme18I	GGWCC	2 cut(s)	479, 488
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	3 cut(s)	81, 479, 488
BmiI	GGNNCC	5 cut(s)	6, 359, 480, 481, 490
BmrFI	CCNGG	3 cut(s)	134, 164, 218
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	593
BpuEI	CTTGAG	1 cut(s)	562
BpuMI	CCSGG	2 cut(s)	164, 218
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	484
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 217, 223, 607
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	399, 405
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	2 cut(s)	442, 473
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	651
BseLI	CCNNNNNNNGG	4 cut(s)	169, 217, 223, 607
BseMI	GCAATG	2 cut(s)	442, 473
BseMII	CTCAG	2 cut(s)	105, 651
BseNI	ACTGG	2 cut(s)	399, 405
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	261, 264, 355, 358
BseYI	CCCAGC	2 cut(s)	16, 380
Bsh1236I	CGCG	2 cut(s)	158, 304
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	23, 78, 82, 315
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	3 cut(s)	79, 164, 218
BslFI	GGGAC	2 cut(s)	463, 465
BslI	CCNNNNNNNGG	4 cut(s)	169, 217, 223, 607
BsmAI	GTCTC	2 cut(s)	32, 226
BsmFI	GGGAC	2 cut(s)	463, 465
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	4 cut(s)	23, 78, 82, 315
Bso31I	GGTCTC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	545
Bsp119I	TTCGAA	1 cut(s)	593
Bsp1286I	GDGCHC	2 cut(s)	218, 272
Bsp143I	GATC	2 cut(s)	88, 454
Bsp19I	CCATGG	1 cut(s)	484
BspANI	GGCC	4 cut(s)	23, 78, 82, 315
BspCNI	CTCAG	2 cut(s)	106, 652
BspFNI	CGCG	2 cut(s)	158, 304
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	5 cut(s)	6, 359, 480, 481, 490
BspPI	GGATC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	442, 473
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	399, 405
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	88, 454
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	593
BstC8I	GCNNGC	7 cut(s)	80, 195, 323, 412, 416, 440, 474
BstDEI	CTNAG	2 cut(s)	114, 660
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	1 cut(s)	651
BstFNI	CGCG	2 cut(s)	158, 304
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	3 cut(s)	257, 304, 343
BstKTI	GATC	2 cut(s)	91, 457
BstMAI	GTCTC	2 cut(s)	32, 226
BstMBI	GATC	2 cut(s)	88, 454
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 246, 289, 381, 444
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	132, 162, 216
BstUI	CGCG	2 cut(s)	158, 304
BstV1I	GCAGC	4 cut(s)	261, 264, 355, 358
BstV2I	GAAGAC	1 cut(s)	135
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstZI	CGGCCG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	4 cut(s)	23, 78, 82, 315
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	400, 406, 412
Cac8I	GCNNGC	7 cut(s)	80, 195, 323, 412, 416, 440, 474
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	3 cut(s)	257, 304, 343
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	81, 479, 488
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	523, 550
CviAII	CATG	2 cut(s)	265, 485
CviQI	GTAC	2 cut(s)	523, 550
DdeI	CTNAG	2 cut(s)	114, 660
DpnI	GATC	2 cut(s)	90, 456
DpnII	GATC	2 cut(s)	88, 454
EaeI	YGGCCR	1 cut(s)	76
EagI	CGGCCG	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	270
EclXI	CGGCCG	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	218, 272
Eco31I	GGTCTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	479, 488
Eco52I	CGGCCG	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	545
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	2 cut(s)	218, 272
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	268, 488
FaiI	YATR	3 cut(s)	266, 486, 636
FaqI	GGGAC	2 cut(s)	463, 465
FatI	CATG	2 cut(s)	264, 484
FauI	CCCGC	3 cut(s)	440, 465, 469
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	9 cut(s)	21, 250, 253, 290, 316, 319, 344, 347, 536
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	2 cut(s)	218, 272
FseI	GGCCGGCC	1 cut(s)	82
Fsp4HI	GCNGC	9 cut(s)	21, 250, 253, 290, 316, 319, 344, 347, 536
FspBI	CTAG	1 cut(s)	93
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	3 cut(s)	256, 303, 342
GluI	GCNGC	9 cut(s)	21, 250, 253, 290, 316, 319, 344, 347, 536
GsaI	CCCAGC	2 cut(s)	20, 384
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	23, 78, 82, 315
HapII	CCGG	3 cut(s)	79, 164, 218
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	3 cut(s)	257, 304, 343
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	268, 488
Hin6I	GCGC	3 cut(s)	255, 302, 341
HinP1I	GCGC	3 cut(s)	255, 302, 341
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	3 cut(s)	79, 164, 218
HphI	GGTGA	1 cut(s)	529
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	58, 190, 459
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	6 cut(s)	35, 38, 62, 65, 77, 574
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	3 cut(s)	60, 176, 572
HpyCH4V	TGCA	2 cut(s)	442, 589
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 246, 289, 381, 444
HpyF3I	CTNAG	2 cut(s)	114, 660
HpySE526I	ACGT	3 cut(s)	60, 176, 572
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	268, 488
HspAI	GCGC	3 cut(s)	255, 302, 341
KflI	GGGWCCC	1 cut(s)	479
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	88, 454
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	4 cut(s)	261, 264, 355, 358
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	3 cut(s)	60, 176, 572
MaeIII	GTNAC	2 cut(s)	44, 389
MalI	GATC	2 cut(s)	90, 456
MboI	GATC	2 cut(s)	88, 454
MboII	GAAGA	2 cut(s)	137, 140
MhlI	GDGCHC	2 cut(s)	218, 272
MluCI	AATT	1 cut(s)	333
MluI	ACGCGT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	50, 109, 268, 272, 513, 577, 615, 655
MroNI	GCCGGC	1 cut(s)	78
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	466
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	79, 164, 218
MspR9I	CCNGG	3 cut(s)	134, 164, 218
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	2 cut(s)	158, 304
MwoI	GCNNNNNNNGC	5 cut(s)	164, 246, 289, 381, 444
NaeI	GCCGGC	1 cut(s)	80
NciI	CCSGG	2 cut(s)	164, 218
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	2 cut(s)	88, 454
NgoMIV	GCCGGC	1 cut(s)	78
NlaIII	CATG	2 cut(s)	268, 488
NlaIV	GGNNCC	5 cut(s)	6, 359, 480, 481, 490
NmuCI	GTSAC	1 cut(s)	389
NsbI	TGCGCA	1 cut(s)	342
NspV	TTCGAA	1 cut(s)	593
PagI	TCATGA	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 81, 194
PctI	GAATGC	1 cut(s)	589
PdiI	GCCGGC	1 cut(s)	80
PkrI	GCNGC	9 cut(s)	22, 251, 254, 291, 317, 320, 345, 348, 537
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	132
PspFI	CCCAGC	2 cut(s)	16, 380
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	5 cut(s)	6, 359, 480, 481, 490
PspPI	GGNCC	3 cut(s)	81, 479, 488
PspPPI	RGGWCCY	1 cut(s)	479
RigI	GGCCGGCC	1 cut(s)	82
RsaI	GTAC	2 cut(s)	524, 551
RsaNI	GTAC	2 cut(s)	523, 550
RseI	CAYNNNNRTG	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	272
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	9 cut(s)	21, 250, 253, 290, 316, 319, 344, 347, 536
Sau3AI	GATC	2 cut(s)	88, 454
Sau96I	GGNCC	3 cut(s)	81, 479, 488
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	3 cut(s)	134, 164, 218
SduI	GDGCHC	2 cut(s)	218, 272
SfuI	TTCGAA	1 cut(s)	593
SgrDI	CGTCGACG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	479, 488
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	1 cut(s)	333
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	3 cut(s)	132, 162, 216
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	3 cut(s)	63, 179, 575
TaqI	TCGA	3 cut(s)	33, 146, 593
TasI	AATT	1 cut(s)	333
TauI	GCSGC	5 cut(s)	23, 292, 318, 321, 538
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	3 cut(s)	400, 406, 412
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	4 cut(s)	249, 252, 343, 346
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	2 cut(s)	32, 90
TspRI	CASTG	3 cut(s)	400, 406, 412
VpaK11BI	GGWCC	2 cut(s)	479, 488
XapI	RAATTY	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.