Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014377

Physical Location & Seq

Genomic Coordinates Reverse (-)

24175848 .. 24177484

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1234900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGTCACTGGACTCACTCGACGACATCCTCAACTTCCACTCCGACGACGCCGGCGCGGAAGATAAAGCCCATGACTTTAAACCCTCCATTGCTCCCTCTGGGGTTTTGTGCCCTGATGATCCTAGCCGTCCGTTTTCTCAAACAGAGGAGGGTGTGGAGGAGGAGCTAGAATGGCTGTCAAACAAAGACGCGTTCCCGGCGGTGGAGACATTCGTTGACATTAACCTTCTGATCGGGCAACCAGCGGGCATTGGCACGGACAAGCACCAAAGCCCTGTCTCGGTGCTTGACAACGGCACAACCCCCACCACCACCCTCATGAGCAGCTGTGGGACACTCAAGCCCCCTCAGGGTGCCCGAAGCAAGGGCCGCCGTAGGCGCGAAAGCTCCAGCTTCCCAGGCACTCTTGAGGAGCACGTCTTTTGGAGCCAATCTAACAACTGCAAAAAGGATGACAAGACAATAGTGAAAAGAACAACAGGGATGGCGATGATTGGGAGAGTATGCCAGCATTGCGGGGCTGATGAGACCCCACAATGGAGGGCAGGTCCCCTTGGACCGAAAACCCTGTGTAATGCTTGCGGGGTAAGGTACAAGTCCGGAAGGCTTGTTCCTGAGTACCGCCCTGCAAGTAGCCCAACTTTTTCAAGCAAGTTGCATTCGAATTCACACAGGAAGATAATGGAGATGAGGAAGCAAAAGCACGGGACGGGGATGTCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

243

Amino Acids

26.44

Weight (kDa)

6.71

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	170 - 204	2.4e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24050
fragaria_vesca	FvH4_4g05560
malus_domestica	MD16G1234600.v1.1 MD16G1234700.v1.1 MD16G1234800.v1.1 MD16G1234900.v1.1
pyrus_communis	pycom16g19570
rosa_chinensis	RchiOBHm_Chr4g0396671
rosa_laevigata	RLG00000009510
rosa_multiflora	Rmu_sc0006586.1_g000011
rosa_roxburghii	Rroxscaffold_5G00341530
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh4AG071200 Rh4BG069200 Rh4CG077000 Rh4DG066400
rosa_wichuraiana	Rw4G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	718
Acc36I	ACCTGC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	356
AccII	CGCG	3 cut(s)	59, 194, 384
AccIII	TCCGGA	1 cut(s)	602
AciI	CCGC	7 cut(s)	59, 203, 248, 373, 519, 585, 625
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	667
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	596, 623
AfiI	CCNNNNNNNGG	5 cut(s)	205, 283, 353, 367, 540
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	651
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	597, 629
AluBI	AGCT	5 cut(s)	169, 330, 390, 396, 725
AluI	AGCT	5 cut(s)	169, 330, 390, 396, 725
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	3 cut(s)	203, 286, 524
AlwI	GGATC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	602
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	667
AspLEI	GCGC	2 cut(s)	59, 384
AspS9I	GGNCC	3 cut(s)	370, 551, 560
AsuC2I	CCSGG	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	551, 560
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	2 cut(s)	116, 361
BanI	GGYRCC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	3 cut(s)	114, 313, 360
BciT130I	CCWGG	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	3 cut(s)	203, 286, 524
BfaI	CTAG	2 cut(s)	126, 170
BfuAI	ACCTGC	1 cut(s)	539
BisI	GCNGC	2 cut(s)	328, 373
BlsI	GCNGC	2 cut(s)	329, 374
Bme1390I	CCNGG	2 cut(s)	200, 402
Bme18I	GGWCC	2 cut(s)	551, 560
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	3 cut(s)	370, 551, 560
BmiI	GGNNCC	3 cut(s)	358, 431, 553
BmrFI	CCNGG	2 cut(s)	200, 402
BpmI	CTGGAG	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	326, 431
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	400, 556
BsaWI	WCCGGW	1 cut(s)	602
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 535, 565
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 283, 353, 367, 540
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	15
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	2 cut(s)	90, 514
BseAI	TCCGGA	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	400, 556
BseGI	GGATG	4 cut(s)	27, 460, 492, 723
BseLI	CCNNNNNNNGG	5 cut(s)	205, 283, 353, 367, 540
BseMI	GCAATG	2 cut(s)	90, 514
BseMII	CTCAG	2 cut(s)	365, 609
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	4 cut(s)	164, 176, 179, 428
BseSI	GKGCMC	2 cut(s)	116, 361
BseXI	GCAGC	1 cut(s)	339
Bsh1236I	CGCG	3 cut(s)	59, 194, 384
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	3 cut(s)	54, 200, 603
BslFI	GGGAC	3 cut(s)	349, 537, 724
BslI	CCNNNNNNNGG	5 cut(s)	205, 283, 353, 367, 540
BsmAI	GTCTC	3 cut(s)	203, 286, 524
BsmFI	GGGAC	3 cut(s)	349, 537, 724
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	372
Bso31I	GGTCTC	1 cut(s)	524
Bsp119I	TTCGAA	1 cut(s)	665
Bsp1286I	GDGCHC	3 cut(s)	116, 361, 420
Bsp13I	TCCGGA	1 cut(s)	602
Bsp143I	GATC	2 cut(s)	121, 234
BspACI	CCGC	7 cut(s)	59, 203, 248, 373, 519, 585, 625
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	364, 610
BspEI	TCCGGA	1 cut(s)	602
BspFNI	CGCG	3 cut(s)	59, 194, 384
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	358, 431, 553
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	524
BsrDI	GCAATG	2 cut(s)	90, 514
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	400, 556
BssMI	GATC	2 cut(s)	121, 234
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	4 cut(s)	55, 250, 512, 583
BstDEI	CTNAG	3 cut(s)	351, 618, 726
BstF5I	GGATG	4 cut(s)	27, 460, 492, 723
BstFNI	CGCG	3 cut(s)	59, 194, 384
BstHHI	GCGC	2 cut(s)	59, 384
BstKTI	GATC	2 cut(s)	124, 237
BstMAI	GTCTC	3 cut(s)	203, 286, 524
BstMBI	GATC	2 cut(s)	121, 234
BstMWI	GCNNNNNNNGC	6 cut(s)	175, 200, 372, 381, 402, 516
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	198, 400
BstSLI	GKGCMC	2 cut(s)	116, 361
BstUI	CGCG	3 cut(s)	59, 194, 384
BstV1I	GCAGC	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	506
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	4 cut(s)	27, 460, 492, 723
BtsIMutI	CAGTG	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	4 cut(s)	55, 250, 512, 583
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	2 cut(s)	59, 384
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	370, 551, 560
CseI	GACGC	2 cut(s)	59, 200
Csp6I	GTAC	2 cut(s)	595, 622
CviAII	CATG	2 cut(s)	74, 322
CviQI	GTAC	2 cut(s)	595, 622
DdeI	CTNAG	3 cut(s)	351, 618, 726
DpnI	GATC	2 cut(s)	123, 236
DpnII	GATC	2 cut(s)	121, 234
DraI	TTTAAA	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	718
DseDI	GACNNNNNNGTC	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	551, 560
Eco81I	CCTNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	77, 325
FaiI	YATR	3 cut(s)	75, 323, 508
FaqI	GGGAC	3 cut(s)	349, 537, 724
FatI	CATG	2 cut(s)	73, 321
FauI	CCCGC	3 cut(s)	241, 512, 578
Fnu4HI	GCNGC	2 cut(s)	328, 373
FokI	GGATG	3 cut(s)	14, 467, 499
Fsp4HI	GCNGC	2 cut(s)	328, 373
FspBI	CTAG	2 cut(s)	126, 170
GlaI	GCGC	2 cut(s)	58, 383
GluI	GCNGC	2 cut(s)	328, 373
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	3 cut(s)	54, 200, 603
HgaI	GACGC	2 cut(s)	59, 200
HhaI	GCGC	2 cut(s)	59, 384
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	77, 325
Hin6I	GCGC	2 cut(s)	57, 382
HinP1I	GCGC	2 cut(s)	57, 382
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	5, 14
HpaII	CCGG	3 cut(s)	54, 200, 603
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	46, 234
Hpy188III	TCNNGA	4 cut(s)	322, 410, 603, 617
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	3 cut(s)	26, 50, 53
HpyAV	CCTTC	2 cut(s)	239, 600
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	447, 632, 661
HpyF10VI	GCNNNNNNNGC	6 cut(s)	175, 200, 372, 381, 402, 516
HpyF3I	CTNAG	3 cut(s)	351, 618, 726
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	77, 325
HspAI	GCGC	2 cut(s)	57, 382
Kpn2I	TCCGGA	1 cut(s)	602
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	121, 234
LmnI	GCTCC	5 cut(s)	100, 166, 395, 415, 429
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	2 cut(s)	126, 170
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	2 cut(s)	123, 236
MboI	GATC	2 cut(s)	121, 234
MboII	GAAGA	2 cut(s)	74, 691
MhlI	GDGCHC	3 cut(s)	116, 361, 420
MluCI	AATT	1 cut(s)	667
MluI	ACGCGT	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	8, 14
MmeI	TCCRAC	1 cut(s)	69
MreI	CGCCGGCG	1 cut(s)	53
MroI	TCCGGA	1 cut(s)	602
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	2 cut(s)	81, 225
MslI	CAYNNNNRTG	1 cut(s)	320
MspA1I	CMGCKG	2 cut(s)	248, 330
MspI	CCGG	3 cut(s)	54, 200, 603
MspR9I	CCNGG	2 cut(s)	200, 402
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	3 cut(s)	59, 194, 384
MwoI	GCNNNNNNNGC	6 cut(s)	175, 200, 372, 381, 402, 516
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	121, 234
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	77, 325
NlaIV	GGNNCC	3 cut(s)	358, 431, 553
NmuCI	GTSAC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	665
PagI	TCATGA	1 cut(s)	321
PctI	GAATGC	1 cut(s)	661
PdiI	GCCGGC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	329, 374
PleI	GAGTC	2 cut(s)	8, 13
PpsI	GAGTC	2 cut(s)	8, 13
PpuMI	RGGWCCY	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	358, 431, 553
PspPI	GGNCC	3 cut(s)	370, 551, 560
PspPPI	RGGWCCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	330
RsaI	GTAC	2 cut(s)	596, 623
RsaNI	GTAC	2 cut(s)	595, 622
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	81, 225
SatI	GCNGC	2 cut(s)	328, 373
Sau3AI	GATC	2 cut(s)	121, 234
Sau96I	GGNCC	3 cut(s)	370, 551, 560
SchI	GAGTC	2 cut(s)	8, 14
ScrFI	CCNGG	2 cut(s)	200, 402
SduI	GDGCHC	3 cut(s)	116, 361, 420
SetI	ASST	9 cut(s)	171, 231, 332, 392, 398, 423, 553, 596, 727
SfuI	TTCGAA	1 cut(s)	665
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	551, 560
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	341, 410
SmoI	CTYRAG	2 cut(s)	341, 410
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	7 cut(s)	59, 203, 248, 373, 519, 585, 625
SspMI	CTAG	2 cut(s)	126, 170
StyD4I	CCNGG	2 cut(s)	198, 400
StyI	CCWWGG	1 cut(s)	556
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	21, 665
TaqII	GACCGA	1 cut(s)	577
TasI	AATT	1 cut(s)	667
TauI	GCSGC	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	81, 225
Tru9I	TTAA	2 cut(s)	81, 225
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	6
TspGWI	ACGGA	2 cut(s)	123, 275
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	551, 560
XapI	RAATTY	1 cut(s)	667
XspI	CTAG	2 cut(s)	126, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.