AT3G26360

Ribosomal protein S21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010416
Physical Location & Seq
Reverse (-)
9655499 .. 9656545
1047 bp
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UTR
Exon/CDS
Intron
AT3G26360.1

Sequence Viewer

Length: 306 bp
ATGAACACGATAGCGAAGCGAGTTACGGGGTTGGTGACTCGTCCGAGTCTAAACCAGCAGTTGCAGCAAGAGCGAGGGATAAGAGTGAAGGTGTTCTCCAATGATTTAGACAAGGCACTGACGATTTTGCAGAAGAAGATGCAATCGAGTGGAATGGAGAGGCTGATCAAAGGGACTCAGACTCATCACATTAAGAATTCGGAGAAGAAGGTTCTCGCTAGGAAGAATCTTGAACGCAGAATCAAATCCATTGACTTTGCTCGAAAACTCCAATCAATCCTCATCAAGAAAGTCAGAGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

101

Amino Acids

11.65

Weight (kDa)

11.51

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 29 - 81 8.7e-11 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 196
AgsI TTSAA 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 46
BbvI GCAGC 1 cut(s) 76
BclI TGATCA 1 cut(s) 165
BfaI CTAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmsI GCATC 1 cut(s) 129
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 76
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 190
BssMI GATC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 177
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 64, 70
BstV1I GCAGC 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 116
CviJI RGCY 1 cut(s) 163
CviKI_1 RGCY 1 cut(s) 163
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 196
FaiI YATR 1 cut(s) 304
FaqI GGGAC 1 cut(s) 187
FbaI TGATCA 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 65
HinfI GANTC 6 cut(s) 37, 46, 175, 181, 226, 240
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 4 cut(s) 45, 180, 202, 296
Hpy188III TCNNGA 2 cut(s) 230, 286
HpyAV CCTTC 2 cut(s) 82, 202
HpyCH4V TGCA 3 cut(s) 64, 130, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 70
HpyF3I CTNAG 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 1 cut(s) 68
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 22, 34
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 4 cut(s) 145, 148, 217, 235
MluCI AATT 1 cut(s) 196
MlyI GAGTC 4 cut(s) 31, 55, 169, 175
MnlI CCTC 4 cut(s) 68, 153, 290, 290
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 64, 70
NdeII GATC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 226, 240
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 4 cut(s) 31, 54, 169, 175
PpsI GAGTC 4 cut(s) 31, 54, 169, 175
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 165
SchI GAGTC 4 cut(s) 31, 55, 169, 175
SetI ASST 3 cut(s) 93, 213, 301
SfaNI GCATC 1 cut(s) 129
Sse9I AATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 219
TaqI TCGA 2 cut(s) 146, 262
TasI AATT 1 cut(s) 196
TfiI GAWTC 2 cut(s) 226, 240
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 123
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.