Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010416

Physical Location & Seq

Genomic Coordinates Reverse (-)

4997496 .. 4999385

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G046400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAACTCGGCGGCTCGGAGTGTGTGGAACGTTTTCAAACGGTCGAGTCAGGGCGTCGACTCAGTGAGCCACGGGCACCATCATCGTCAAGAACAATGGAGAGGGATTCGGGTGAAGGTCTTGAACGGGAACCTGGAGTCGGCGCTGACGTTTATGCAGAGGAAGATGCAGTCCAGTGGGATCGAACGGATGATAAAGCACGAGCAAACCCACCACATCAAGAACTCTGAGAAACGCGTCTTGGCTCGCAAGAACCTCGAGCGTAGAATCAAATCTCAGGACCTCGCTCGCAAGCTCAAGGTCATCCTCTCCAAGAAAGTCAGAGGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21

Protein Analysis

111

Amino Acids

12.86

Weight (kDa)

11.69

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26360 AT3G26360
fragaria_vesca	FvH4_5g21170
malus_domestica	MD02G1109400.v1.1 MD04G1159200.v1.1 MD06G1040200.v1.1 MD09G1284200.v1.1 MD12G1125700.v1.1
prunus_persica	Prupe.5G046400_v2.0.a1
pyrus_communis	pycom09g19220
rosa_chinensis	RchiOBHm_Chr7g0208311
rosa_laevigata	RLG00000003229
rosa_multiflora	Rmu_sc0000841.1_g000013 Rmu_sc0007869.1_g000028
rosa_roxburghii	Rroxscaffold_3G00250590
rosa_rugosa	Rorug07G0103100
rosa_samantha	Rh7AG237400 Rh7BG233000 Rh7CG253200 Rh7DG243400
rosa_wichuraiana	Rw7G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	237
AciI	CCGC	1 cut(s)	11
AclI	AACGTT	1 cut(s)	30
AclWI	GGATC	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	37, 124
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	200
BccI	CCATC	1 cut(s)	87
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 238, 272
BciT130I	CCWGG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	77, 131
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	195, 303
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	75, 219, 290
BseNI	ACTGG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	139
BsnI	GGCC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	3 cut(s)	74, 220, 289
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	77, 131
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	247, 289, 293
BstDEI	CTNAG	3 cut(s)	61, 228, 276
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	195, 303
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMCI	CGRYCG	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	195, 303
BtsIMutI	CAGTG	2 cut(s)	69, 181
Cac8I	GCNNGC	3 cut(s)	247, 289, 293
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	2 cut(s)	43, 226
CviJI	RGCY	5 cut(s)	14, 69, 245, 295, 327
CviKI_1	RGCY	5 cut(s)	14, 69, 245, 295, 327
DdeI	CTNAG	3 cut(s)	61, 228, 276
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	132
FaiI	YATR	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	202, 290
Fsp4HI	GCNGC	1 cut(s)	12
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	327
HgaI	GACGC	2 cut(s)	43, 226
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	5 cut(s)	46, 59, 106, 137, 267
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	3 cut(s)	18, 229, 323
Hpy188III	TCNNGA	4 cut(s)	89, 121, 220, 278
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	2 cut(s)	30, 149
HpyCH4V	TGCA	2 cut(s)	157, 169
HpyF3I	CTNAG	3 cut(s)	61, 228, 276
HpySE526I	ACGT	2 cut(s)	30, 149
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	35, 119, 146, 187, 263
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	2 cut(s)	30, 149
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	78
MluI	ACGCGT	1 cut(s)	235
MlyI	GAGTC	3 cut(s)	53, 55, 146
MnlI	CCTC	6 cut(s)	95, 153, 266, 293, 317, 317
MroXI	GAANNNNTTC	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	237
NdeII	GATC	1 cut(s)	180
NlaIV	GGNNCC	2 cut(s)	77, 131
PaeR7I	CTCGAG	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	106, 267
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	3 cut(s)	53, 54, 145
PpsI	GAGTC	3 cut(s)	53, 54, 145
PpuMI	RGGWCCY	1 cut(s)	280
Psp1406I	AACGTT	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	77, 131
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	3 cut(s)	53, 55, 146
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	33, 120, 135, 152, 258, 285, 297, 303
SfaNI	GCATC	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	257, 296
SmoI	CTYRAG	2 cut(s)	257, 296
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	2 cut(s)	33, 152
TaqI	TCGA	4 cut(s)	44, 57, 183, 258
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	106, 267
TscAI	CASTG	2 cut(s)	69, 181
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	69, 181
VpaK11BI	GGWCC	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.