Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0010416

Physical Location & Seq

Genomic Coordinates Reverse (-)

47485 .. 47913

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000841.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgaacacggcggcgaggaatgcctggagtttgttccgacggccgagtcagagcctcgccgagtcactcagtccggcggctcaccaccgccacgagcaagtgagagggattcgcgtgaaggttctgaacggaaacttggagtgggcgctgacgtttatgcagaggaagatgcagtcgagtgggatcgagaggatgatcaagcgcgagcagacccaccacatcaagaactccgagaagcgcgtgttggcacgcaagaacctcgagcgtaagctcaaatcccaagacctcgcccgcaagctccagtccatcctcatcaagaaagtcaggtatgcgatttactgttctgctttgtgccattcggatggattgggaattgggttgagtcccaatttggggattctgatttcaaatttagggtataggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21

Protein Analysis

142

Amino Acids

16.29

Weight (kDa)

10.99

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26360 AT3G26360
fragaria_vesca	FvH4_5g21170
malus_domestica	MD02G1109400.v1.1 MD04G1159200.v1.1 MD06G1040200.v1.1 MD09G1284200.v1.1 MD12G1125700.v1.1
prunus_persica	Prupe.5G046400_v2.0.a1
pyrus_communis	pycom09g19220
rosa_chinensis	RchiOBHm_Chr7g0208311
rosa_laevigata	RLG00000003229
rosa_multiflora	Rmu_sc0000841.1_g000013 Rmu_sc0007869.1_g000028
rosa_roxburghii	Rroxscaffold_3G00250590
rosa_rugosa	Rorug07G0103100
rosa_samantha	Rh7AG237400 Rh7BG233000 Rh7CG253200 Rh7DG243400
rosa_wichuraiana	Rw7G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	45
AccII	CGCG	3 cut(s)	114, 204, 240
AciI	CCGC	4 cut(s)	11, 77, 88, 292
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	392, 393
AgsI	TTSAA	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 227, 259
AluBI	AGCT	2 cut(s)	271, 298
AluI	AGCT	2 cut(s)	271, 298
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	409
AspLEI	GCGC	3 cut(s)	148, 204, 240
AsuHPI	GGTGA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	260
BauI	CACGAG	1 cut(s)	92
BccI	CCATC	2 cut(s)	314, 356
BceAI	ACGGC	2 cut(s)	24, 56
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	25
BclI	TGATCA	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	149
BisI	GCNGC	2 cut(s)	12, 78
BlsI	GCNGC	2 cut(s)	13, 79
Bme1390I	CCNGG	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	159
BpmI	CTGGAG	2 cut(s)	46, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 393
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	3 cut(s)	198, 306, 367
BseLI	CCNNNNNNNGG	2 cut(s)	392, 393
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	301
BseX3I	CGGCCG	1 cut(s)	41
Bsh1236I	CGCG	3 cut(s)	114, 204, 240
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	392, 393
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	183, 195
BspACI	CCGC	4 cut(s)	11, 77, 88, 292
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	3 cut(s)	114, 204, 240
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	183, 195
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	206, 250, 292, 296
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	198, 306, 367
BstFNI	CGCG	3 cut(s)	114, 204, 240
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	3 cut(s)	148, 204, 240
BstKTI	GATC	2 cut(s)	186, 198
BstMBI	GATC	2 cut(s)	183, 195
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	3 cut(s)	114, 204, 240
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstZI	CGGCCG	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	198, 306, 367
Cac8I	GCNNGC	4 cut(s)	206, 250, 292, 296
CfoI	GCGC	3 cut(s)	148, 204, 240
CviJI	RGCY	5 cut(s)	43, 54, 80, 271, 298
CviKI_1	RGCY	5 cut(s)	43, 54, 80, 271, 298
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	185, 197
DpnII	GATC	2 cut(s)	183, 195
DrdI	GACNNNNNNGTC	1 cut(s)	45
DseDI	GACNNNNNNGTC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	23
FaiI	YATR	3 cut(s)	158, 330, 420
FaqI	GGGAC	1 cut(s)	369
FauI	CCCGC	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	12, 78
FokI	GGATG	3 cut(s)	205, 293, 374
Fsp4HI	GCNGC	2 cut(s)	12, 78
GlaI	GCGC	3 cut(s)	147, 203, 239
GluI	GCNGC	2 cut(s)	12, 78
GsuI	CTGGAG	2 cut(s)	46, 284
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	3 cut(s)	148, 204, 240
Hin6I	GCGC	3 cut(s)	146, 202, 238
HinP1I	GCGC	3 cut(s)	146, 202, 238
HinfI	GANTC	5 cut(s)	46, 62, 109, 382, 397
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	6 cut(s)	38, 51, 126, 232, 361, 402
Hpy188III	TCNNGA	3 cut(s)	187, 223, 316
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	160, 172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	152
HspAI	GCGC	3 cut(s)	146, 202, 238
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	183, 195
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	5 cut(s)	10, 37, 87, 310, 314
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	2 cut(s)	185, 197
MboI	GATC	2 cut(s)	183, 195
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	3 cut(s)	372, 388, 409
MlyI	GAGTC	3 cut(s)	55, 71, 391
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	8 cut(s)	9, 65, 98, 156, 183, 269, 296, 320
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	3 cut(s)	114, 204, 240
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	183, 195
NmeAIII	GCCGAG	2 cut(s)	69, 85
NmuCI	GTSAC	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	260
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	109, 397
PkrI	GCNGC	2 cut(s)	13, 79
PleI	GAGTC	3 cut(s)	54, 70, 390
PpsI	GAGTC	3 cut(s)	54, 70, 390
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspXI	VCTCGAGB	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	360
SatI	GCNGC	2 cut(s)	12, 78
Sau3AI	GATC	2 cut(s)	183, 195
SchI	GAGTC	3 cut(s)	55, 71, 391
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	8 cut(s)	123, 155, 261, 273, 288, 300, 329, 425
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	372, 388, 409
SsiI	CCGC	4 cut(s)	11, 77, 88, 292
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	176, 186, 261
TasI	AATT	3 cut(s)	372, 388, 409
TauI	GCSGC	2 cut(s)	14, 80
TfiI	GAWTC	2 cut(s)	109, 397
TseFI	GTSAC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	144
XapI	RAATTY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.