AT3G26430

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014950
Physical Location & Seq
Forward (+)
9671517 .. 9675927
4411 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26430.1

Sequence Viewer

Length: 1143 bp
ATGGAAACTAATCTCTTGTTGGTAAAGTGTGTCTTATTAGCATCATGTCTCATACATCCCCGTGCTTGCTCTCCTTCTTGCAATTTCCCGGCGATATTCAACTTCGGCGACTCTAACTCCGACACAGGTGGCCTTTCTGCCTCTTTCGGACAAGCCCCTTACCCAAATGGCCAAACCTTCTTCCACTCCCCTTCCGGTCGTTTCTCAGATGGTCGACTCATCATTGACTTCATAGCGGAGGAGTTAGGTTTACCATACCTAAATGCTTTCTTAGACTCCATCGGTTCAAACTTCAGCCATGGTGCCAATTTCGCCACCGCTGGCTCCACCGTCCGGCCACCAAACGCAACCATCGCTCAGAGCGGTGTGAGTCCAATCTCTCTCGACGTTCAATTGGTCCAATTCTCCGATTTCATCACACGATCACAACTCATTCGCAATCGAGGTGGAGTGTTTAAGAAATTGCTTCCCAAGAAAGAGTATTTCTCTCAAGCATTGTACACATTCGACATCGGTCAGAACGATCTCACCGCTGGACTAAAACTTAACATGACTTCAGATCAAATCAAGGCTTATATACCAGATGTTCATGATCAGCTCTCTAACGTCATTCGTAAGGTGTATAGTAAAGGAGGAAGAAGATTTTGGATACACAACACAGCTCCACTTGGTTGTTTACCTTATGTTTTAGACCGGTTCCCAGTACCGGCTTCTCAAATCGACAATCACGGTTGTGCAATTCCGCGTAATGAGATTGCTCGATACTATAACTCTGAACTTAAAAGAAGAGTGATTGAGTTGAGAAAAGAGCTCTCTGAAGCTGCGTTTACTTATGTTGATATCTACTCTATCAAGCTTACTCTCATCACTCAAGCCAAGAAACTCGGTTTTAGGTATCCTTTGGTGGCTTGTTGTGGACATGGTGGGAAGTACAATTTCAACAAGCTTATTAAATGTGGAGCTAAAGTTATGATCAAAGGGAAAGAGATTGTGCTTGCTAAGTCTTGTAACGATGTGTCGTTTAGAGTTAGCTGGGACGGTATACATTTCACTGAAACGACAAACAGTTGGATCTTTCAGCAAATAAACGACGGGGCGTTTTCGGATCCTCCTCTTCCTGTGAAGTCTGCCTGCACCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

380

Amino Acids

42.06

Weight (kDa)

9.1

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 32 - 362 8.3e-44 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26430
fragaria_vesca FvH4_4g26020
malus_domestica MD16G1100400.v1.1
prunus_persica Prupe.1G246600_v2.0.a1 Prupe.1G246600_v2.0.a1
pyrus_communis pycom16g08510
rosa_chinensis RchiOBHm_Chr4g0433461
rosa_laevigata RLG00000006751
rosa_multiflora Rmu_sc0000312.1_g000001
rosa_roxburghii Rroxscaffold_5G00375000
rosa_rugosa Rorug04G0269000
rosa_samantha Rh4BG331600 Rh4CG346900 Rh4DG327900
rosa_wichuraiana Rw0G020090 Rw4G028040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 363
AccI GTMKAC 2 cut(s) 214, 1042
AccII CGCG 1 cut(s) 745
AciI CCGC 5 cut(s) 236, 318, 363, 531, 743
AclWI GGATC 3 cut(s) 1079, 1100, 1113
AcoI YGGCCR 2 cut(s) 169, 335
AcuI CTGAAG 3 cut(s) 277, 540, 837
AfaI GTAC 3 cut(s) 500, 705, 932
AfiI CCNNNNNNNGG 2 cut(s) 333, 706
AgeI ACCGGT 1 cut(s) 693
AgsI TTSAA 4 cut(s) 100, 288, 392, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 628, 660
AleI CACNNNNGTG 1 cut(s) 732
AluBI AGCT 8 cut(s) 598, 662, 811, 821, 856, 946, 962, 1032
AluI AGCT 8 cut(s) 598, 662, 811, 821, 856, 946, 962, 1032
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 3 cut(s) 1079, 1100, 1113
AoxI GGCC 3 cut(s) 130, 169, 335
ApeKI GCWGC 1 cut(s) 821
AsiGI ACCGGT 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 397
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 171
BamHI GGATCC 1 cut(s) 1105
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 1 cut(s) 808
BccI CCATC 3 cut(s) 203, 287, 359
BciVI GTATCC 2 cut(s) 642, 906
BclI TGATCA 2 cut(s) 592, 972
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 53
BfuI GTATCC 2 cut(s) 642, 906
BisI GCNGC 1 cut(s) 822
BlsI GCNGC 1 cut(s) 823
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 4 cut(s) 304, 325, 698, 1107
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 695
BmsI GCATC 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 695
BoxI GACNNNNGTC 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpuEI CTTGAG 2 cut(s) 474, 855
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 2 cut(s) 194, 693
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 951, 981
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 706
Bse118I RCCGGY 2 cut(s) 693, 706
Bse1I ACTGG 1 cut(s) 701
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 333, 706
BseMII CTCAG 2 cut(s) 219, 371
BseNI ACTGG 1 cut(s) 701
BseRI GAGGAG 2 cut(s) 254, 1101
BseXI GCAGC 1 cut(s) 808
BseYI CCCAGC 1 cut(s) 1032
BsgI GTGCAG 1 cut(s) 1117
Bsh1236I CGCG 1 cut(s) 745
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 132, 171, 337
BshNI GGYRCC 1 cut(s) 302
BshTI ACCGGT 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 813
BsiSI CCGG 5 cut(s) 89, 195, 334, 694, 707
BslFI GGGAC 1 cut(s) 1049
BslI CCNNNNNNNGG 2 cut(s) 333, 706
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 1049
BsnI GGCC 3 cut(s) 132, 171, 337
Bsp1286I GDGCHC 1 cut(s) 813
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 5 cut(s) 236, 318, 363, 531, 743
BspANI GGCC 3 cut(s) 132, 171, 337
BspCNI CTCAG 2 cut(s) 218, 370
BspFNI CGCG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 4 cut(s) 304, 325, 698, 1107
BspPI GGATC 3 cut(s) 1079, 1100, 1113
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 363
BsrFI RCCGGY 2 cut(s) 693, 706
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 1 cut(s) 701
BssAI RCCGGY 2 cut(s) 693, 706
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
BssNAI GTATAC 1 cut(s) 1043
BssT1I CCWWGG 1 cut(s) 298
Bst1107I GTATAC 1 cut(s) 1043
Bst4CI ACNGT 4 cut(s) 331, 731, 1040, 1067
Bst6I CTCTTC 2 cut(s) 781, 1119
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 4 cut(s) 67, 322, 996, 1132
BstDEI CTNAG 4 cut(s) 205, 271, 357, 999
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 745
BstKTI GATC 7 cut(s) 425, 526, 562, 595, 975, 1074, 1108
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 311, 353
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 1 cut(s) 808
BstX2I RGATCY 2 cut(s) 1071, 1105
BstYI RGATCY 2 cut(s) 1071, 1105
BstZ17I GTATAC 1 cut(s) 1043
BsuI GTATCC 2 cut(s) 642, 906
BsuRI GGCC 3 cut(s) 132, 171, 337
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 1050
Cac8I GCNNGC 4 cut(s) 67, 322, 996, 1132
CciI TCATGA 1 cut(s) 589
Cfr10I RCCGGY 2 cut(s) 693, 706
Cfr13I GGNCC 1 cut(s) 397
Csp6I GTAC 3 cut(s) 499, 704, 931
CspAI ACCGGT 1 cut(s) 693
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 5 cut(s) 45, 299, 550, 590, 920
CviQI GTAC 3 cut(s) 499, 704, 931
DdeI CTNAG 4 cut(s) 205, 271, 357, 999
DpnI GATC 7 cut(s) 424, 525, 561, 594, 974, 1073, 1107
DpnII GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
EaeI YGGCCR 2 cut(s) 169, 335
Eam1104I CTCTTC 2 cut(s) 781, 1119
EarI CTCTTC 2 cut(s) 781, 1119
Ecl136II GAGCTC 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 813
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 811
Eco57I CTGAAG 3 cut(s) 277, 540, 837
EcoICRI GAGCTC 1 cut(s) 811
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 5 cut(s) 48, 302, 553, 593, 923
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 1049
FatI CATG 5 cut(s) 44, 298, 549, 589, 919
FbaI TGATCA 2 cut(s) 592, 972
FblI GTMKAC 2 cut(s) 214, 1042
Fnu4HI GCNGC 1 cut(s) 822
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 813
Fsp4HI GCNGC 1 cut(s) 822
GluI GCNGC 1 cut(s) 822
GsaI CCCAGC 1 cut(s) 1036
HaeIII GGCC 3 cut(s) 132, 171, 337
HapII CCGG 5 cut(s) 89, 195, 334, 694, 707
Hin1II CATG 5 cut(s) 48, 302, 553, 593, 923
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HindIII AAGCTT 2 cut(s) 854, 944
HinfI GANTC 4 cut(s) 110, 216, 275, 370
HpaII CCGG 5 cut(s) 89, 195, 334, 694, 707
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 7 cut(s) 215, 251, 501, 677, 828, 917, 1043
Hpy188III TCNNGA 2 cut(s) 383, 590
Hpy8I GTNNAC 7 cut(s) 215, 251, 501, 677, 828, 917, 1043
Hpy99I CGWCG 2 cut(s) 389, 1094
HpyAV CCTTC 3 cut(s) 84, 187, 201
HpyCH4III ACNGT 4 cut(s) 331, 731, 1040, 1067
HpyCH4IV ACGT 2 cut(s) 387, 606
HpyCH4V TGCA 3 cut(s) 81, 737, 1134
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 353
HpyF3I CTNAG 4 cut(s) 205, 271, 357, 999
HpySE526I ACGT 2 cut(s) 387, 606
Hsp92II CATG 5 cut(s) 48, 302, 553, 593, 923
Ksp22I TGATCA 2 cut(s) 592, 972
Kzo9I GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
LmnI GCTCC 3 cut(s) 329, 667, 959
Lsp1109I GCAGC 1 cut(s) 808
LweI GCATC 1 cut(s) 50
MaeII ACGT 2 cut(s) 387, 606
MaeIII GTNAC 1 cut(s) 1007
MalI GATC 7 cut(s) 424, 525, 561, 594, 974, 1073, 1107
MbiI CCGCTC 1 cut(s) 363
MboI GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
MboII GAAGA 5 cut(s) 172, 648, 651, 798, 1106
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 2 cut(s) 1071, 1105
MhlI GDGCHC 1 cut(s) 813
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 7 cut(s) 82, 307, 392, 401, 461, 738, 934
MluNI TGGCCA 1 cut(s) 171
MlyI GAGTC 4 cut(s) 104, 210, 269, 379
MmeI TCCRAC 2 cut(s) 144, 1049
MnlI CCTC 6 cut(s) 151, 232, 437, 626, 1119, 1122
Mox20I TGGCCA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 171
MseI TTAA 4 cut(s) 456, 546, 780, 951
MslI CAYNNNNRTG 2 cut(s) 60, 732
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 2 cut(s) 320, 533
MspI CCGG 5 cut(s) 89, 195, 334, 694, 707
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 392
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 2 cut(s) 311, 353
NciI CCSGG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 298
NdeII GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
NlaIII CATG 5 cut(s) 48, 302, 553, 593, 923
NlaIV GGNNCC 4 cut(s) 304, 325, 698, 1107
OliI CACNNNNGTG 1 cut(s) 732
PagI TCATGA 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PinAI ACCGGT 1 cut(s) 693
PkrI GCNGC 1 cut(s) 823
PleI GAGTC 4 cut(s) 104, 210, 269, 378
PpsI GAGTC 4 cut(s) 104, 210, 269, 378
PshAI GACNNNNGTC 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 813
PspFI CCCAGC 1 cut(s) 1032
PspN4I GGNNCC 4 cut(s) 304, 325, 698, 1107
PspPI GGNCC 1 cut(s) 397
PsuI RGATCY 2 cut(s) 1071, 1105
RsaI GTAC 3 cut(s) 500, 705, 932
RsaNI GTAC 3 cut(s) 499, 704, 931
RseI CAYNNNNRTG 2 cut(s) 60, 732
SacI GAGCTC 1 cut(s) 813
SalI GTCGAC 1 cut(s) 213
SaqAI TTAA 4 cut(s) 456, 546, 780, 951
SatI GCNGC 1 cut(s) 822
Sau3AI GATC 7 cut(s) 422, 523, 559, 592, 972, 1071, 1105
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 4 cut(s) 104, 210, 269, 379
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 813
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 60, 732
SmlI CTYRAG 2 cut(s) 489, 870
SmoI CTYRAG 2 cut(s) 489, 870
Sse9I AATT 7 cut(s) 82, 307, 392, 401, 461, 738, 934
SsiI CCGC 5 cut(s) 236, 318, 363, 531, 743
SstI GAGCTC 1 cut(s) 813
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 4 cut(s) 331, 731, 1040, 1067
TaiI ACGT 2 cut(s) 390, 609
TaqI TCGA 6 cut(s) 214, 384, 442, 507, 720, 760
TaqII GACCGA 1 cut(s) 503
TasI AATT 7 cut(s) 82, 307, 392, 401, 461, 738, 934
TatI WGTACW 2 cut(s) 498, 930
Tru1I TTAA 4 cut(s) 456, 546, 780, 951
Tru9I TTAA 4 cut(s) 456, 546, 780, 951
TscAI CASTG 1 cut(s) 1057
TseI GCWGC 1 cut(s) 821
TspDTI ATGAA 3 cut(s) 220, 403, 578
TspRI CASTG 1 cut(s) 1057
VpaK11BI GGWCC 1 cut(s) 397
XmiI GTMKAC 2 cut(s) 214, 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.