Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014950

Physical Location & Seq

Genomic Coordinates Reverse (-)

25962954 .. 25965660

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G246600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAAACTCGCTTCCTCCTAAGACTAAGAGATCATCATGTTCTCTTTGGCCTTGTAATTTGGGCAACATTAGTGCTTCCGAGTCTTAGCATTTCTGTAAGATCATGCTCTTTCCCGGCCATGTTCAACTTTGGGGACTCAAACTCAGACACCGGGGGCCTGTCTGCAGCTTTTGGACAAGCCCCTTACCCAAATGGAGAGACTTATTTCCGCACCCCATCCGGACGCTACTCTGATGGGCGTCTTCTAATTGACTTCATAGCGGAAAGCTTGAGATTGCCTCATCTGAGTGCTTTTCTGGACTCGGTGGGTTCAAACTTCAGCCATGGAGCCAATTTTGCCACAGCTGGATCAACCATAAGGCCCCCAAACACAACCATATCACAAATTGGGGTCAGCCCCATTTCTTTAGATGTGCAGCTTGTTCAATTCTTGGACTTCCGTACAAGATCCCAAATATATCAAAAAAAAGGTGAAGTATTTGGTAAATTGCTGCCCAAGAAAGAGTATTTTTCTCAAGCCCTTTATACCTTTGACATTGGCCAAAATGATCTCACTGCTGGCTACAAACTCAACCTCACCACAGAACAAGTCAAGGCTTATGTTCCAGATGTACTGAGCCAGCTCTCTCATGCCATTAAGATTGTAGATGAACAAGGAGGAAGATCATATTGGATACATAACACAGGCCCACTGGGCTGCCTCCCTTACGTTCTGGACCGCTTCCTCGTCAACCCGGCCCAAATAGATAAATATGGGTGTGCAGATCAGTTCAATGAGGTGGCCCAATATTTCAACCAAAGACTAAAGGAAGCTTTGCTTCACCTTAAGAAAGATCTTCCACTGGCTGCAATCACCTATGTTGATGTCTACTCAGTAAAGCGCACCCTTATCACCCAAACCAAAACATATGGATTTGGGAATCCCCTTATAGCATGTTGCGGGCATGGTGGGAAATATAATTACAACAGGTACGCGAAATGTGGGACCAAGAAGACGATCAACGGCATCGAGACGGTCATCGCGAAATCATGCAATGATCCGACGGTTCAGATCAACTGGGATGGGGTCCACTACACTGAGGCCGCGAACAAGTGGATATTCCAACAAATTGTGAAAGGCTCCTTTTCGGACCCGCCAAACCCTTTGAAAATGGCCTGTCGTAGAAGTAGAAAGGACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

395

Amino Acids

44.01

Weight (kDa)

9.09

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26430
fragaria_vesca	FvH4_4g26020
malus_domestica	MD16G1100400.v1.1
prunus_persica	Prupe.1G246600_v2.0.a1 Prupe.1G246600_v2.0.a1
pyrus_communis	pycom16g08510
rosa_chinensis	RchiOBHm_Chr4g0433461
rosa_laevigata	RLG00000006751
rosa_multiflora	Rmu_sc0000312.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375000
rosa_rugosa	Rorug04G0269000
rosa_samantha	Rh4BG331600 Rh4CG346900 Rh4DG327900
rosa_wichuraiana	Rw0G020090 Rw4G028040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	870
AccII	CGCG	3 cut(s)	977, 1025, 1088
AccIII	TCCGGA	1 cut(s)	221
AciI	CCGC	6 cut(s)	211, 263, 721, 942, 1086, 1136
AclWI	GGATC	3 cut(s)	358, 444, 1034
AcoI	YGGCCR	2 cut(s)	117, 541
AcuI	CTGAAG	1 cut(s)	304
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	3 cut(s)	445, 615, 974
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	6 cut(s)	127, 315, 428, 775, 796, 1150
AjuI	GAANNNNNNNTTGG	2 cut(s)	655, 687
AluBI	AGCT	6 cut(s)	170, 270, 347, 421, 625, 815
AluI	AGCT	6 cut(s)	170, 270, 347, 421, 625, 815
Alw26I	GTCTC	2 cut(s)	194, 1007
AlwI	GGATC	3 cut(s)	358, 444, 1034
Aor13HI	TCCGGA	1 cut(s)	221
ApeKI	GCWGC	5 cut(s)	167, 418, 493, 699, 848
AspLEI	GCGC	1 cut(s)	885
AsuC2I	CCSGG	3 cut(s)	116, 154, 737
AsuHPI	GGTGA	5 cut(s)	485, 571, 815, 847, 886
AvaII	GGWCC	5 cut(s)	718, 987, 1069, 1132, 1177
BalI	TGGCCA	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	236, 1001
BbvI	GCAGC	5 cut(s)	179, 430, 480, 686, 835
BccI	CCATC	3 cut(s)	226, 230, 1058
BceAI	ACGGC	1 cut(s)	1021
BciVI	GTATCC	1 cut(s)	669
BcnI	CCSGG	3 cut(s)	116, 154, 737
BcoDI	GTCTC	2 cut(s)	194, 1007
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	827
BfuI	GTATCC	1 cut(s)	669
BglI	GCCNNNNNGGC	1 cut(s)	696
BglII	AGATCT	1 cut(s)	835
BisI	GCNGC	6 cut(s)	168, 419, 494, 700, 849, 1086
BlsI	GCNGC	6 cut(s)	169, 420, 495, 701, 850, 1087
Bme1390I	CCNGG	3 cut(s)	116, 154, 737
Bme18I	GGWCC	5 cut(s)	718, 987, 1069, 1132, 1177
BmiI	GGNNCC	7 cut(s)	158, 331, 365, 988, 1070, 1123, 1134
BmrFI	CCNGG	3 cut(s)	116, 154, 737
BmrI	ACTGGG	2 cut(s)	704, 1069
BmsI	GCATC	1 cut(s)	1017
BmuI	ACTGGG	2 cut(s)	704, 1069
BpiI	GAAGAC	2 cut(s)	236, 1001
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpuEI	CTTGAG	2 cut(s)	292, 501
BpuMI	CCSGG	3 cut(s)	116, 154, 737
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	153, 325
BsaWI	WCCGGW	1 cut(s)	221
Bse1I	ACTGG	3 cut(s)	699, 849, 1064
Bse3DI	GCAATG	1 cut(s)	1042
BseAI	TCCGGA	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	153, 325
BseGI	GGATG	2 cut(s)	218, 1069
BseMI	GCAATG	1 cut(s)	1042
BseMII	CTCAG	5 cut(s)	159, 278, 608, 888, 1071
BseNI	ACTGG	3 cut(s)	699, 849, 1064
BseXI	GCAGC	5 cut(s)	179, 430, 480, 686, 835
BsgI	GTGCAG	2 cut(s)	437, 783
Bsh1236I	CGCG	3 cut(s)	977, 1025, 1088
BsiSI	CCGG	4 cut(s)	116, 153, 222, 737
BslFI	GGGAC	2 cut(s)	149, 1000
BsmAI	GTCTC	2 cut(s)	194, 1007
BsmBI	CGTCTC	1 cut(s)	1007
BsmFI	GGGAC	2 cut(s)	149, 1000
Bsp13I	TCCGGA	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	325
Bsp68I	TCGCGA	1 cut(s)	1025
BspACI	CCGC	6 cut(s)	211, 263, 721, 942, 1086, 1136
BspCNI	CTCAG	5 cut(s)	158, 279, 609, 887, 1072
BspEI	TCCGGA	1 cut(s)	221
BspFNI	CGCG	3 cut(s)	977, 1025, 1088
BspLI	GGNNCC	7 cut(s)	158, 331, 365, 988, 1070, 1123, 1134
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	3 cut(s)	358, 444, 1034
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	1042
BsrI	ACTGG	3 cut(s)	699, 849, 1064
BssECI	CCNNGG	2 cut(s)	153, 325
BssNI	GRCGYC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	1018, 1048
BstACI	GRCGYC	1 cut(s)	241
BstAFI	CTTAAG	1 cut(s)	827
BstC8I	GCNNGC	3 cut(s)	562, 623, 944
BstDEI	CTNAG	8 cut(s)	20, 26, 86, 145, 287, 617, 874, 1080
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	2 cut(s)	218, 1069
BstFNI	CGCG	3 cut(s)	977, 1025, 1088
BstHHI	GCGC	1 cut(s)	885
BstMAI	GTCTC	2 cut(s)	194, 1007
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 696
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	3 cut(s)	114, 152, 735
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	3 cut(s)	977, 1025, 1088
BstV1I	GCAGC	5 cut(s)	179, 430, 480, 686, 835
BstV2I	GAAGAC	2 cut(s)	236, 1001
BstX2I	RGATCY	2 cut(s)	449, 835
BstYI	RGATCY	2 cut(s)	449, 835
BsuI	GTATCC	1 cut(s)	669
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	1006
BtsCI	GGATG	2 cut(s)	218, 1069
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	5 cut(s)	555, 692, 842, 1077, 1180
BtuMI	TCGCGA	1 cut(s)	1025
Cac8I	GCNNGC	3 cut(s)	562, 623, 944
CfoI	GCGC	1 cut(s)	885
CseI	GACGC	2 cut(s)	230, 234
Csp6I	GTAC	3 cut(s)	444, 614, 973
CviAII	CATG	8 cut(s)	38, 105, 121, 326, 632, 936, 947, 1032
CviQI	GTAC	3 cut(s)	444, 614, 973
DdeI	CTNAG	8 cut(s)	20, 26, 86, 145, 287, 617, 874, 1080
EaeI	YGGCCR	2 cut(s)	117, 541
Eco130I	CCWWGG	1 cut(s)	325
Eco47I	GGWCC	5 cut(s)	718, 987, 1069, 1132, 1177
Eco57I	CTGAAG	1 cut(s)	304
EcoO109I	RGGNCCY	2 cut(s)	157, 363
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	1007
FaeI	CATG	8 cut(s)	41, 108, 124, 329, 635, 939, 950, 1035
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	2 cut(s)	149, 1000
FatI	CATG	8 cut(s)	37, 104, 120, 325, 631, 935, 946, 1031
FauI	CCCGC	2 cut(s)	935, 1143
FauNDI	CATATG	1 cut(s)	910
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	6 cut(s)	168, 419, 494, 700, 849, 1086
FokI	GGATG	2 cut(s)	205, 1076
Fsp4HI	GCNGC	6 cut(s)	168, 419, 494, 700, 849, 1086
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	6 cut(s)	168, 419, 494, 700, 849, 1086
HapII	CCGG	4 cut(s)	116, 153, 222, 737
HgaI	GACGC	2 cut(s)	230, 234
HhaI	GCGC	1 cut(s)	885
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	8 cut(s)	41, 108, 124, 329, 635, 939, 950, 1035
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	2 cut(s)	268, 813
HinfI	GANTC	4 cut(s)	82, 137, 302, 922
HpaII	CCGG	4 cut(s)	116, 153, 222, 737
HphI	GGTGA	5 cut(s)	485, 571, 815, 847, 886
Hpy166II	GTNNAC	3 cut(s)	733, 871, 1072
Hpy188I	TCNGA	7 cut(s)	81, 148, 235, 288, 1044, 1053, 1132
Hpy188III	TCNNGA	6 cut(s)	222, 299, 608, 716, 1012, 1024
Hpy8I	GTNNAC	3 cut(s)	733, 871, 1072
Hpy99I	CGWCG	1 cut(s)	1048
HpyCH4III	ACNGT	2 cut(s)	1018, 1048
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	5 cut(s)	167, 418, 764, 851, 1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 696
HpyF3I	CTNAG	8 cut(s)	20, 26, 86, 145, 287, 617, 874, 1080
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	8 cut(s)	41, 108, 124, 329, 635, 939, 950, 1035
HspAI	GCGC	1 cut(s)	883
Kpn2I	TCCGGA	1 cut(s)	221
LmnI	GCTCC	2 cut(s)	329, 1127
Lsp1109I	GCAGC	5 cut(s)	179, 430, 480, 686, 835
LweI	GCATC	1 cut(s)	1017
MaeII	ACGT	1 cut(s)	711
MboII	GAAGA	4 cut(s)	236, 675, 830, 1006
MflI	RGATCY	2 cut(s)	449, 835
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	8 cut(s)	57, 249, 334, 387, 428, 488, 961, 1110
MluNI	TGGCCA	1 cut(s)	543
MlyI	GAGTC	3 cut(s)	91, 131, 296
MmeI	TCCRAC	2 cut(s)	1067, 1129
MnlI	CCTC	8 cut(s)	26, 291, 587, 653, 713, 737, 772, 1075
Mox20I	TGGCCA	1 cut(s)	543
MroI	TCCGGA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	2 cut(s)	639, 828
MslI	CAYNNNNRTG	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	4 cut(s)	116, 153, 222, 737
MspR9I	CCNGG	3 cut(s)	116, 154, 737
MvnI	CGCG	3 cut(s)	977, 1025, 1088
MwoI	GCNNNNNNNGC	2 cut(s)	338, 696
NciI	CCSGG	3 cut(s)	116, 154, 737
NcoI	CCATGG	1 cut(s)	325
NdeI	CATATG	1 cut(s)	910
NlaIII	CATG	8 cut(s)	41, 108, 124, 329, 635, 939, 950, 1035
NlaIV	GGNNCC	7 cut(s)	158, 331, 365, 988, 1070, 1123, 1134
NruI	TCGCGA	1 cut(s)	1025
NspI	RCATGY	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	1 cut(s)	1022
PfeI	GAWTC	1 cut(s)	922
PkrI	GCNGC	6 cut(s)	169, 420, 495, 701, 850, 1087
PleI	GAGTC	3 cut(s)	90, 131, 296
PpsI	GAGTC	3 cut(s)	90, 131, 296
PspN4I	GGNNCC	7 cut(s)	158, 331, 365, 988, 1070, 1123, 1134
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	449, 835
PvuII	CAGCTG	1 cut(s)	347
RruI	TCGCGA	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	445, 615, 974
RsaNI	GTAC	3 cut(s)	444, 614, 973
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	639, 828
SatI	GCNGC	6 cut(s)	168, 419, 494, 700, 849, 1086
SchI	GAGTC	3 cut(s)	91, 131, 296
ScrFI	CCNGG	3 cut(s)	116, 154, 737
SfaNI	GCATC	1 cut(s)	1017
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	5 cut(s)	718, 987, 1069, 1132, 1177
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	3 cut(s)	271, 516, 827
SmoI	CTYRAG	3 cut(s)	271, 516, 827
Sse9I	AATT	8 cut(s)	57, 249, 334, 387, 428, 488, 961, 1110
SsiI	CCGC	6 cut(s)	211, 263, 721, 942, 1086, 1136
SspI	AATATT	1 cut(s)	791
StyD4I	CCNGG	3 cut(s)	114, 152, 735
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	1018, 1048
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	1 cut(s)	1011
TasI	AATT	8 cut(s)	57, 249, 334, 387, 428, 488, 961, 1110
TatI	WGTACW	1 cut(s)	613
TauI	GCSGC	1 cut(s)	1088
TfiI	GAWTC	1 cut(s)	922
Tru1I	TTAA	2 cut(s)	639, 828
Tru9I	TTAA	2 cut(s)	639, 828
TscAI	CASTG	4 cut(s)	562, 699, 849, 1084
TseI	GCWGC	5 cut(s)	167, 418, 493, 699, 848
TspDTI	ATGAA	2 cut(s)	247, 666
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	4 cut(s)	562, 699, 849, 1084
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	5 cut(s)	718, 987, 1069, 1132, 1177
XceI	RCATGY	1 cut(s)	939
XmiI	GTMKAC	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.